data_5TVN # _model_server_result.job_id g3xPKeyyA_B_0Z5JvAGXkg _model_server_result.datetime_utc '2024-11-23 22:50:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 5TVN # _exptl.entry_id 5TVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.432 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (8alpha)-N,N-diethyl-6-methyl-9,10-didehydroergoline-8-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TVN _cell.length_a 59.195 _cell.length_b 119.177 _cell.length_c 170.99 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 88 A CYS 128 1_555 A SG CYS 167 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 352 A CYS 350 1_555 A SG CYS 355 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C20 H25 N3 O' _chem_comp.formula_weight 323.432 _chem_comp.id 7LD _chem_comp.mon_nstd_flag . _chem_comp.name (8alpha)-N,N-diethyl-6-methyl-9,10-didehydroergoline-8-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Lysergic acid diethylamide' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N2 7LD sing 1 n n C8 C7 7LD doub 2 n y C8 N1 7LD sing 3 n y C15 C7 7LD sing 4 n n C15 C11 7LD sing 5 n n C7 C3 7LD sing 6 n y N1 C1 7LD sing 7 n y N2 C11 7LD sing 8 n n N2 C13 7LD sing 9 n n C11 C9 7LD sing 10 n n C3 C1 7LD doub 11 n y C3 C6 7LD sing 12 n y C13 C14 7LD sing 13 n n C1 C4 7LD sing 14 n y C9 C6 7LD sing 15 n n C9 C10 7LD doub 16 n n C6 C2 7LD doub 17 n y C4 C5 7LD doub 18 n y C14 C10 7LD sing 19 n n C14 C16 7LD sing 20 n n C17 N3 7LD sing 21 n n C17 C18 7LD sing 22 n n C2 C5 7LD sing 23 n y C16 N3 7LD sing 24 n n C16 O1 7LD doub 25 n n N3 C19 7LD sing 26 n n C20 C19 7LD sing 27 n n N1 H1 7LD sing 28 n n C4 H2 7LD sing 29 n n C5 H3 7LD sing 30 n n C8 H4 7LD sing 31 n n C10 H5 7LD sing 32 n n C13 H6 7LD sing 33 n n C13 H7 7LD sing 34 n n C15 H8 7LD sing 35 n n C15 H9 7LD sing 36 n n C17 H10 7LD sing 37 n n C17 H11 7LD sing 38 n n C20 H12 7LD sing 39 n n C20 H13 7LD sing 40 n n C20 H14 7LD sing 41 n n C12 H16 7LD sing 42 n n C12 H17 7LD sing 43 n n C12 H18 7LD sing 44 n n C11 H19 7LD sing 45 n n C2 H20 7LD sing 46 n n C14 H21 7LD sing 47 n n C19 H22 7LD sing 48 n n C19 H23 7LD sing 49 n n C18 H24 7LD sing 50 n n C18 H25 7LD sing 51 n n C18 H26 7LD sing 52 n n # _atom_sites.entry_id 5TVN _atom_sites.fract_transf_matrix[1][1] 0.016893 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7LD A 1 2001 2001 7LD LIG . C 3 CLR A 1 2002 2002 CLR CLR . D 4 OLC A 1 2003 2003 OLC OLC . E 5 PEG A 1 2004 2004 PEG PEG . F 6 PO4 A 1 2005 2005 PO4 PO4 . G 7 HOH A 1 2101 2006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 7LD . . . B 2 -25.976 -12.817 6.961 1 46.14 ? N1 7LD 2001 A 1 HETATM 2 N N3 7LD . . . B 2 -21.864 -20.023 10.866 1 51.57 ? N3 7LD 2001 A 1 HETATM 3 C C4 7LD . . . B 2 -26.221 -12.989 9.395 1 56.04 ? C4 7LD 2001 A 1 HETATM 4 C C5 7LD . . . B 2 -25.866 -13.776 10.49 1 58.27 ? C5 7LD 2001 A 1 HETATM 5 C C6 7LD . . . B 2 -24.689 -15.22 9.007 1 59.44 ? C6 7LD 2001 A 1 HETATM 6 C C7 7LD . . . B 2 -24.779 -14.611 6.745 1 57.47 ? C7 7LD 2001 A 1 HETATM 7 C C8 7LD . . . B 2 -25.338 -13.597 6.082 1 47.24 ? C8 7LD 2001 A 1 HETATM 8 C C10 7LD . . . B 2 -23.329 -17.078 9.739 1 57.49 ? C10 7LD 2001 A 1 HETATM 9 C C13 7LD . . . B 2 -23.007 -18.837 8.162 1 61.05 ? C13 7LD 2001 A 1 HETATM 10 C C15 7LD . . . B 2 -23.988 -15.691 6.352 1 52.28 ? C15 7LD 2001 A 1 HETATM 11 C C17 7LD . . . B 2 -20.534 -20.017 10.238 1 53.29 ? C17 7LD 2001 A 1 HETATM 12 C C20 7LD . . . B 2 -22.772 -22.256 11.381 1 45.43 ? C20 7LD 2001 A 1 HETATM 13 N N2 7LD . . . B 2 -22.935 -17.809 7.116 1 54.54 ? N2 7LD 2001 A 1 HETATM 14 C C12 7LD . . . B 2 -23.226 -18.427 5.814 1 56.86 ? C12 7LD 2001 A 1 HETATM 15 C C11 7LD . . . B 2 -23.992 -16.826 7.392 1 50.73 ? C11 7LD 2001 A 1 HETATM 16 C C3 7LD . . . B 2 -25.08 -14.43 8.019 1 61.74 ? C3 7LD 2001 A 1 HETATM 17 C C1 7LD . . . B 2 -25.812 -13.339 8.177 1 55.91 ? C1 7LD 2001 A 1 HETATM 18 C C2 7LD . . . B 2 -25.086 -14.914 10.302 1 54.25 ? C2 7LD 2001 A 1 HETATM 19 C C9 7LD . . . B 2 -23.939 -16.35 8.714 1 57.43 ? C9 7LD 2001 A 1 HETATM 20 C C14 7LD . . . B 2 -22.597 -18.247 9.509 1 58.55 ? C14 7LD 2001 A 1 HETATM 21 C C16 7LD . . . B 2 -22.857 -19.171 10.533 1 58.6 ? C16 7LD 2001 A 1 HETATM 22 O O1 7LD . . . B 2 -23.959 -19.19 11.081 1 56.11 ? O1 7LD 2001 A 1 HETATM 23 C C19 7LD . . . B 2 -22.04 -21.027 11.928 1 50.59 ? C19 7LD 2001 A 1 HETATM 24 C C18 7LD . . . B 2 -19.495 -19.669 11.303 1 66.51 ? C18 7LD 2001 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #