data_5TWK
#
_model_server_result.job_id            bCf14zNquzsOuuDplttE0Q 
_model_server_result.datetime_utc      '2024-11-04 23:02:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5twk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    5TWK 
#
_exptl.entry_id    5TWK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              381.387 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SINEFUNGIN 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.74 
_cell.angle_gamma         90 
_cell.entry_id            5TWK 
_cell.length_a            66.37 
_cell.length_b            37.95 
_cell.length_c            121.82 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TWK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C15 H23 N7 O5' 
_chem_comp.formula_weight    381.387 
_chem_comp.id                SFG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SINEFUNGIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ADENOSYL-ORNITHINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SFG sing 290 n n 
N HN1 SFG sing 291 n n 
N HN2 SFG sing 292 n n 
CA C SFG sing 293 n n 
CA CB SFG sing 294 n n 
CA HA SFG sing 295 n n 
C O SFG doub 296 n n 
C OXT SFG sing 297 n n 
OXT HXT SFG sing 298 n n 
CB CG SFG sing 299 n n 
CB HB1 SFG sing 300 n n 
CB HB2 SFG sing 301 n n 
CG CD SFG sing 302 n n 
CG HG1 SFG sing 303 n n 
CG HG2 SFG sing 304 n n 
CD NE SFG sing 305 n n 
CD C5' SFG sing 306 n n 
CD HD SFG sing 307 n n 
NE HNE1 SFG sing 308 n n 
NE HNE2 SFG sing 309 n n 
C5' C4' SFG sing 310 n n 
C5' "H5'1" SFG sing 311 n n 
C5' "H5'2" SFG sing 312 n n 
C4' O4' SFG sing 313 n n 
C4' C3' SFG sing 314 n n 
C4' H4' SFG sing 315 n n 
O4' C1' SFG sing 316 n n 
C3' O3' SFG sing 317 n n 
C3' C2' SFG sing 318 n n 
C3' H3' SFG sing 319 n n 
O3' HO3' SFG sing 320 n n 
C2' O2' SFG sing 321 n n 
C2' C1' SFG sing 322 n n 
C2' H2' SFG sing 323 n n 
O2' HO2' SFG sing 324 n n 
C1' N9 SFG sing 325 n n 
C1' H1' SFG sing 326 n n 
N9 C8 SFG sing 327 n y 
N9 C4 SFG sing 328 n y 
C8 N7 SFG doub 329 n y 
C8 H8 SFG sing 330 n n 
N7 C5 SFG sing 331 n y 
C5 C6 SFG sing 332 n y 
C5 C4 SFG doub 333 n y 
C6 N6 SFG sing 334 n n 
C6 N1 SFG doub 335 n y 
N6 HN61 SFG sing 336 n n 
N6 HN62 SFG sing 337 n n 
N1 C2 SFG sing 338 n y 
C2 N3 SFG doub 339 n y 
C2 H2 SFG sing 340 n n 
N3 C4 SFG sing 341 n y 
#
_atom_sites.entry_id                     5TWK 
_atom_sites.fract_transf_matrix[1][1]    0.015067 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004247 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02635 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008529 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SFG C 1 201 2 SFG SFG . 
F 2 SFG D 1 201 4 SFG SFG . 
G 2 SFG A 1 201 3 SFG SFG . 
H 2 SFG B 1 201 1 SFG SFG . 
I 3 HOH C 1 301 71 HOH HOH . 
I 3 HOH C 2 302 266 HOH HOH . 
I 3 HOH C 3 303 310 HOH HOH . 
I 3 HOH C 4 304 285 HOH HOH . 
I 3 HOH C 5 305 24 HOH HOH . 
I 3 HOH C 6 306 79 HOH HOH . 
I 3 HOH C 7 307 69 HOH HOH . 
I 3 HOH C 8 308 114 HOH HOH . 
I 3 HOH C 9 309 137 HOH HOH . 
I 3 HOH C 10 310 134 HOH HOH . 
I 3 HOH C 11 311 56 HOH HOH . 
I 3 HOH C 12 312 106 HOH HOH . 
I 3 HOH C 13 313 156 HOH HOH . 
I 3 HOH C 14 314 267 HOH HOH . 
I 3 HOH C 15 315 25 HOH HOH . 
I 3 HOH C 16 316 6 HOH HOH . 
I 3 HOH C 17 317 243 HOH HOH . 
I 3 HOH C 18 318 41 HOH HOH . 
I 3 HOH C 19 319 18 HOH HOH . 
I 3 HOH C 20 320 250 HOH HOH . 
I 3 HOH C 21 321 108 HOH HOH . 
I 3 HOH C 22 322 32 HOH HOH . 
I 3 HOH C 23 323 256 HOH HOH . 
I 3 HOH C 24 324 185 HOH HOH . 
I 3 HOH C 25 325 234 HOH HOH . 
I 3 HOH C 26 326 37 HOH HOH . 
I 3 HOH C 27 327 172 HOH HOH . 
I 3 HOH C 28 328 216 HOH HOH . 
I 3 HOH C 29 329 145 HOH HOH . 
I 3 HOH C 30 330 284 HOH HOH . 
I 3 HOH C 31 331 294 HOH HOH . 
I 3 HOH C 32 332 193 HOH HOH . 
I 3 HOH C 33 333 57 HOH HOH . 
I 3 HOH C 34 334 342 HOH HOH . 
I 3 HOH C 35 335 318 HOH HOH . 
I 3 HOH C 36 336 51 HOH HOH . 
I 3 HOH C 37 337 136 HOH HOH . 
I 3 HOH C 38 338 155 HOH HOH . 
I 3 HOH C 39 339 287 HOH HOH . 
I 3 HOH C 40 340 119 HOH HOH . 
I 3 HOH C 41 341 264 HOH HOH . 
I 3 HOH C 42 342 146 HOH HOH . 
I 3 HOH C 43 343 198 HOH HOH . 
J 3 HOH D 1 301 291 HOH HOH . 
J 3 HOH D 2 302 280 HOH HOH . 
J 3 HOH D 3 303 293 HOH HOH . 
J 3 HOH D 4 304 184 HOH HOH . 
J 3 HOH D 5 305 158 HOH HOH . 
J 3 HOH D 6 306 17 HOH HOH . 
J 3 HOH D 7 307 75 HOH HOH . 
J 3 HOH D 8 308 335 HOH HOH . 
J 3 HOH D 9 309 246 HOH HOH . 
J 3 HOH D 10 310 228 HOH HOH . 
J 3 HOH D 11 311 80 HOH HOH . 
J 3 HOH D 12 312 229 HOH HOH . 
J 3 HOH D 13 313 341 HOH HOH . 
J 3 HOH D 14 314 166 HOH HOH . 
J 3 HOH D 15 315 9 HOH HOH . 
J 3 HOH D 16 316 43 HOH HOH . 
J 3 HOH D 17 317 343 HOH HOH . 
J 3 HOH D 18 318 10 HOH HOH . 
J 3 HOH D 19 319 50 HOH HOH . 
J 3 HOH D 20 320 328 HOH HOH . 
J 3 HOH D 21 321 5 HOH HOH . 
J 3 HOH D 22 322 271 HOH HOH . 
J 3 HOH D 23 323 265 HOH HOH . 
J 3 HOH D 24 324 8 HOH HOH . 
J 3 HOH D 25 325 78 HOH HOH . 
J 3 HOH D 26 326 340 HOH HOH . 
J 3 HOH D 27 327 40 HOH HOH . 
J 3 HOH D 28 328 20 HOH HOH . 
J 3 HOH D 29 329 91 HOH HOH . 
J 3 HOH D 30 330 85 HOH HOH . 
J 3 HOH D 31 331 165 HOH HOH . 
J 3 HOH D 32 332 210 HOH HOH . 
J 3 HOH D 33 333 21 HOH HOH . 
J 3 HOH D 34 334 63 HOH HOH . 
J 3 HOH D 35 335 211 HOH HOH . 
J 3 HOH D 36 336 299 HOH HOH . 
J 3 HOH D 37 337 279 HOH HOH . 
J 3 HOH D 38 338 58 HOH HOH . 
J 3 HOH D 39 339 87 HOH HOH . 
J 3 HOH D 40 340 86 HOH HOH . 
J 3 HOH D 41 341 83 HOH HOH . 
J 3 HOH D 42 342 191 HOH HOH . 
J 3 HOH D 43 343 334 HOH HOH . 
J 3 HOH D 44 344 151 HOH HOH . 
J 3 HOH D 45 345 325 HOH HOH . 
J 3 HOH D 46 346 203 HOH HOH . 
J 3 HOH D 47 347 269 HOH HOH . 
J 3 HOH D 48 348 254 HOH HOH . 
J 3 HOH D 49 349 338 HOH HOH . 
J 3 HOH D 50 350 154 HOH HOH . 
J 3 HOH D 51 351 283 HOH HOH . 
J 3 HOH D 52 352 42 HOH HOH . 
J 3 HOH D 53 353 322 HOH HOH . 
J 3 HOH D 54 354 263 HOH HOH . 
J 3 HOH D 55 355 110 HOH HOH . 
K 3 HOH A 1 301 14 HOH HOH . 
K 3 HOH A 2 302 196 HOH HOH . 
K 3 HOH A 3 303 138 HOH HOH . 
K 3 HOH A 4 304 98 HOH HOH . 
K 3 HOH A 5 305 261 HOH HOH . 
K 3 HOH A 6 306 81 HOH HOH . 
K 3 HOH A 7 307 31 HOH HOH . 
K 3 HOH A 8 308 197 HOH HOH . 
K 3 HOH A 9 309 44 HOH HOH . 
K 3 HOH A 10 310 326 HOH HOH . 
K 3 HOH A 11 311 67 HOH HOH . 
K 3 HOH A 12 312 11 HOH HOH . 
K 3 HOH A 13 313 128 HOH HOH . 
K 3 HOH A 14 314 121 HOH HOH . 
K 3 HOH A 15 315 111 HOH HOH . 
K 3 HOH A 16 316 1 HOH HOH . 
K 3 HOH A 17 317 92 HOH HOH . 
K 3 HOH A 18 318 35 HOH HOH . 
K 3 HOH A 19 319 13 HOH HOH . 
K 3 HOH A 20 320 100 HOH HOH . 
K 3 HOH A 21 321 227 HOH HOH . 
K 3 HOH A 22 322 16 HOH HOH . 
K 3 HOH A 23 323 233 HOH HOH . 
K 3 HOH A 24 324 127 HOH HOH . 
K 3 HOH A 25 325 125 HOH HOH . 
K 3 HOH A 26 326 177 HOH HOH . 
K 3 HOH A 27 327 2 HOH HOH . 
K 3 HOH A 28 328 65 HOH HOH . 
K 3 HOH A 29 329 259 HOH HOH . 
K 3 HOH A 30 330 26 HOH HOH . 
K 3 HOH A 31 331 179 HOH HOH . 
K 3 HOH A 32 332 181 HOH HOH . 
K 3 HOH A 33 333 183 HOH HOH . 
K 3 HOH A 34 334 46 HOH HOH . 
K 3 HOH A 35 335 286 HOH HOH . 
K 3 HOH A 36 336 105 HOH HOH . 
K 3 HOH A 37 337 200 HOH HOH . 
K 3 HOH A 38 338 72 HOH HOH . 
K 3 HOH A 39 339 95 HOH HOH . 
K 3 HOH A 40 340 288 HOH HOH . 
K 3 HOH A 41 341 94 HOH HOH . 
K 3 HOH A 42 342 327 HOH HOH . 
K 3 HOH A 43 343 73 HOH HOH . 
K 3 HOH A 44 344 153 HOH HOH . 
K 3 HOH A 45 345 189 HOH HOH . 
K 3 HOH A 46 346 249 HOH HOH . 
K 3 HOH A 47 347 330 HOH HOH . 
K 3 HOH A 48 348 253 HOH HOH . 
K 3 HOH A 49 349 104 HOH HOH . 
K 3 HOH A 50 350 319 HOH HOH . 
K 3 HOH A 51 351 273 HOH HOH . 
K 3 HOH A 52 352 296 HOH HOH . 
K 3 HOH A 53 353 27 HOH HOH . 
K 3 HOH A 54 354 19 HOH HOH . 
L 3 HOH B 1 301 82 HOH HOH . 
L 3 HOH B 2 302 101 HOH HOH . 
L 3 HOH B 3 303 300 HOH HOH . 
L 3 HOH B 4 304 206 HOH HOH . 
L 3 HOH B 5 305 144 HOH HOH . 
L 3 HOH B 6 306 55 HOH HOH . 
L 3 HOH B 7 307 49 HOH HOH . 
L 3 HOH B 8 308 323 HOH HOH . 
L 3 HOH B 9 309 70 HOH HOH . 
L 3 HOH B 10 310 48 HOH HOH . 
L 3 HOH B 11 311 29 HOH HOH . 
L 3 HOH B 12 312 116 HOH HOH . 
L 3 HOH B 13 313 52 HOH HOH . 
L 3 HOH B 14 314 54 HOH HOH . 
L 3 HOH B 15 315 23 HOH HOH . 
L 3 HOH B 16 316 231 HOH HOH . 
L 3 HOH B 17 317 61 HOH HOH . 
L 3 HOH B 18 318 163 HOH HOH . 
L 3 HOH B 19 319 15 HOH HOH . 
L 3 HOH B 20 320 7 HOH HOH . 
L 3 HOH B 21 321 115 HOH HOH . 
L 3 HOH B 22 322 292 HOH HOH . 
L 3 HOH B 23 323 28 HOH HOH . 
L 3 HOH B 24 324 12 HOH HOH . 
L 3 HOH B 25 325 22 HOH HOH . 
L 3 HOH B 26 326 47 HOH HOH . 
L 3 HOH B 27 327 4 HOH HOH . 
L 3 HOH B 28 328 59 HOH HOH . 
L 3 HOH B 29 329 3 HOH HOH . 
L 3 HOH B 30 330 149 HOH HOH . 
L 3 HOH B 31 331 33 HOH HOH . 
L 3 HOH B 32 332 167 HOH HOH . 
L 3 HOH B 33 333 53 HOH HOH . 
L 3 HOH B 34 334 208 HOH HOH . 
L 3 HOH B 35 335 39 HOH HOH . 
L 3 HOH B 36 336 45 HOH HOH . 
L 3 HOH B 37 337 36 HOH HOH . 
L 3 HOH B 38 338 141 HOH HOH . 
L 3 HOH B 39 339 337 HOH HOH . 
L 3 HOH B 40 340 76 HOH HOH . 
L 3 HOH B 41 341 38 HOH HOH . 
L 3 HOH B 42 342 237 HOH HOH . 
L 3 HOH B 43 343 336 HOH HOH . 
L 3 HOH B 44 344 131 HOH HOH . 
L 3 HOH B 45 345 315 HOH HOH . 
L 3 HOH B 46 346 99 HOH HOH . 
L 3 HOH B 47 347 126 HOH HOH . 
L 3 HOH B 48 348 77 HOH HOH . 
L 3 HOH B 49 349 333 HOH HOH . 
L 3 HOH B 50 350 123 HOH HOH . 
L 3 HOH B 51 351 147 HOH HOH . 
L 3 HOH B 52 352 68 HOH HOH . 
L 3 HOH B 53 353 241 HOH HOH . 
L 3 HOH B 54 354 96 HOH HOH . 
L 3 HOH B 55 355 62 HOH HOH . 
L 3 HOH B 56 356 34 HOH HOH . 
L 3 HOH B 57 357 212 HOH HOH . 
L 3 HOH B 58 358 148 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SFG . . . E 2 10.62 16.28 -44.519 1 93.85 ? N SFG 201 C 1 
HETATM 2 C CA SFG . . . E 2 9.267 16.24 -43.946 1 98.22 ? CA SFG 201 C 1 
HETATM 3 C C SFG . . . E 2 9.213 17.118 -42.717 1 106.37 ? C SFG 201 C 1 
HETATM 4 O O SFG . . . E 2 10.172 17.179 -41.983 1 110.91 ? O SFG 201 C 1 
HETATM 5 O OXT SFG . . . E 2 8.043 17.639 -42.314 1 102.01 ? OXT SFG 201 C 1 
HETATM 6 C CB SFG . . . E 2 8.889 14.807 -43.544 1 89.44 ? CB SFG 201 C 1 
HETATM 7 C CG SFG . . . E 2 9.201 13.807 -44.663 1 72.82 ? CG SFG 201 C 1 
HETATM 8 C CD SFG . . . E 2 8.04 12.819 -44.829 1 51.12 ? CD SFG 201 C 1 
HETATM 9 N NE SFG . . . E 2 7.775 12.123 -43.553 1 59.19 ? NE SFG 201 C 1 
HETATM 10 C C5' SFG . . . E 2 8.387 11.8 -45.916 1 42.2 ? C5' SFG 201 C 1 
HETATM 11 C C4' SFG . . . E 2 7.611 12.101 -47.207 1 41.05 ? C4' SFG 201 C 1 
HETATM 12 O O4' SFG . . . E 2 6.186 11.931 -47.045 1 41.62 ? O4' SFG 201 C 1 
HETATM 13 C C3' SFG . . . E 2 7.816 13.571 -47.632 1 38.78 ? C3' SFG 201 C 1 
HETATM 14 O O3' SFG . . . E 2 8.982 13.722 -48.438 1 53.77 ? O3' SFG 201 C 1 
HETATM 15 C C2' SFG . . . E 2 6.572 13.794 -48.523 1 40.3 ? C2' SFG 201 C 1 
HETATM 16 O O2' SFG . . . E 2 6.859 13.319 -49.839 1 41.7 ? O2' SFG 201 C 1 
HETATM 17 C C1' SFG . . . E 2 5.487 12.884 -47.892 1 35.94 ? C1' SFG 201 C 1 
HETATM 18 N N9 SFG . . . E 2 4.524 13.695 -47.131 1 36.29 ? N9 SFG 201 C 1 
HETATM 19 C C8 SFG . . . E 2 4.435 13.762 -45.762 1 33.86 ? C8 SFG 201 C 1 
HETATM 20 N N7 SFG . . . E 2 3.48 14.572 -45.418 1 32.13 ? N7 SFG 201 C 1 
HETATM 21 C C5 SFG . . . E 2 2.89 15.072 -46.546 1 37.09 ? C5 SFG 201 C 1 
HETATM 22 C C6 SFG . . . E 2 1.826 15.959 -46.79 1 36.28 ? C6 SFG 201 C 1 
HETATM 23 N N6 SFG . . . E 2 1.152 16.534 -45.734 1 28.92 ? N6 SFG 201 C 1 
HETATM 24 N N1 SFG . . . E 2 1.489 16.241 -48.051 1 31.82 ? N1 SFG 201 C 1 
HETATM 25 C C2 SFG . . . E 2 2.155 15.702 -49.068 1 40.01 ? C2 SFG 201 C 1 
HETATM 26 N N3 SFG . . . E 2 3.155 14.853 -48.892 1 36.61 ? N3 SFG 201 C 1 
HETATM 27 C C4 SFG . . . E 2 3.554 14.519 -47.655 1 30.29 ? C4 SFG 201 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#