data_5TVJ # _model_server_result.job_id Q-KZkIXF4tl8lzCFv0-pvQ _model_server_result.datetime_utc '2024-10-15 11:26:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tvj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5TVJ # _exptl.entry_id 5TVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TVJ _cell.length_a 175.106 _cell.length_b 175.106 _cell.length_c 122.94 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 122.94 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 122.94 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 122.94 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 262 n n C1 C2 GOL sing 263 n n C1 H11 GOL sing 264 n n C1 H12 GOL sing 265 n n O1 HO1 GOL sing 266 n n C2 O2 GOL sing 267 n n C2 C3 GOL sing 268 n n C2 H2 GOL sing 269 n n O2 HO2 GOL sing 270 n n C3 O3 GOL sing 271 n n C3 H31 GOL sing 272 n n C3 H32 GOL sing 273 n n O3 HO3 GOL sing 274 n n # _atom_sites.entry_id 5TVJ _atom_sites.fract_transf_matrix[1][1] 0.005711 _atom_sites.fract_transf_matrix[1][2] 0.003297 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 501 500 COA COA . C 3 7LF A 1 502 505 7LF AA6 . D 4 GOL A 1 503 507 GOL GOL . E 5 CL A 1 504 2 CL CL . F 6 HOH A 1 601 483 HOH HOH . F 6 HOH A 2 602 334 HOH HOH . F 6 HOH A 3 603 206 HOH HOH . F 6 HOH A 4 604 429 HOH HOH . F 6 HOH A 5 605 307 HOH HOH . F 6 HOH A 6 606 411 HOH HOH . F 6 HOH A 7 607 512 HOH HOH . F 6 HOH A 8 608 170 HOH HOH . F 6 HOH A 9 609 290 HOH HOH . F 6 HOH A 10 610 415 HOH HOH . F 6 HOH A 11 611 414 HOH HOH . F 6 HOH A 12 612 219 HOH HOH . F 6 HOH A 13 613 68 HOH HOH . F 6 HOH A 14 614 291 HOH HOH . F 6 HOH A 15 615 279 HOH HOH . F 6 HOH A 16 616 54 HOH HOH . F 6 HOH A 17 617 86 HOH HOH . F 6 HOH A 18 618 322 HOH HOH . F 6 HOH A 19 619 417 HOH HOH . F 6 HOH A 20 620 153 HOH HOH . F 6 HOH A 21 621 296 HOH HOH . F 6 HOH A 22 622 513 HOH HOH . F 6 HOH A 23 623 467 HOH HOH . F 6 HOH A 24 624 313 HOH HOH . F 6 HOH A 25 625 324 HOH HOH . F 6 HOH A 26 626 300 HOH HOH . F 6 HOH A 27 627 293 HOH HOH . F 6 HOH A 28 628 283 HOH HOH . F 6 HOH A 29 629 39 HOH HOH . F 6 HOH A 30 630 32 HOH HOH . F 6 HOH A 31 631 284 HOH HOH . F 6 HOH A 32 632 294 HOH HOH . F 6 HOH A 33 633 302 HOH HOH . F 6 HOH A 34 634 405 HOH HOH . F 6 HOH A 35 635 408 HOH HOH . F 6 HOH A 36 636 21 HOH HOH . F 6 HOH A 37 637 5 HOH HOH . F 6 HOH A 38 638 186 HOH HOH . F 6 HOH A 39 639 453 HOH HOH . F 6 HOH A 40 640 182 HOH HOH . F 6 HOH A 41 641 35 HOH HOH . F 6 HOH A 42 642 288 HOH HOH . F 6 HOH A 43 643 168 HOH HOH . F 6 HOH A 44 644 26 HOH HOH . F 6 HOH A 45 645 476 HOH HOH . F 6 HOH A 46 646 280 HOH HOH . F 6 HOH A 47 647 347 HOH HOH . F 6 HOH A 48 648 486 HOH HOH . F 6 HOH A 49 649 20 HOH HOH . F 6 HOH A 50 650 400 HOH HOH . F 6 HOH A 51 651 52 HOH HOH . F 6 HOH A 52 652 101 HOH HOH . F 6 HOH A 53 653 180 HOH HOH . F 6 HOH A 54 654 339 HOH HOH . F 6 HOH A 55 655 163 HOH HOH . F 6 HOH A 56 656 134 HOH HOH . F 6 HOH A 57 657 183 HOH HOH . F 6 HOH A 58 658 171 HOH HOH . F 6 HOH A 59 659 276 HOH HOH . F 6 HOH A 60 660 185 HOH HOH . F 6 HOH A 61 661 166 HOH HOH . F 6 HOH A 62 662 34 HOH HOH . F 6 HOH A 63 663 56 HOH HOH . F 6 HOH A 64 664 100 HOH HOH . F 6 HOH A 65 665 7 HOH HOH . F 6 HOH A 66 666 482 HOH HOH . F 6 HOH A 67 667 451 HOH HOH . F 6 HOH A 68 668 403 HOH HOH . F 6 HOH A 69 669 488 HOH HOH . F 6 HOH A 70 670 369 HOH HOH . F 6 HOH A 71 671 132 HOH HOH . F 6 HOH A 72 672 423 HOH HOH . F 6 HOH A 73 673 93 HOH HOH . F 6 HOH A 74 674 120 HOH HOH . F 6 HOH A 75 675 151 HOH HOH . F 6 HOH A 76 676 303 HOH HOH . F 6 HOH A 77 677 287 HOH HOH . F 6 HOH A 78 678 404 HOH HOH . F 6 HOH A 79 679 71 HOH HOH . F 6 HOH A 80 680 261 HOH HOH . F 6 HOH A 81 681 46 HOH HOH . F 6 HOH A 82 682 456 HOH HOH . F 6 HOH A 83 683 11 HOH HOH . F 6 HOH A 84 684 510 HOH HOH . F 6 HOH A 85 685 278 HOH HOH . F 6 HOH A 86 686 157 HOH HOH . F 6 HOH A 87 687 78 HOH HOH . F 6 HOH A 88 688 289 HOH HOH . F 6 HOH A 89 689 511 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 28.681 1.512 49.24 1 33.87 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . D 4 29.088 0.189 48.92 1 41.07 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . D 4 28.087 2.147 48.041 1 34.45 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . D 4 26.893 1.386 47.906 1 39.5 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . D 4 27.796 3.606 48.41 1 44.08 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . D 4 26.696 4.304 47.692 1 48 ? O3 GOL 503 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #