data_5TVJ # _model_server_result.job_id LDjnhYHJYADpxUHuQQYTUA _model_server_result.datetime_utc '2024-11-23 21:31:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tvj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5TVJ # _exptl.entry_id 5TVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TVJ _cell.length_a 175.106 _cell.length_b 175.106 _cell.length_c 122.94 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 122.94 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 122.94 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 122.94 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 117 n y N1A C6A COA doub 118 n y C2A N3A COA doub 119 n y C2A H2A COA sing 120 n n N3A C4A COA sing 121 n y C4A C5A COA doub 122 n y C4A N9A COA sing 123 n y C5A C6A COA sing 124 n y C5A N7A COA sing 125 n y C6A N6A COA sing 126 n n N6A H61A COA sing 127 n n N6A H62A COA sing 128 n n N7A C8A COA doub 129 n y C8A N9A COA sing 130 n y C8A H8A COA sing 131 n n N9A C1B COA sing 132 n n C1B C2B COA sing 133 n n C1B O4B COA sing 134 n n C1B H1B COA sing 135 n n C2B O2B COA sing 136 n n C2B C3B COA sing 137 n n C2B H2B COA sing 138 n n O2B HO2A COA sing 139 n n C3B O3B COA sing 140 n n C3B C4B COA sing 141 n n C3B H3B COA sing 142 n n O3B P3B COA sing 143 n n P3B O7A COA doub 144 n n P3B O8A COA sing 145 n n P3B O9A COA sing 146 n n O8A HOA8 COA sing 147 n n O9A HOA9 COA sing 148 n n C4B O4B COA sing 149 n n C4B C5B COA sing 150 n n C4B H4B COA sing 151 n n C5B O5B COA sing 152 n n C5B H51A COA sing 153 n n C5B H52A COA sing 154 n n O5B P1A COA sing 155 n n P1A O1A COA doub 156 n n P1A O2A COA sing 157 n n P1A O3A COA sing 158 n n O2A HOA2 COA sing 159 n n O3A P2A COA sing 160 n n P2A O4A COA doub 161 n n P2A O5A COA sing 162 n n P2A O6A COA sing 163 n n O5A HOA5 COA sing 164 n n O6A CCP COA sing 165 n n CBP CCP COA sing 166 n n CBP CDP COA sing 167 n n CBP CEP COA sing 168 n n CBP CAP COA sing 169 n n CCP H121 COA sing 170 n n CCP H122 COA sing 171 n n CDP H131 COA sing 172 n n CDP H132 COA sing 173 n n CDP H133 COA sing 174 n n CEP H141 COA sing 175 n n CEP H142 COA sing 176 n n CEP H143 COA sing 177 n n CAP OAP COA sing 178 n n CAP C9P COA sing 179 n n CAP H10 COA sing 180 n n OAP HO1 COA sing 181 n n C9P O9P COA doub 182 n n C9P N8P COA sing 183 n n N8P C7P COA sing 184 n n N8P HN8 COA sing 185 n n C7P C6P COA sing 186 n n C7P H71 COA sing 187 n n C7P H72 COA sing 188 n n C6P C5P COA sing 189 n n C6P H61 COA sing 190 n n C6P H62 COA sing 191 n n C5P O5P COA doub 192 n n C5P N4P COA sing 193 n n N4P C3P COA sing 194 n n N4P HN4 COA sing 195 n n C3P C2P COA sing 196 n n C3P H31 COA sing 197 n n C3P H32 COA sing 198 n n C2P S1P COA sing 199 n n C2P H21 COA sing 200 n n C2P H22 COA sing 201 n n S1P HS1 COA sing 202 n n # _atom_sites.entry_id 5TVJ _atom_sites.fract_transf_matrix[1][1] 0.005711 _atom_sites.fract_transf_matrix[1][2] 0.003297 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 501 500 COA COA . C 3 7LF A 1 502 505 7LF AA6 . D 4 GOL A 1 503 507 GOL GOL . E 5 CL A 1 504 2 CL CL . F 6 HOH A 1 601 483 HOH HOH . F 6 HOH A 2 602 334 HOH HOH . F 6 HOH A 3 603 206 HOH HOH . F 6 HOH A 4 604 429 HOH HOH . F 6 HOH A 5 605 307 HOH HOH . F 6 HOH