data_5TVO # _model_server_result.job_id yJMJhFZj9B03qHKy7dPhmg _model_server_result.datetime_utc '2025-06-29 03:19:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 5TVO # _exptl.entry_id 5TVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TVO _cell.length_a 46.669 _cell.length_b 75.644 _cell.length_c 87.915 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PYR 1 A PYR 401 1_555 A N SER 2 A SER 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A OH TYR 267 A TYR 667 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.023 ? metalc ? metalc2 C NA NA . A NA 701 1_555 D O HOH . A HOH 949 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc3 C NA NA . A NA 701 1_555 D O HOH . A HOH 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc4 C NA NA . A NA 701 1_555 D O HOH . A HOH 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TVO _atom_sites.fract_transf_matrix[1][1] 0.021428 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 701 1 NA NA . D 4 HOH A 1 801 134 HOH HOH . D 4 HOH A 2 802 100 HOH HOH . D 4 HOH A 3 803 148 HOH HOH . D 4 HOH A 4 804 239 HOH HOH . D 4 HOH A 5 805 251 HOH HOH . D 4 HOH A 6 806 267 HOH HOH . D 4 HOH A 7 807 44 HOH HOH . D 4 HOH A 8 808 263 HOH HOH . D 4 HOH A 9 809 150 HOH HOH . D 4 HOH A 10 810 249 HOH HOH . D 4 HOH A 11 811 111 HOH HOH . D 4 HOH A 12 812 72 HOH HOH . D 4 HOH A 13 813 266 HOH HOH . D 4 HOH A 14 814 84 HOH HOH . D 4 HOH A 15 815 87 HOH HOH . D 4 HOH A 16 816 110 HOH HOH . D 4 HOH A 17 817 254 HOH HOH . D 4 HOH A 18 818 50 HOH HOH . D 4 HOH A 19 819 109 HOH HOH . D 4 HOH A 20 820 42 HOH HOH . D 4 HOH A 21 821 90 HOH HOH . D 4 HOH A 22 822 66 HOH HOH . D 4 HOH A 23 823 85 HOH HOH . D 4 HOH A 24 824 121 HOH HOH . D 4 HOH A 25 825 61 HOH HOH . D 4 HOH A 26 826 182 HOH HOH . D 4 HOH A 27 827 176 HOH HOH . D 4 HOH A 28 828 69 HOH HOH . D 4 HOH A 29 829 65 HOH HOH . D 4 HOH A 30 830 2 HOH HOH . D 4 HOH A 31 831 162 HOH HOH . D 4 HOH A 32 832 78 HOH HOH . D 4 HOH A 33 833 33 HOH HOH . D 4 HOH A 34 834 31 HOH HOH . D 4 HOH A 35 835 207 HOH HOH . D 4 HOH A 36 836 59 HOH HOH . D 4 HOH A 37 837 37 HOH HOH . D 4 HOH A 38 838 13 HOH HOH . D 4 HOH A 39 839 64 HOH HOH . D 4 HOH A 40 840 184 HOH HOH . D 4 HOH A 41 841 36 HOH HOH . D 4 HOH A 42 842 221 HOH HOH . D 4 HOH A 43 843 225 HOH HOH . D 4 HOH A 44 844 130 HOH HOH . D 4 HOH A 45 845 171 HOH HOH . D 4 HOH A 46 846 30 HOH HOH . D 4 HOH A 47 847 3 HOH HOH . D 4 HOH A 48 848 115 HOH HOH . D 4 HOH A 49 849 163 HOH HOH . D 4 HOH A 50 850 164 HOH HOH . D 4 HOH A 51 851 49 HOH HOH . D 4 HOH A 52 852 124 HOH HOH . D 4 HOH A 53 853 247 HOH HOH . D 4 HOH A 54 854 243 HOH HOH . D 4 HOH A 55 855 48 HOH HOH . D 4 HOH A 56 856 188 HOH HOH . D 4 HOH A 57 857 19 HOH HOH . D 4 HOH A 58 858 190 HOH HOH . D 4 HOH A 59 859 125 HOH HOH . D 4 HOH A 60 860 158 HOH HOH . D 4 HOH A 61 861 68 HOH HOH . D 4 HOH A 62 862 256 HOH HOH . D 4 HOH A 63 863 215 HOH HOH . D 4 HOH A 64 864 23 HOH HOH . D 4 HOH A 65 865 175 HOH HOH . D 4 HOH A 66 866 53 HOH HOH . D 4 HOH A 67 867 145 HOH HOH . D 4 HOH A 68 868 269 HOH HOH . D 4 HOH A 69 869 192 HOH HOH . D 4 HOH A 70 870 206 HOH HOH . D 4 HOH A 71 871 14 HOH HOH . D 4 HOH A 72 872 41 HOH HOH . D 4 HOH A 73 873 92 HOH HOH . D 4 HOH A 74 874 209 HOH HOH . D 4 HOH A 75 875 127 HOH HOH . D 4 HOH A 76 876 43 HOH HOH . D 4 HOH A 77 877 10 HOH HOH . D 4 HOH A 78 878 26 HOH HOH . D 4 HOH A 79 879 166 HOH HOH . D 4 HOH A 80 880 97 HOH HOH . D 4 HOH A 81 881 133 HOH HOH . D 4 HOH A 82 882 54 HOH HOH . D 4 HOH A 83 883 217 HOH HOH . D 4 HOH A 84 884 40 HOH HOH . D 4 HOH A 85 885 7 HOH HOH . D 4 HOH A 86 886 17 HOH HOH . D 4 HOH A 87 887 8 HOH HOH . D 4 HOH A 88 888 21 HOH HOH . D 4 HOH A 89 889 9 HOH HOH . D 4 HOH A 90 890 22 HOH HOH . D 4 HOH A 91 891 117 HOH HOH . D 4 HOH A 92 892 25 HOH HOH . D 4 HOH A 93 893 197 HOH HOH . D 4 HOH A 94 894 112 HOH HOH . D 4 HOH A 95 895 86 HOH HOH . D 4 HOH A 96 896 157 HOH HOH . D 4 HOH A 97 897 258 HOH HOH . D 4 HOH A 98 898 201 HOH HOH . D 4 HOH A 99 899 198 HOH HOH . D 4 HOH A 100 900 45 HOH HOH . D 4 HOH A 101 901 55 HOH HOH . D 4 HOH A 102 902 89 HOH HOH . D 4 HOH A 103 903 46 HOH HOH . D 4 HOH A 104 904 141 HOH HOH . D 4 HOH A 105 905 76 HOH HOH . D 4 HOH A 106 906 51 HOH HOH . D 4 HOH A 107 907 83 HOH HOH . D 4 HOH A 108 908 165 HOH HOH . D 4 HOH A 109 909 222 HOH HOH . D 4 HOH A 110 910 58 HOH HOH . D 4 HOH A 111 911 218 HOH HOH . D 4 HOH A 112 912 246 HOH HOH . D 4 HOH A 113 913 4 HOH HOH . D 4 HOH A 114 914 238 HOH HOH . D 4 HOH A 115 915 189 HOH HOH . D 4 HOH A 116 916 202 HOH HOH . D 4 HOH A 117 917 262 HOH HOH . D 4 HOH A 118 918 128 HOH HOH . D 4 HOH A 119 919 103 HOH HOH . D 4 HOH A 120 920 200 HOH HOH . D 4 HOH A 121 921 123 HOH HOH . D 4 HOH A 122 922 265 HOH HOH . D 4 HOH A 123 923 73 HOH HOH . D 4 HOH A 124 924 116 HOH HOH . D 4 HOH A 125 925 27 HOH HOH . D 4 HOH A 126 926 194 HOH HOH . D 4 HOH A 127 927 245 HOH HOH . D 4 HOH A 128 928 67 HOH HOH . D 4 HOH A 129 929 144 HOH HOH . D 4 HOH A 130 930 234 HOH HOH . D 4 HOH A 131 931 132 HOH HOH . D 4 HOH A 132 932 169 HOH HOH . D 4 HOH A 133 933 129 HOH HOH . D 4 HOH A 134 934 154 HOH HOH . D 4 HOH A 135 935 93 HOH HOH . D 4 HOH A 136 936 149 HOH HOH . D 4 HOH A 137 937 24 HOH HOH . D 4 HOH A 138 938 248 HOH HOH . D 4 HOH A 139 939 250 HOH HOH . D 4 HOH A 140 940 240 HOH HOH . D 4 HOH A 141 941 186 HOH HOH . D 4 HOH A 142 942 143 HOH HOH . D 4 HOH A 143 943 139 HOH HOH . D 4 HOH A 144 944 244 HOH HOH . D 4 HOH A 145 945 185 HOH HOH . D 4 HOH A 146 946 81 HOH HOH . D 4 HOH A 147 947 11 HOH HOH . D 4 HOH A 148 948 180 HOH HOH . D 4 HOH A 149 949 63 HOH HOH . D 4 HOH A 150 950 191 HOH HOH . D 4 HOH A 151 951 120 HOH HOH . D 4 HOH A 152 952 195 HOH HOH . D 4 HOH A 153 953 39 HOH HOH . D 4 HOH A 154 954 75 HOH HOH . D 4 HOH A 155 955 107 HOH HOH . D 4 HOH A 156 956 259 HOH HOH . D 4 HOH A 157 957 35 HOH HOH . D 4 HOH A 158 958 56 HOH HOH . D 4 HOH A 159 959 228 HOH HOH . D 4 HOH A 160 960 161 HOH HOH . D 4 HOH A 161 961 102 HOH HOH . D 4 HOH A 162 962 203 HOH HOH . D 4 HOH A 163 963 227 HOH HOH . D 4 HOH A 164 964 174 HOH HOH . D 4 HOH A 165 965 153 HOH HOH . D 4 HOH A 166 966 196 HOH HOH . D 4 HOH A 167 967 172 HOH HOH . D 4 HOH A 168 968 212 HOH HOH . D 4 HOH A 169 969 177 HOH HOH . D 4 HOH A 170 970 167 HOH HOH . D 4 HOH A 171 971 114 HOH HOH . D 4 HOH A 172 972 146 HOH HOH . D 4 HOH A 173 973 138 HOH HOH . D 4 HOH A 174 974 270 HOH HOH . D 4 HOH A 175 975 152 HOH HOH . D 4 HOH A 176 976 156 HOH HOH . D 4 HOH A 177 977 135 HOH HOH . D 4 HOH A 178 978 214 HOH HOH . D 4 HOH A 179 979 170 HOH HOH . D 4 HOH A 180 980 140 HOH HOH . D 4 HOH A 181 981 137 HOH HOH . D 4 HOH A 182 982 236 HOH HOH . D 4 HOH A 183 983 211 HOH HOH . D 4 HOH A 184 984 183 HOH HOH . D 4 HOH A 185 985 219 HOH HOH . D 4 HOH A 186 986 224 HOH HOH . D 4 HOH A 187 987 106 HOH HOH . D 4 HOH A 188 988 108 HOH HOH . D 4 HOH A 189 989 105 HOH HOH . D 4 HOH A 190 990 160 HOH HOH . D 4 HOH A 191 991 151 HOH HOH . D 4 HOH A 192 992 193 HOH HOH . D 4 HOH A 193 993 178 HOH HOH . D 4 HOH A 194 994 94 HOH HOH . D 4 HOH A 195 995 98 HOH HOH . D 4 HOH A 196 996 155 HOH HOH . D 4 HOH A 197 997 71 HOH HOH . D 4 HOH A 198 998 122 HOH HOH . D 4 HOH A 199 999 210 HOH HOH . E 4 HOH B 1 101 95 HOH HOH . E 4 HOH B 2 102 147 HOH HOH . E 4 HOH B 3 103 91 HOH HOH . E 4 HOH B 4 104 5 HOH HOH . E 4 HOH B 5 105 15 HOH HOH . E 4 HOH B 6 106 38 HOH HOH . E 4 HOH B 7 107 118 HOH HOH . E 4 HOH B 8 108 28 HOH HOH . E 4 HOH B 9 109 181 HOH HOH . E 4 HOH B 10 110 113 HOH HOH . E 4 HOH B 11 111 88 HOH HOH . E 4 HOH B 12 112 29 HOH HOH . E 4 HOH B 13 113 12 HOH HOH . E 4 HOH B 14 114 237 HOH HOH . E 4 HOH B 15 115 16 HOH HOH . E 4 HOH B 16 116 1 HOH HOH . E 4 HOH B 17 117 57 HOH HOH . E 4 HOH B 18 118 32 HOH HOH . E 4 HOH B 19 119 79 HOH HOH . E 4 HOH B 20 120 82 HOH HOH . E 4 HOH B 21 121 142 HOH HOH . E 4 HOH B 22 122 173 HOH HOH . E 4 HOH B 23 123 80 HOH HOH . E 4 HOH B 24 124 52 HOH HOH . E 4 HOH B 25 125 208 HOH HOH . E 4 HOH B 26 126 101 HOH HOH . E 4 HOH B 27 127 6 HOH HOH . E 4 HOH B 28 128 226 HOH HOH . E 4 HOH B 29 129 18 HOH HOH . E 4 HOH B 30 130 77 HOH HOH . E 4 HOH B 31 131 242 HOH HOH . E 4 HOH B 32 132 199 HOH HOH . E 4 HOH B 33 133 34 HOH HOH . E 4 HOH B 34 134 96 HOH HOH . E 4 HOH B 35 135 205 HOH HOH . E 4 HOH B 36 136 47 HOH HOH . E 4 HOH B 37 137 74 HOH HOH . E 4 HOH B 38 138 119 HOH HOH . E 4 HOH B 39 139 99 HOH HOH . E 4 HOH B 40 140 220 HOH HOH . E 4 HOH B 41 141 136 HOH HOH . E 4 HOH B 42 142 241 HOH HOH . E 4 HOH B 43 143 60 HOH HOH . E 4 HOH B 44 144 187 HOH HOH . E 4 HOH B 45 145 104 HOH HOH . E 4 HOH B 46 146 235 HOH HOH . E 4 HOH B 47 147 179 HOH HOH . E 4 HOH B 48 148 253 HOH HOH . E 4 HOH B 49 149 126 HOH HOH . E 4 HOH B 50 150 159 HOH HOH . E 4 HOH B 51 151 62 HOH HOH . E 4 HOH B 52 152 20 HOH HOH . E 4 HOH B 53 153 223 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 76.883 _atom_site.Cartn_y 16.843 _atom_site.Cartn_z 2.324 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 701 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #