data_5TW3 # _model_server_result.job_id wrKC_iPodsAk9pR-2GdPgQ _model_server_result.datetime_utc '2025-01-12 02:05:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tw3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5TW3 # _exptl.entry_id 5TW3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 435.38 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-7-fluoronaphthalene-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.04 _cell.angle_gamma 90 _cell.entry_id 5TW3 _cell.length_a 224.445 _cell.length_b 69.469 _cell.length_c 104.547 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TW3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 445 A ASP 443 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc2 A OD1 ASP 500 A ASP 498 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? # _chem_comp.formula 'C23 H15 F2 N3 O4' _chem_comp.formula_weight 435.38 _chem_comp.id 7N1 _chem_comp.mon_nstd_flag . _chem_comp.name 5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-7-fluoronaphthalene-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F02 C01 7N1 sing 1 n n C01 C00 7N1 doub 2 n y C01 C02 7N1 sing 3 n y C00 C05 7N1 sing 4 n y C02 C03 7N1 doub 5 n y C05 O0B 7N1 sing 6 n n C05 C04 7N1 doub 7 n y C03 C04 7N1 sing 8 n y C0D O0B 7N1 sing 9 n n C0D C0E 7N1 sing 10 n n O0Q C0K 7N1 doub 11 n n C04 O0A 7N1 sing 12 n n C0E N0H 7N1 sing 13 n n C0K N0H 7N1 sing 14 n n C0K N0M 7N1 sing 15 n n N0H C0P 7N1 sing 16 n n N0M C0N 7N1 sing 17 n n O0A CAH 7N1 sing 18 n n CAM CAH 7N1 doub 19 n y CAM CAL 7N1 sing 20 n y CAH CAI 7N1 sing 21 n y C0P C0O 7N1 doub 22 n n C0N O0S 7N1 doub 23 n n C0N C0O 7N1 sing 24 n n F01 CAL 7N1 sing 25 n n CAL CAK 7N1 doub 26 n y CAI CAY 7N1 doub 27 n y CAI CAJ 7N1 sing 28 n y CAY CAZ 7N1 sing 29 n y CAK CAJ 7N1 sing 30 n y CAJ CBB 7N1 doub 31 n y CAZ CBA 7N1 doub 32 n y CBB CBA 7N1 sing 33 n y CBA CBC 7N1 sing 34 n n CBC NBD 7N1 trip 35 n n CAK H1 7N1 sing 36 n n CAM H2 7N1 sing 37 n n CAY H3 7N1 sing 38 n n CAZ H4 7N1 sing 39 n n CBB H5 7N1 sing 40 n n C0P H6 7N1 sing 41 n n C00 H7 7N1 sing 42 n n C0D H8 7N1 sing 43 n n C0D H9 7N1 sing 44 n n C0E H10 7N1 sing 45 n n C0E H11 7N1 sing 46 n n C0O H12 7N1 sing 47 n n N0M H13 7N1 sing 48 n n C02 H14 7N1 sing 49 n n C03 H15 7N1 sing 50 n n # _atom_sites.entry_id 5TW3 _atom_sites.fract_transf_matrix[1][1] 0.004455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001281 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 7N1 A 1 601 1 7N1 636 . D 4 MG A 1 602 1 MG MG . E 5 HOH A 1 701 24 HOH HOH . E 5 HOH A 2 702 5 HOH HOH . E 5 HOH A 3 703 21 HOH HOH . E 5 HOH A 4 704 14 HOH HOH . E 5 HOH A 5 705 13 HOH HOH . E 5 HOH A 6 706 23 HOH HOH . E 5 HOH A 7 707 6 HOH HOH . E 5 HOH A 8 708 1 HOH HOH . E 5 HOH A 9 709 4 HOH HOH . F 5 HOH B 1 501 20 HOH HOH . F 5 HOH B 2 502 7 HOH HOH . F 5 HOH B 3 503 19 HOH HOH . F 5 HOH B 4 504 8 HOH HOH . F 5 HOH B 5 505 9 HOH HOH . F 5 HOH B 6 506 10 HOH HOH . F 5 HOH B 7 507 3 HOH HOH . F 5 HOH B 8 508 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAH 7N1 . . . C 3 466.981 -15.828 124.552 1 55.15 ? CAH 7N1 601 A 1 HETATM 2 C CAI 7N1 . . . C 3 467.611 -15.947 125.819 1 54.74 ? CAI 7N1 601 A 1 HETATM 3 C CAJ 7N1 . . . C 3 467.531 -14.898 126.725 1 57.24 ? CAJ 7N1 601 A 1 HETATM 4 C CAK 7N1 . . . C 3 466.824 -13.716 126.376 1 56.65 ? CAK 7N1 601 A 1 HETATM 5 C CAL 7N1 . . . C 3 466.208 -13.611 125.123 1 52.3 ? CAL 7N1 601 A 1 HETATM 6 C CAM 7N1 . . . C 3 466.283 -14.662 124.21 1 53.09 ? CAM 7N1 601 A 1 HETATM 7 C CAY 7N1 . . . C 3 468.33 -17.159 126.165 1 53.7 ? CAY 7N1 601 A 1 HETATM 8 C CAZ 7N1 . . . C 3 468.928 -17.264 127.385 1 56.68 ? CAZ 7N1 601 A 1 HETATM 9 C CBA 7N1 . . . C 3 468.858 -16.184 128.331 1 54.5 ? CBA 7N1 601 A 1 HETATM 10 C CBB 7N1 . . . C 3 468.172 -15.017 128.011 1 55.46 ? CBB 7N1 601 A 1 HETATM 11 C CBC 7N1 . . . C 3 469.538 -16.331 129.679 1 56.19 ? CBC 7N1 601 A 1 HETATM 12 N NBD 7N1 . . . C 3 470.068 -16.478 130.699 1 58.9 ? NBD 7N1 601 A 1 HETATM 13 C C0P 7N1 . . . C 3 464.652 -19.758 124.623 1 52.66 ? C0P 7N1 601 A 1 HETATM 14 C C00 7N1 . . . C 3 465.91 -16.806 120.119 1 41.07 ? C00 7N1 601 A 1 HETATM 15 C C0D 7N1 . . . C 3 463.808 -18.326 121.655 1 52.62 ? C0D 7N1 601 A 1 HETATM 16 C C0E 7N1 . . . C 3 463.153 -19.169 122.78 1 59.11 ? C0E 7N1 601 A 1 HETATM 17 C C0K 7N1 . . . C 3 464.371 -21.393 122.838 1 54.81 ? C0K 7N1 601 A 1 HETATM 18 C C0N 7N1 . . . C 3 465.844 -21.886 124.723 1 64.17 ? C0N 7N1 601 A 1 HETATM 19 C C0O 7N1 . . . C 3 465.512 -20.573 125.288 1 56.51 ? C0O 7N1 601 A 1 HETATM 20 N N0H 7N1 . . . C 3 464.072 -20.164 123.389 1 55.66 ? N0H 7N1 601 A 1 HETATM 21 N N0M 7N1 . . . C 3 465.235 -22.171 123.542 1 61.57 ? N0M 7N1 601 A 1 HETATM 22 O O0A 7N1 . . . C 3 467.072 -16.93 123.621 1 44.04 ? O0A 7N1 601 A 1 HETATM 23 O O0B 7N1 . . . C 3 464.919 -17.657 122.248 1 49.55 ? O0B 7N1 601 A 1 HETATM 24 O O0Q 7N1 . . . C 3 463.904 -21.799 121.777 1 54.04 ? O0Q 7N1 601 A 1 HETATM 25 O O0S 7N1 . . . C 3 466.612 -22.683 125.257 1 64.48 ? O0S 7N1 601 A 1 HETATM 26 C C01 7N1 . . . C 3 467.016 -16.185 119.502 1 46.99 ? C01 7N1 601 A 1 HETATM 27 C C02 7N1 . . . C 3 468.146 -15.809 120.262 1 51.24 ? C02 7N1 601 A 1 HETATM 28 C C03 7N1 . . . C 3 468.174 -16.056 121.651 1 49.96 ? C03 7N1 601 A 1 HETATM 29 C C04 7N1 . . . C 3 467.062 -16.682 122.274 1 46.27 ? C04 7N1 601 A 1 HETATM 30 C C05 7N1 . . . C 3 465.926 -17.059 121.52 1 44.4 ? C05 7N1 601 A 1 HETATM 31 F F01 7N1 . . . C 3 465.535 -12.494 124.785 1 52.73 ? F01 7N1 601 A 1 HETATM 32 F F02 7N1 . . . C 3 467.006 -16.015 118.175 1 57.87 ? F02 7N1 601 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #