data_5TVN # _model_server_result.job_id E9lS0cdF7hBS6IOKgCWoQA _model_server_result.datetime_utc '2024-10-28 02:31:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2003}' # _entry.id 5TVN # _exptl.entry_id 5TVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TVN _cell.length_a 59.195 _cell.length_b 119.177 _cell.length_c 170.99 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 88 A CYS 128 1_555 A SG CYS 167 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 352 A CYS 350 1_555 A SG CYS 355 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 366 n n C10 C9 OLC doub 367 n n C10 C11 OLC sing 368 n n C9 C8 OLC sing 369 n n C17 C16 OLC sing 370 z n C11 C12 OLC sing 371 n n C8 C7 OLC sing 372 n n C24 C22 OLC sing 373 n n C24 O25 OLC sing 374 n n C16 C15 OLC sing 375 n n C12 C13 OLC sing 376 n n C7 C6 OLC sing 377 n n C15 C14 OLC sing 378 n n C13 C14 OLC sing 379 n n C6 C5 OLC sing 380 n n C5 C4 OLC sing 381 n n C4 C3 OLC sing 382 n n C3 C2 OLC sing 383 n n C2 C1 OLC sing 384 n n C21 C22 OLC sing 385 n n C21 O20 OLC sing 386 n n C1 O19 OLC doub 387 n n C1 O20 OLC sing 388 n n C22 O23 OLC sing 389 n n C18 H18 OLC sing 390 n n C18 H18A OLC sing 391 n n C18 H18B OLC sing 392 n n C10 H10 OLC sing 393 n n C9 H9 OLC sing 394 n n C17 H17 OLC sing 395 n n C17 H17A OLC sing 396 n n C11 H11 OLC sing 397 n n C11 H11A OLC sing 398 n n C8 H8 OLC sing 399 n n C8 H8A OLC sing 400 n n C24 H24 OLC sing 401 n n C24 H24A OLC sing 402 n n C16 H16 OLC sing 403 n n C16 H16A OLC sing 404 n n C12 H12 OLC sing 405 n n C12 H12A OLC sing 406 n n C7 H7 OLC sing 407 n n C7 H7A OLC sing 408 n n C15 H15 OLC sing 409 n n C15 H15A OLC sing 410 n n C13 H13 OLC sing 411 n n C13 H13A OLC sing 412 n n C6 H6 OLC sing 413 n n C6 H6A OLC sing 414 n n C14 H14 OLC sing 415 n n C14 H14A OLC sing 416 n n C5 H5 OLC sing 417 n n C5 H5A OLC sing 418 n n C4 H4 OLC sing 419 n n C4 H4A OLC sing 420 n n C3 H3 OLC sing 421 n n C3 H3A OLC sing 422 n n C2 H2 OLC sing 423 n n C2 H2A OLC sing 424 n n C21 H21 OLC sing 425 n n C21 H21A OLC sing 426 n n C22 H22 OLC sing 427 n n O25 HO25 OLC sing 428 n n O23 HO23 OLC sing 429 n n # _atom_sites.entry_id 5TVN _atom_sites.fract_transf_matrix[1][1] 0.016893 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7LD A 1 2001 2001 7LD LIG . C 3 CLR A 1 2002 2002 CLR CLR . D 4 OLC A 1 2003 2003 OLC OLC . E 5 PEG A 1 2004 2004 PEG PEG . F 6 PO4 A 1 2005 2005 PO4 PO4 . G 7 HOH A 1 2101 2006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . D 4 -44.263 -17.786 -3.568 1 53.72 ? C10 OLC 2003 A 1 HETATM 2 C C9 OLC . . . D 4 -43.517 -18.411 -4.475 1 49.41 ? C9 OLC 2003 A 1 HETATM 3 C C11 OLC . . . D 4 -45.359 -16.854 -4.029 1 64.85 ? C11 OLC 2003 A 1 HETATM 4 C C8 OLC . . . D 4 -43.798 -18.184 -5.941 1 43.06 ? C8 OLC 2003 A 1 HETATM 5 C C24 OLC . . . D 4 -35.881 -13.544 -13.604 1 79.02 ? C24 OLC 2003 A 1 HETATM 6 C C12 OLC . . . D 4 -46.722 -17.472 -3.746 1 73.4 ? C12 OLC 2003 A 1 HETATM 7 C C7 OLC . . . D 4 -42.669 -17.394 -6.592 1 37.56 ? C7 OLC 2003 A 1 HETATM 8 C C6 OLC . . . D 4 -41.503 -18.289 -6.997 1 35.7 ? C6 OLC 2003 A 1 HETATM 9 C C5 OLC . . . D 4 -40.21 -17.482 -6.989 1 40.41 ? C5 OLC 2003 A 1 HETATM 10 C C4 OLC . . . D 4 -39.054 -18.204 -7.672 1 45.49 ? C4 OLC 2003 A 1 HETATM 11 C C3 OLC . . . D 4 -37.915 -17.215 -7.901 1 47.75 ? C3 OLC 2003 A 1 HETATM 12 C C2 OLC . . . D 4 -36.978 -17.66 -9.017 1 53.32 ? C2 OLC 2003 A 1 HETATM 13 C C21 OLC . . . D 4 -36.262 -14.698 -11.427 1 76.45 ? C21 OLC 2003 A 1 HETATM 14 C C1 OLC . . . D 4 -36.331 -16.444 -9.64 1 73.67 ? C1 OLC 2003 A 1 HETATM 15 C C22 OLC . . . D 4 -36.777 -14.524 -12.852 1 72.03 ? C22 OLC 2003 A 1 HETATM 16 O O19 OLC . . . D 4 -35.313 -15.972 -9.164 1 93.24 ? O19 OLC 2003 A 1 HETATM 17 O O25 OLC . . . D 4 -36.194 -13.572 -15.003 1 78.79 ? O25 OLC 2003 A 1 HETATM 18 O O23 OLC . . . D 4 -36.771 -15.792 -13.517 1 65.5 ? O23 OLC 2003 A 1 HETATM 19 O O20 OLC . . . D 4 -36.904 -15.822 -10.826 1 79.66 ? O20 OLC 2003 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #