data_5TVL
#
_model_server_result.job_id            rvY8OkZrcZh0ON18mWRz6w 
_model_server_result.datetime_utc      '2024-10-28 02:33:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tvl 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":502}' 
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_entry.id    5TVL 
#
_exptl.entry_id    5TVL 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.49 
_cell.angle_gamma         90 
_cell.entry_id            5TVL 
_cell.length_a            72.315 
_cell.length_b            70.94 
_cell.length_c            116.626 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5TVL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 M N N 
? 4 P N N 
? 4 Q N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
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_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     5TVL 
_atom_sites.fract_transf_matrix[1][1]    0.013828 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00036 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014096 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008577 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CL A 1 501 5 CL CL . 
F 3 SO4 A 1 502 8 SO4 SO4 . 
G 4 GOL A 1 503 16 GOL GOL . 
H 2 CL B 1 501 2 CL CL . 
I 2 CL B 1 502 4 CL CL . 
J 2 CL B 1 503 7 CL CL . 
K 3 SO4 B 1 504 9 SO4 SO4 . 
L 3 SO4 B 1 505 10 SO4 SO4 . 
M 4 GOL B 1 506 12 GOL GOL . 
N 2 CL C 1 501 1 CL CL . 
O 2 CL C 1 502 6 CL CL . 
P 4 GOL C 1 503 11 GOL GOL . 
Q 4 GOL C 1 504 15 GOL GOL . 
R 2 CL D 1 501 3 CL CL . 
S 4 GOL D 1 502 13 GOL GOL . 
T 4 GOL D 1 503 14 GOL GOL . 
U 4 GOL D 1 504 17 GOL GOL . 
V 5 HOH A 1 401 31 HOH HOH . 
V 5 HOH A 2 402 61 HOH HOH . 
V 5 HOH A 3 403 85 HOH HOH . 
V 5 HOH A 4 404 77 HOH HOH . 
V 5 HOH A 5 405 43 HOH HOH . 
V 5 HOH A 6 406 17 HOH HOH . 
V 5 HOH A 7 407 67 HOH HOH . 
V 5 HOH A 8 408 24 HOH HOH . 
V 5 HOH A 9 409 10 HOH HOH . 
V 5 HOH A 10 410 72 HOH HOH . 
V 5 HOH A 11 411 22 HOH HOH . 
V 5 HOH A 12 412 32 HOH HOH . 
V 5 HOH A 13 413 49 HOH HOH . 
V 5 HOH A 14 414 84 HOH HOH . 
V 5 HOH A 15 415 60 HOH HOH . 
V 5 HOH A 16 416 56 HOH HOH . 
V 5 HOH A 17 417 37 HOH HOH . 
V 5 HOH A 18 418 39 HOH HOH . 
V 5 HOH A 19 419 59 HOH HOH . 
W 5 HOH B 1 401 63 HOH HOH . 
W 5 HOH B 2 402 75 HOH HOH . 
W 5 HOH B 3 403 40 HOH HOH . 
W 5 HOH B 4 404 23 HOH HOH . 
W 5 HOH B 5 405 1 HOH HOH . 
W 5 HOH B 6 406 41 HOH HOH . 
W 5 HOH B 7 407 46 HOH HOH . 
W 5 HOH B 8 408 83 HOH HOH . 
W 5 HOH B 9 409 27 HOH HOH . 
W 5 HOH B 10 410 4 HOH HOH . 
W 5 HOH B 11 411 91 HOH HOH . 
W 5 HOH B 12 412 51 HOH HOH . 
W 5 HOH B 13 413 14 HOH HOH . 
W 5 HOH B 14 414 54 HOH HOH . 
W 5 HOH B 15 415 52 HOH HOH . 
W 5 HOH B 16 416 2 HOH HOH . 
W 5 HOH B 17 417 3 HOH HOH . 
W 5 HOH B 18 418 70 HOH HOH . 
W 5 HOH B 19 419 50 HOH HOH . 
W 5 HOH B 20 420 79 HOH HOH . 
W 5 HOH B 21 421 74 HOH HOH . 
W 5 HOH B 22 422 42 HOH HOH . 
W 5 HOH B 23 423 73 HOH HOH . 
W 5 HOH B 24 424 88 HOH HOH . 
W 5 HOH B 25 425 18 HOH HOH . 
W 5 HOH B 26 426 53 HOH HOH . 
X 5 HOH C 1 401 30 HOH HOH . 
X 5 HOH C 2 402 35 HOH HOH . 
X 5 HOH C 3 403 8 HOH HOH . 
X 5 HOH C 4 404 12 HOH HOH . 
X 5 HOH C 5 405 33 HOH HOH . 
X 5 HOH C 6 406 48 HOH HOH . 
X 5 HOH C 7 407 5 HOH HOH . 
X 5 HOH C 8 408 89 HOH HOH . 
X 5 HOH C 9 409 44 HOH HOH . 
X 5 HOH C 10 410 20 HOH HOH . 
X 5 HOH C 11 411 36 HOH HOH . 
X 5 HOH C 12 412 69 HOH HOH . 
X 5 HOH C 13 413 62 HOH HOH . 
X 5 HOH C 14 414 11 HOH HOH . 
X 5 HOH C 15 415 80 HOH HOH . 
X 5 HOH C 16 416 76 HOH HOH . 
X 5 HOH C 17 417 55 HOH HOH . 
X 5 HOH C 18 418 6 HOH HOH . 
X 5 HOH C 19 419 29 HOH HOH . 
X 5 HOH C 20 420 47 HOH HOH . 
X 5 HOH C 21 421 26 HOH HOH . 
Y 5 HOH D 1 401 71 HOH HOH . 
Y 5 HOH D 2 402 34 HOH HOH . 
Y 5 HOH D 3 403 15 HOH HOH . 
Y 5 HOH D 4 404 19 HOH HOH . 
Y 5 HOH D 5 405 7 HOH HOH . 
Y 5 HOH D 6 406 25 HOH HOH . 
Y 5 HOH D 7 407 57 HOH HOH . 
Y 5 HOH D 8 408 38 HOH HOH . 
Y 5 HOH D 9 409 68 HOH HOH . 
Y 5 HOH D 10 410 87 HOH HOH . 
Y 5 HOH D 11 411 58 HOH HOH . 
Y 5 HOH D 12 412 64 HOH HOH . 
Y 5 HOH D 13 413 9 HOH HOH . 
Y 5 HOH D 14 414 45 HOH HOH . 
Y 5 HOH D 15 415 16 HOH HOH . 
Y 5 HOH D 16 416 86 HOH HOH . 
Y 5 HOH D 17 417 82 HOH HOH . 
Y 5 HOH D 18 418 13 HOH HOH . 
Y 5 HOH D 19 419 28 HOH HOH . 
Y 5 HOH D 20 420 81 HOH HOH . 
Y 5 HOH D 21 421 90 HOH HOH . 
Y 5 HOH D 22 422 21 HOH HOH . 
Y 5 HOH D 23 423 78 HOH HOH . 
Y 5 HOH D 24 424 66 HOH HOH . 
Y 5 HOH D 25 425 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . S 4 78.007 13.937 -26.483 1 56.29 ? C1 GOL 502 D 1 
HETATM 2 O O1 GOL . . . S 4 77.784 12.999 -25.421 1 44.25 ? O1 GOL 502 D 1 
HETATM 3 C C2 GOL . . . S 4 77.429 15.318 -26.148 1 66.28 ? C2 GOL 502 D 1 
HETATM 4 O O2 GOL . . . S 4 76.347 15.209 -25.211 1 60.77 ? O2 GOL 502 D 1 
HETATM 5 C C3 GOL . . . S 4 76.909 16.026 -27.4 1 68.52 ? C3 GOL 502 D 1 
HETATM 6 O O3 GOL . . . S 4 77.855 15.955 -28.476 1 71.58 ? O3 GOL 502 D 1 
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_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
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