A 6 606 411 HOH HOH . F 6 HOH A 7 607 512 HOH HOH . F 6 HOH A 8 608 170 HOH HOH . F 6 HOH A 9 609 290 HOH HOH . F 6 HOH A 10 610 415 HOH HOH . F 6 HOH A 11 611 414 HOH HOH . F 6 HOH A 12 612 219 HOH HOH . F 6 HOH A 13 613 68 HOH HOH . F 6 HOH A 14 614 291 HOH HOH . F 6 HOH A 15 615 279 HOH HOH . F 6 HOH A 16 616 54 HOH HOH . F 6 HOH A 17 617 86 HOH HOH . F 6 HOH A 18 618 322 HOH HOH . F 6 HOH A 19 619 417 HOH HOH . F 6 HOH A 20 620 153 HOH HOH . F 6 HOH A 21 621 296 HOH HOH . F 6 HOH A 22 622 513 HOH HOH . F 6 HOH A 23 623 467 HOH HOH . F 6 HOH A 24 624 313 HOH HOH . F 6 HOH A 25 625 324 HOH HOH . F 6 HOH A 26 626 300 HOH HOH . F 6 HOH A 27 627 293 HOH HOH . F 6 HOH A 28 628 283 HOH HOH . F 6 HOH A 29 629 39 HOH HOH . F 6 HOH A 30 630 32 HOH HOH . F 6 HOH A 31 631 284 HOH HOH . F 6 HOH A 32 632 294 HOH HOH . F 6 HOH A 33 633 302 HOH HOH . F 6 HOH A 34 634 405 HOH HOH . F 6 HOH A 35 635 408 HOH HOH . F 6 HOH A 36 636 21 HOH HOH . F 6 HOH A 37 637 5 HOH HOH . F 6 HOH A 38 638 186 HOH HOH . F 6 HOH A 39 639 453 HOH HOH . F 6 HOH A 40 640 182 HOH HOH . F 6 HOH A 41 641 35 HOH HOH . F 6 HOH A 42 642 288 HOH HOH . F 6 HOH A 43 643 168 HOH HOH . F 6 HOH A 44 644 26 HOH HOH . F 6 HOH A 45 645 476 HOH HOH . F 6 HOH A 46 646 280 HOH HOH . F 6 HOH A 47 647 347 HOH HOH . F 6 HOH A 48 648 486 HOH HOH . F 6 HOH A 49 649 20 HOH HOH . F 6 HOH A 50 650 400 HOH HOH . F 6 HOH A 51 651 52 HOH HOH . F 6 HOH A 52 652 101 HOH HOH . F 6 HOH A 53 653 180 HOH HOH . F 6 HOH A 54 654 339 HOH HOH . F 6 HOH A 55 655 163 HOH HOH . F 6 HOH A 56 656 134 HOH HOH . F 6 HOH A 57 657 183 HOH HOH . F 6 HOH A 58 658 171 HOH HOH . F 6 HOH A 59 659 276 HOH HOH . F 6 HOH A 60 660 185 HOH HOH . F 6 HOH A 61 661 166 HOH HOH . F 6 HOH A 62 662 34 HOH HOH . F 6 HOH A 63 663 56 HOH HOH . F 6 HOH A 64 664 100 HOH HOH . F 6 HOH A 65 665 7 HOH HOH . F 6 HOH A 66 666 482 HOH HOH . F 6 HOH A 67 667 451 HOH HOH . F 6 HOH A 68 668 403 HOH HOH . F 6 HOH A 69 669 488 HOH HOH . F 6 HOH A 70 670 369 HOH HOH . F 6 HOH A 71 671 132 HOH HOH . F 6 HOH A 72 672 423 HOH HOH . F 6 HOH A 73 673 93 HOH HOH . F 6 HOH A 74 674 120 HOH HOH . F 6 HOH A 75 675 151 HOH HOH . F 6 HOH A 76 676 303 HOH HOH . F 6 HOH A 77 677 287 HOH HOH . F 6 HOH A 78 678 404 HOH HOH . F 6 HOH A 79 679 71 HOH HOH . F 6 HOH A 80 680 261 HOH HOH . F 6 HOH A 81 681 46 HOH HOH . F 6 HOH A 82 682 456 HOH HOH . F 6 HOH A 83 683 11 HOH HOH . F 6 HOH A 84 684 510 HOH HOH . F 6 HOH A 85 685 278 HOH HOH . F 6 HOH A 86 686 157 HOH HOH . F 6 HOH A 87 687 78 HOH HOH . F 6 HOH A 88 688 289 HOH HOH . F 6 HOH A 89 689 511 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 18.332 -22.82 54.134 1 130.65 ? N1A COA 501 A 1 HETATM 2 C C2A COA . . . B 2 19.172 -23.578 54.872 1 130.61 ? C2A COA 501 A 1 HETATM 3 N N3A COA . . . B 2 19.905 -24.585 54.347 1 135.5 ? N3A COA 501 A 1 HETATM 4 C C4A COA . . . B 2 19.844 -24.901 53.024 1 138.18 ? C4A COA 501 A 1 HETATM 5 C C5A COA . . . B 2 18.946 -24.11 52.166 1 135.31 ? C5A COA 501 A 1 HETATM 6 C C6A COA . . . B 2 18.169 -23.02 52.804 1 131.88 ? C6A COA 501 A 1 HETATM 7 N N6A COA . . . B 2 17.324 -22.257 52.071 1 128.84 ? N6A COA 501 A 1 HETATM 8 N N7A COA . . . B 2 19.063 -24.609 50.931 1 132.7 ? N7A COA 501 A 1 HETATM 9 C C8A COA . . . B 2 19.953 -25.628 50.974 1 135.3 ? C8A COA 501 A 1 HETATM 10 N N9A COA . . . B 2 20.422 -25.816 52.231 1 139.09 ? N9A COA 501 A 1 HETATM 11 C C1B COA . . . B 2 21.434 -26.823 52.686 1 138.31 ? C1B COA 501 A 1 HETATM 12 C C2B COA . . . B 2 20.975 -28.274 52.607 1 135.54 ? C2B COA 501 A 1 HETATM 13 O O2B COA . . . B 2 20.561 -28.734 53.897 1 130.46 ? O2B COA 501 A 1 HETATM 14 C C3B COA . . . B 2 22.185 -29.014 52.052 1 133.87 ? C3B COA 501 A 1 HETATM 15 O O3B COA . . . B 2 23.136 -29.402 53.038 1 138.28 ? O3B COA 501 A 1 HETATM 16 P P3B COA . . . B 2 22.977 -30.71 53.961 1 142.22 ? P3B COA 501 A 1 HETATM 17 O O7A COA . . . B 2 22.328 -31.745 53.067 1 137.71 ? O7A COA 501 A 1 HETATM 18 O O8A COA . . . B 2 22.109 -30.227 55.102 1 141.74 ? O8A COA 501 A 1 HETATM 19 O O9A COA . . . B 2 24.403 -31.021 54.357 1 138.44 ? O9A COA 501 A 1 HETATM 20 C C4B COA . . . B 2 22.872 -27.966 51.204 1 128.37 ? C4B COA 501 A 1 HETATM 21 O O4B COA . . . B 2 22.617 -26.73 51.872 1 135.52 ? O4B COA 501 A 1 HETATM 22 C C5B COA . . . B 2 22.277 -27.883 49.813 1 121.91 ? C5B COA 501 A 1 HETATM 23 O O5B COA . . . B 2 22.182 -29.158 49.192 1 112.48 ? O5B COA 501 A 1 HETATM 24 P P1A COA . . . B 2 21.025 -29.427 48.108 1 105.61 ? P1A COA 501 A 1 HETATM 25 O O1A COA . . . B 2 20.188 -30.595 48.584 1 103.18 ? O1A COA 501 A 1 HETATM 26 O O2A COA . . . B 2 21.728 -29.47 46.776 1 102.7 ? O2A COA 501 A 1 HETATM 27 O O3A COA . . . B 2 20.109 -28.092 48.168 1 108.83 ? O3A COA 501 A 1 HETATM 28 P P2A COA . . . B 2 18.744 -27.929 47.32 1 105.45 ? P2A COA 501 A 1 HETATM 29 O O4A COA . . . B 2 17.577 -28.299 48.206 1 106.93 ? O4A COA 501 A 1 HETATM 30 O O5A COA . . . B 2 19.002 -28.622 46.003 1 98.57 ? O5A COA 501 A 1 HETATM 31 O O6A COA . . . B 2 18.627 -26.346 47.027 1 111.04 ? O6A COA 501 A 1 HETATM 32 C CBP COA . . . B 2 17.877 -24.077 46.899 1 116.6 ? CBP COA 501 A 1 HETATM 33 C CCP COA . . . B 2 17.788 -25.384 47.695 1 112.36 ? CCP COA 501 A 1 HETATM 34 C CDP COA . . . B 2 16.697 -23.209 46.672 1 116.81 ? CDP COA 501 A 1 HETATM 35 C CEP COA . . . B 2 19.071 -24.026 45.982 1 117.91 ? CEP COA 501 A 1 HETATM 36 C CAP COA . . . B 2 18.283 -23.126 48.089 1 118.55 ? CAP COA 501 A 1 HETATM 37 O OAP COA . . . B 2 19.561 -23.417 48.682 1 123.49 ? OAP COA 501 A 1 HETATM 38 C C9P COA . . . B 2 18.149 -21.645 47.728 1 115.84 ? C9P COA 501 A 1 HETATM 39 O O9P COA . . . B 2 17.459 -20.926 48.453 1 115.17 ? O9P COA 501 A 1 HETATM 40 N N8P COA . . . B 2 18.962 -21.088 46.832 1 109.69 ? N8P COA 501 A 1 HETATM 41 C C7P COA . . . B 2 20.388 -21.197 47.165 1 105.84 ? C7P COA 501 A 1 HETATM 42 C C6P COA . . . B 2 21.111 -19.945 46.648 1 101.81 ? C6P COA 501 A 1 HETATM 43 C C5P COA . . . B 2 22.612 -20.077 46.419 1 95.84 ? C5P COA 501 A 1 HETATM 44 O O5P COA . . . B 2 23.279 -20.888 47.048 1 95.28 ? O5P COA 501 A 1 HETATM 45 N N4P COA . . . B 2 23.206 -19.264 45.522 1 90.18 ? N4P COA 501 A 1 HETATM 46 C C3P COA . . . B 2 22.565 -18.232 44.688 1 88.97 ? C3P COA 501 A 1 HETATM 47 C C2P COA . . . B 2 22.71 -16.751 45.056 1 84.66 ? C2P COA 501 A 1 HETATM 48 S S1P COA . . . B 2 22.826 -15.733 43.559 1 84.73 ? S1P COA 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #