data_5TWJ # _model_server_result.job_id aHf3w1YCJSx84-iCvi_w3Q _model_server_result.datetime_utc '2024-11-04 22:45:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5twj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 5TWJ # _exptl.entry_id 5TWJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.99 _cell.angle_gamma 90 _cell.entry_id 5TWJ _cell.length_a 66.53 _cell.length_b 37.36 _cell.length_c 122.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TWJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 5TWJ _atom_sites.fract_transf_matrix[1][1] 0.015031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004025 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SAM C 1 201 4 SAM SAM . F 2 SAM D 1 201 2 SAM SAM . G 2 SAM A 1 201 3 SAM SAM . H 2 SAM B 1 201 1 SAM SAM . I 3 HOH C 1 301 61 HOH HOH . I 3 HOH C 2 302 83 HOH HOH . I 3 HOH C 3 303 29 HOH HOH . I 3 HOH C 4 304 27 HOH HOH . I 3 HOH C 5 305 80 HOH HOH . I 3 HOH C 6 306 16 HOH HOH . I 3 HOH C 7 307 68 HOH HOH . I 3 HOH C 8 308 65 HOH HOH . I 3 HOH C 9 309 89 HOH HOH . I 3 HOH C 10 310 2 HOH HOH . I 3 HOH C 11 311 13 HOH HOH . I 3 HOH C 12 312 31 HOH HOH . I 3 HOH C 13 313 11 HOH HOH . I 3 HOH C 14 314 33 HOH HOH . I 3 HOH C 15 315 57 HOH HOH . I 3 HOH C 16 316 66 HOH HOH . I 3 HOH C 17 317 12 HOH HOH . I 3 HOH C 18 318 18 HOH HOH . I 3 HOH C 19 319 9 HOH HOH . I 3 HOH C 20 320 24 HOH HOH . I 3 HOH C 21 321 69 HOH HOH . I 3 HOH C 22 322 50 HOH HOH . I 3 HOH C 23 323 78 HOH HOH . I 3 HOH C 24 324 62 HOH HOH . I 3 HOH C 25 325 15 HOH HOH . I 3 HOH C 26 326 22 HOH HOH . I 3 HOH C 27 327 21 HOH HOH . I 3 HOH C 28 328 35 HOH HOH . I 3 HOH C 29 329 45 HOH HOH . I 3 HOH C 30 330 81 HOH HOH . I 3 HOH C 31 331 87 HOH HOH . I 3 HOH C 32 332 32 HOH HOH . I 3 HOH C 33 333 70 HOH HOH . J 3 HOH D 1 301 40 HOH HOH . J 3 HOH D 2 302 19 HOH HOH . J 3 HOH D 3 303 17 HOH HOH . J 3 HOH D 4 304 20 HOH HOH . J 3 HOH D 5 305 36 HOH HOH . J 3 HOH D 6 306 84 HOH HOH . J 3 HOH D 7 307 39 HOH HOH . J 3 HOH D 8 308 1 HOH HOH . J 3 HOH D 9 309 44 HOH HOH . J 3 HOH D 10 310 8 HOH HOH . J 3 HOH D 11 311 90 HOH HOH . J 3 HOH D 12 312 55 HOH HOH . J 3 HOH D 13 313 10 HOH HOH . J 3 HOH D 14 314 6 HOH HOH . J 3 HOH D 15 315 42 HOH HOH . J 3 HOH D 16 316 26 HOH HOH . J 3 HOH D 17 317 64 HOH HOH . J 3 HOH D 18 318 77 HOH HOH . J 3 HOH D 19 319 67 HOH HOH . J 3 HOH D 20 320 7 HOH HOH . J 3 HOH D 21 321 52 HOH HOH . J 3 HOH D 22 322 88 HOH HOH . J 3 HOH D 23 323 79 HOH HOH . J 3 HOH D 24 324 58 HOH HOH . J 3 HOH D 25 325 53 HOH HOH . J 3 HOH D 26 326 41 HOH HOH . J 3 HOH D 27 327 71 HOH HOH . J 3 HOH D 28 328 72 HOH HOH . J 3 HOH D 29 329 74 HOH HOH . K 3 HOH A 1 301 91 HOH HOH . K 3 HOH A 2 302 38 HOH HOH . K 3 HOH A 3 303 28 HOH HOH . K 3 HOH A 4 304 94 HOH HOH . K 3 HOH A 5 305 5 HOH HOH . K 3 HOH A 6 306 49 HOH HOH . K 3 HOH A 7 307 3 HOH HOH . K 3 HOH A 8 308 51 HOH HOH . K 3 HOH A 9 309 25 HOH HOH . K 3 HOH A 10 310 59 HOH HOH . K 3 HOH A 11 311 23 HOH HOH . K 3 HOH A 12 312 85 HOH HOH . K 3 HOH A 13 313 73 HOH HOH . K 3 HOH A 14 314 63 HOH HOH . K 3 HOH A 15 315 54 HOH HOH . L 3 HOH B 1 301 76 HOH HOH . L 3 HOH B 2 302 56 HOH HOH . L 3 HOH B 3 303 82 HOH HOH . L 3 HOH B 4 304 30 HOH HOH . L 3 HOH B 5 305 60 HOH HOH . L 3 HOH B 6 306 48 HOH HOH . L 3 HOH B 7 307 14 HOH HOH . L 3 HOH B 8 308 43 HOH HOH . L 3 HOH B 9 309 92 HOH HOH . L 3 HOH B 10 310 47 HOH HOH . L 3 HOH B 11 311 37 HOH HOH . L 3 HOH B 12 312 34 HOH HOH . L 3 HOH B 13 313 4 HOH HOH . L 3 HOH B 14 314 46 HOH HOH . L 3 HOH B 15 315 75 HOH HOH . L 3 HOH B 16 316 86 HOH HOH . L 3 HOH B 17 317 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . F 2 -16.266 0.059 44.472 1 106.9 ? N SAM 201 D 1 HETATM 2 C CA SAM . . . F 2 -16.942 0.637 45.633 1 105.9 ? CA SAM 201 D 1 HETATM 3 C C SAM . . . F 2 -18.459 0.506 45.511 1 103.98 ? C SAM 201 D 1 HETATM 4 O O SAM . . . F 2 -18.963 -0.136 44.589 1 102.8 ? O SAM 201 D 1 HETATM 5 O OXT SAM . . . F 2 -19.215 1.03 46.333 1 103.37 ? OXT SAM 201 D 1 HETATM 6 C CB SAM . . . F 2 -16.534 2.095 45.855 1 106 ? CB SAM 201 D 1 HETATM 7 C CG SAM . . . F 2 -17.315 3.168 45.093 1 105.02 ? CG SAM 201 D 1 HETATM 8 S SD SAM . . . F 2 -16.242 4.564 44.669 1 75.62 ? SD SAM 201 D 1 HETATM 9 C CE SAM . . . F 2 -17.068 5.97 45.458 1 135.94 ? CE SAM 201 D 1 HETATM 10 C C5' SAM . . . F 2 -16.595 4.935 42.935 1 37.51 ? C5' SAM 201 D 1 HETATM 11 C C4' SAM . . . F 2 -15.862 4.08 41.896 1 38.87 ? C4' SAM 201 D 1 HETATM 12 O O4' SAM . . . F 2 -14.45 4.234 41.961 1 36.94 ? O4' SAM 201 D 1 HETATM 13 C C3' SAM . . . F 2 -16.102 2.578 41.93 1 39.24 ? C3' SAM 201 D 1 HETATM 14 O O3' SAM . . . F 2 -17.27 2.229 41.242 1 42.48 ? O3' SAM 201 D 1 HETATM 15 C C2' SAM . . . F 2 -14.902 2.024 41.206 1 37.87 ? C2' SAM 201 D 1 HETATM 16 O O2' SAM . . . F 2 -15.09 2.029 39.803 1 35.71 ? O2' SAM 201 D 1 HETATM 17 C C1' SAM . . . F 2 -13.841 3.058 41.49 1 35.88 ? C1' SAM 201 D 1 HETATM 18 N N9 SAM . . . F 2 -12.976 2.592 42.566 1 34.6 ? N9 SAM 201 D 1 HETATM 19 C C8 SAM . . . F 2 -13.016 2.944 43.899 1 29.99 ? C8 SAM 201 D 1 HETATM 20 N N7 SAM . . . F 2 -11.998 2.299 44.5 1 30.93 ? N7 SAM 201 D 1 HETATM 21 C C5 SAM . . . F 2 -11.336 1.544 43.585 1 29.31 ? C5 SAM 201 D 1 HETATM 22 C C6 SAM . . . F 2 -10.238 0.68 43.657 1 28.6 ? C6 SAM 201 D 1 HETATM 23 N N6 SAM . . . F 2 -9.605 0.44 44.812 1 28.01 ? N6 SAM 201 D 1 HETATM 24 N N1 SAM . . . F 2 -9.809 0.06 42.499 1 28.41 ? N1 SAM 201 D 1 HETATM 25 C C2 SAM . . . F 2 -10.437 0.282 41.297 1 30.23 ? C2 SAM 201 D 1 HETATM 26 N N3 SAM . . . F 2 -11.525 1.125 41.228 1 32.06 ? N3 SAM 201 D 1 HETATM 27 C C4 SAM . . . F 2 -11.954 1.729 42.359 1 31.68 ? C4 SAM 201 D 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #