data_5TWL # _model_server_result.job_id ok9s6pa9SYYAFg8N5o8N6Q _model_server_result.datetime_utc '2024-10-18 17:25:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5twl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 5TWL # _exptl.entry_id 5TWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 499.432 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-(3,5-dichloro-4-hydroxyphenyl)-1-{trans-4-[(dimethylamino)methyl]cyclohexyl}-3,4-dihydropyrimido[5,4-c]quinolin-2(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TWL _cell.length_a 57.52 _cell.length_b 68.3 _cell.length_c 104.95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H28 Cl2 N4 O2' _chem_comp.formula_weight 499.432 _chem_comp.id H91 _chem_comp.mon_nstd_flag . _chem_comp.name 9-(3,5-dichloro-4-hydroxyphenyl)-1-{trans-4-[(dimethylamino)methyl]cyclohexyl}-3,4-dihydropyrimido[5,4-c]quinolin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N H91 sing 129 n n N C H91 sing 130 n n N C2 H91 sing 131 n n O1 C23 H91 sing 132 n n C2 C3 H91 sing 133 n n CL1 C24 H91 sing 134 n n C23 C24 H91 doub 135 n y C23 C22 H91 sing 136 n y CL C22 H91 sing 137 n n C24 C25 H91 sing 138 n y C3 C4 H91 sing 139 n n C3 C8 H91 sing 140 n n C22 C21 H91 doub 141 n y C4 C5 H91 sing 142 n n C8 C7 H91 sing 143 n n C25 C20 H91 doub 144 n y C21 C20 H91 sing 145 n y C20 C16 H91 sing 146 n n C5 C6 H91 sing 147 n n C7 C6 H91 sing 148 n n C6 N1 H91 sing 149 n n C16 C17 H91 doub 150 n y C16 C15 H91 sing 151 n y C17 C18 H91 sing 152 n y C15 C14 H91 doub 153 n y N1 C19 H91 sing 154 n n N1 C9 H91 sing 155 n n C18 C19 H91 doub 156 n y C18 C13 H91 sing 157 n y O C9 H91 doub 158 n n C19 C11 H91 sing 159 n y C14 C13 H91 sing 160 n y C9 N2 H91 sing 161 n n C13 N3 H91 doub 162 n y C11 C10 H91 sing 163 n n C11 C12 H91 doub 164 n y N2 C10 H91 sing 165 n n N3 C12 H91 sing 166 n y C H2 H91 sing 167 n n C H3 H91 sing 168 n n C H4 H91 sing 169 n n C1 H5 H91 sing 170 n n C1 H6 H91 sing 171 n n C1 H7 H91 sing 172 n n C10 H8 H91 sing 173 n n C10 H9 H91 sing 174 n n C12 H10 H91 sing 175 n n C14 H11 H91 sing 176 n n C15 H12 H91 sing 177 n n C17 H13 H91 sing 178 n n C2 H14 H91 sing 179 n n C2 H15 H91 sing 180 n n C21 H16 H91 sing 181 n n C25 H17 H91 sing 182 n n C3 H18 H91 sing 183 n n C4 H19 H91 sing 184 n n C4 H20 H91 sing 185 n n C5 H21 H91 sing 186 n n C5 H22 H91 sing 187 n n C6 H23 H91 sing 188 n n C7 H24 H91 sing 189 n n C7 H25 H91 sing 190 n n C8 H26 H91 sing 191 n n C8 H27 H91 sing 192 n n N2 H28 H91 sing 193 n n O1 H29 H91 sing 194 n n # _atom_sites.entry_id 5TWL _atom_sites.fract_transf_matrix[1][1] 0.017385 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H91 A 1 4000 4000 H91 H91 . C 3 HOH A 1 4101 12 HOH HOH . C 3 HOH A 2 4102 32 HOH HOH . C 3 HOH A 3 4103 16 HOH HOH . C 3 HOH A 4 4104 14 HOH HOH . C 3 HOH A 5 4105 15 HOH HOH . C 3 HOH A 6 4106 10 HOH HOH . C 3 HOH A 7 4107 20 HOH HOH . C 3 HOH A 8 4108 5 HOH HOH . C 3 HOH A 9 4109 36 HOH HOH . C 3 HOH A 10 4110 13 HOH HOH . C 3 HOH A 11 4111 23 HOH HOH . C 3 HOH A 12 4112 3 HOH HOH . C 3 HOH A 13 4113 30 HOH HOH . C 3 HOH A 14 4114 2 HOH HOH . C 3 HOH A 15 4115 29 HOH HOH . C 3 HOH A 16 4116 27 HOH HOH . C 3 HOH A 17 4117 9 HOH HOH . C 3 HOH A 18 4118 6 HOH HOH . C 3 HOH A 19 4119 35 HOH HOH . C 3 HOH A 20 4120 22 HOH HOH . C 3 HOH A 21 4121 25 HOH HOH . C 3 HOH A 22 4122 4 HOH HOH . C 3 HOH A 23 4123 19 HOH HOH . C 3 HOH A 24 4124 33 HOH HOH . C 3 HOH A 25 4125 21 HOH HOH . C 3 HOH A 26 4126 11 HOH HOH . C 3 HOH A 27 4127 7 HOH HOH . C 3 HOH A 28 4128 34 HOH HOH . C 3 HOH A 29 4129 8 HOH HOH . C 3 HOH A 30 4130 18 HOH HOH . C 3 HOH A 31 4131 1 HOH HOH . C 3 HOH A 32 4132 17 HOH HOH . C 3 HOH A 33 4133 28 HOH HOH . C 3 HOH A 34 4134 31 HOH HOH . C 3 HOH A 35 4135 26 HOH HOH . C 3 HOH A 36 4136 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N H91 . . . B 2 -3.742 14.077 -9.026 1 60.64 ? N H91 4000 A 1 HETATM 2 C C H91 . . . B 2 -3.514 15.539 -8.858 1 60.55 ? C H91 4000 A 1 HETATM 3 O O H91 . . . B 2 -3.346 14.075 -2.153 1 53.06 ? O H91 4000 A 1 HETATM 4 C C1 H91 . . . B 2 -3.793 13.748 -10.478 1 60.5 ? C1 H91 4000 A 1 HETATM 5 C C10 H91 . . . B 2 -1.556 11.474 -0.448 1 44.51 ? C10 H91 4000 A 1 HETATM 6 C C11 H91 . . . B 2 -2.473 10.397 -0.939 1 44.86 ? C11 H91 4000 A 1 HETATM 7 C C12 H91 . . . B 2 -2.537 9.19 -0.195 1 42.7 ? C12 H91 4000 A 1 HETATM 8 C C13 H91 . . . B 2 -4.067 8.299 -1.666 1 44.32 ? C13 H91 4000 A 1 HETATM 9 C C14 H91 . . . B 2 -4.864 7.157 -1.989 1 46.6 ? C14 H91 4000 A 1 HETATM 10 C C15 H91 . . . B 2 -5.667 7.154 -3.093 1 48.96 ? C15 H91 4000 A 1 HETATM 11 C C16 H91 . . . B 2 -5.696 8.303 -3.91 1 51.28 ? C16 H91 4000 A 1 HETATM 12 C C17 H91 . . . B 2 -4.942 9.396 -3.607 1 45.97 ? C17 H91 4000 A 1 HETATM 13 C C18 H91 . . . B 2 -4.089 9.456 -2.483 1 43.56 ? C18 H91 4000 A 1 HETATM 14 C C19 H91 . . . B 2 -3.237 10.567 -2.092 1 45.42 ? C19 H91 4000 A 1 HETATM 15 C C2 H91 . . . B 2 -2.658 13.288 -8.363 1 49.5 ? C2 H91 4000 A 1 HETATM 16 C C20 H91 . . . B 2 -6.518 8.364 -5.113 1 55.95 ? C20 H91 4000 A 1 HETATM 17 C C21 H91 . . . B 2 -6.891 9.634 -5.563 1 55.29 ? C21 H91 4000 A 1 HETATM 18 C C22 H91 . . . B 2 -7.654 9.756 -6.705 1 59.45 ? C22 H91 4000 A 1 HETATM 19 C C23 H91 . . . B 2 -8.066 8.626 -7.418 1 58.34 ? C23 H91 4000 A 1 HETATM 20 C C24 H91 . . . B 2 -7.676 7.371 -6.947 1 62.7 ? C24 H91 4000 A 1 HETATM 21 C C25 H91 . . . B 2 -6.907 7.224 -5.802 1 60.28 ? C25 H91 4000 A 1 HETATM 22 C C3 H91 . . . B 2 -2.809 13.387 -6.824 1 42.41 ? C3 H91 4000 A 1 HETATM 23 C C4 H91 . . . B 2 -4.145 12.805 -6.353 1 40.73 ? C4 H91 4000 A 1 HETATM 24 C C5 H91 . . . B 2 -4.237 12.826 -4.815 1 40.43 ? C5 H91 4000 A 1 HETATM 25 C C6 H91 . . . B 2 -3.037 12.032 -4.237 1 41.71 ? C6 H91 4000 A 1 HETATM 26 C C7 H91 . . . B 2 -1.725 12.706 -4.677 1 43.94 ? C7 H91 4000 A 1 HETATM 27 C C8 H91 . . . B 2 -1.64 12.615 -6.199 1 43.19 ? C8 H91 4000 A 1 HETATM 28 C C9 H91 . . . B 2 -2.881 12.965 -1.906 1 47.46 ? C9 H91 4000 A 1 HETATM 29 N N1 H91 . . . B 2 -3.07 11.818 -2.753 1 46.14 ? N1 H91 4000 A 1 HETATM 30 N N2 H91 . . . B 2 -2.125 12.781 -0.757 1 46.03 ? N2 H91 4000 A 1 HETATM 31 N N3 H91 . . . B 2 -3.295 8.161 -0.522 1 46.33 ? N3 H91 4000 A 1 HETATM 32 O O1 H91 . . . B 2 -8.821 8.843 -8.51 1 54.35 ? O1 H91 4000 A 1 HETATM 33 CL CL H91 . . . B 2 -8.085 11.307 -7.247 1 65.81 ? CL H91 4000 A 1 HETATM 34 CL CL1 H91 . . . B 2 -8.159 5.972 -7.819 1 66.87 ? CL1 H91 4000 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #