data_5TWN # _model_server_result.job_id lGl3mkF0xkSmxo5D1TIsmQ _model_server_result.datetime_utc '2025-08-15 09:23:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5twn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":601}' # _entry.id 5TWN # _exptl.entry_id 5TWN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 630.732 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E)-3-(4-{[(1-{[(13-cyclohexyl-6-oxo-6,7-dihydro-5H-indolo[1,2-d][1,4]benzodiazepin-10-yl)carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-enoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TWN _cell.length_a 66 _cell.length_b 91.1 _cell.length_c 233.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TWN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I 1 1 B,J,K,L,M,N,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # _chem_comp.formula 'C38 H38 N4 O5' _chem_comp.formula_weight 630.732 _chem_comp.id 23E _chem_comp.mon_nstd_flag . _chem_comp.name '(2E)-3-(4-{[(1-{[(13-cyclohexyl-6-oxo-6,7-dihydro-5H-indolo[1,2-d][1,4]benzodiazepin-10-yl)carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 23E sing 1 n n N1 C21 23E sing 2 n n N1 HN1 23E sing 3 n n C17 C2 23E sing 4 n n C3 C2 23E sing 5 n n C16 C2 23E sing 6 n n O6 C3 23E doub 7 n n C3 N4 23E sing 8 n n C5 N4 23E sing 9 n n N4 HN4 23E sing 10 n n C7 C5 23E doub 11 n y C11 C5 23E sing 12 n y C8 C7 23E sing 13 n y C7 H7 23E sing 14 n n C9 C8 23E doub 15 n y C8 H8 23E sing 16 n n C12 C9 23E sing 17 n n C9 C10 23E sing 18 n y C10 C11 23E doub 19 n y C10 H10 23E sing 20 e n C11 H11 23E sing 21 n n C12 C13 23E doub 22 n n C12 H12 23E sing 23 n n C14 C13 23E sing 24 n n C13 H13 23E sing 25 n n O15 C14 23E doub 26 n n C14 O20 23E sing 27 n n C18 C16 23E sing 28 n n C16 H16 23E sing 29 n n C16 H16A 23E sing 30 n n C19 C17 23E sing 31 n n C17 H17 23E sing 32 n n C17 H17A 23E sing 33 n n C19 C18 23E sing 34 n n C18 H18 23E sing 35 n n C18 H18A 23E sing 36 n n C19 H19 23E sing 37 n n C19 H19A 23E sing 38 n n O20 HO20 23E sing 39 n n O38 C21 23E doub 40 n n C21 C22 23E sing 41 n n C22 C25 23E doub 42 n y C22 C23 23E sing 43 n y C23 C24 23E doub 44 n y C23 H23 23E sing 45 n n C24 C28 23E sing 46 n y C24 H24 23E sing 47 n n C25 C27 23E sing 48 n y C25 H25 23E sing 49 n n C44 N26 23E sing 50 n n C27 N26 23E sing 51 n y N26 C30 23E sing 52 n y C27 C28 23E doub 53 n y C28 C29 23E sing 54 n y C30 C29 23E doub 55 n y C29 C31 23E sing 56 n n C30 C32 23E sing 57 n y C31 C37 23E sing 58 n n C31 C33 23E sing 59 n n C31 H31 23E sing 60 n n C43 C32 23E doub 61 n y C32 C39 23E sing 62 n y C33 C34 23E sing 63 n n C33 H33 23E sing 64 n n C33 H33A 23E sing 65 n n C35 C34 23E sing 66 n n C34 H34 23E sing 67 n n C34 H34A 23E sing 68 n n C36 C35 23E sing 69 n n C35 H35 23E sing 70 n n C35 H35A 23E sing 71 n n C37 C36 23E sing 72 n n C36 H36 23E sing 73 n n C36 H36A 23E sing 74 n n C37 H37 23E sing 75 n n C37 H37A 23E sing 76 n n C39 C40 23E doub 77 n y C39 H39 23E sing 78 n n C41 C40 23E sing 79 n y C40 H40 23E sing 80 n n C42 C41 23E doub 81 n y C41 H41 23E sing 82 n n C43 C42 23E sing 83 n y C42 H42 23E sing 84 n n N45 C43 23E sing 85 n n C44 C46 23E sing 86 n n C44 H44 23E sing 87 n n C44 H44A 23E sing 88 n n C46 N45 23E sing 89 n n N45 HN45 23E sing 90 n n O47 C46 23E doub 91 n n # _atom_sites.entry_id 5TWN _atom_sites.fract_transf_matrix[1][1] 0.015152 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 23E A 1 601 1 23E 23E . D 3 SO4 A 1 602 1 SO4 SO4 . E 3 SO4 A 1 603 3 SO4 SO4 . F 3 SO4 A 1 604 4 SO4 SO4 . G 3 SO4 A 1 605 6 SO4 SO4 . H 3 SO4 A 1 606 8 SO4 SO4 . I 3 SO4 A 1 607 12 SO4 SO4 . J 2 23E B 1 601 2 23E 23E . K 4 7NG B 1 602 2 7NG LG1 . L 3 SO4 B 1 603 2 SO4 SO4 . M 3 SO4 B 1 604 5 SO4 SO4 . N 3 SO4 B 1 605 7 SO4 SO4 . O 3 SO4 B 1 606 9 SO4 SO4 . P 3 SO4 B 1 607 10 SO4 SO4 . Q 3 SO4 B 1 608 11 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 23E . . . J 2 13.98 0.683 102.889 1 50.29 ? N1 23E 601 B 1 HETATM 2 C C2 23E . . . J 2 14.109 0.676 104.339 1 51.1 ? C2 23E 601 B 1 HETATM 3 C C3 23E . . . J 2 14.718 1.979 104.88 1 54.16 ? C3 23E 601 B 1 HETATM 4 N N4 23E . . . J 2 14.103 3.123 104.466 1 53.16 ? N4 23E 601 B 1 HETATM 5 C C5 23E . . . J 2 14.328 4.443 104.935 1 48.13 ? C5 23E 601 B 1 HETATM 6 O O6 23E . . . J 2 15.67 1.943 105.649 1 55.05 ? O6 23E 601 B 1 HETATM 7 C C7 23E . . . J 2 13.378 5.423 104.675 1 43.56 ? C7 23E 601 B 1 HETATM 8 C C8 23E . . . J 2 13.585 6.727 105.092 1 43.3 ? C8 23E 601 B 1 HETATM 9 C C9 23E . . . J 2 14.74 7.092 105.784 1 51.08 ? C9 23E 601 B 1 HETATM 10 C C10 23E . . . J 2 15.683 6.093 106.042 1 50.32 ? C10 23E 601 B 1 HETATM 11 C C11 23E . . . J 2 15.493 4.794 105.612 1 48.25 ? C11 23E 601 B 1 HETATM 12 C C12 23E . . . J 2 14.979 8.484 106.189 1 59.53 ? C12 23E 601 B 1 HETATM 13 C C13 23E . . . J 2 16.054 8.964 106.83 1 67.68 ? C13 23E 601 B 1 HETATM 14 C C14 23E . . . J 2 16.197 10.38 107.249 1 74.62 ? C14 23E 601 B 1 HETATM 15 O O15 23E . . . J 2 15.287 11.176 107.04 1 79.03 ? O15 23E 601 B 1 HETATM 16 C C16 23E . . . J 2 14.882 -0.581 104.775 1 51.76 ? C16 23E 601 B 1 HETATM 17 C C17 23E . . . J 2 12.736 0.463 104.999 1 51.49 ? C17 23E 601 B 1 HETATM 18 C C18 23E . . . J 2 14.243 -0.998 106.096 1 52.46 ? C18 23E 601 B 1 HETATM 19 C C19 23E . . . J 2 13.082 -0.037 106.358 1 50.19 ? C19 23E 601 B 1 HETATM 20 O O20 23E . . . J 2 17.308 10.721 107.867 1 75.15 ? O20 23E 601 B 1 HETATM 21 C C21 23E . . . J 2 14.94 1.158 102.071 1 46.96 ? C21 23E 601 B 1 HETATM 22 C C22 23E . . . J 2 14.626 1.177 100.606 1 47.27 ? C22 23E 601 B 1 HETATM 23 C C23 23E . . . J 2 15.614 0.846 99.679 1 50.07 ? C23 23E 601 B 1 HETATM 24 C C24 23E . . . J 2 15.351 0.873 98.322 1 53.67 ? C24 23E 601 B 1 HETATM 25 C C25 23E . . . J 2 13.352 1.537 100.16 1 45.89 ? C25 23E 601 B 1 HETATM 26 N N26 23E . . . J 2 11.893 1.713 98.117 1 53.29 ? N26 23E 601 B 1 HETATM 27 C C27 23E . . . J 2 13.089 1.519 98.799 1 48.87 ? C27 23E 601 B 1 HETATM 28 C C28 23E . . . J 2 14.068 1.174 97.86 1 51.95 ? C28 23E 601 B 1 HETATM 29 C C29 23E . . . J 2 13.421 1.139 96.57 1 50 ? C29 23E 601 B 1 HETATM 30 C C30 23E . . . J 2 12.107 1.458 96.773 1 52.68 ? C30 23E 601 B 1 HETATM 31 C C31 23E . . . J 2 14.081 0.864 95.257 1 49.06 ? C31 23E 601 B 1 HETATM 32 C C32 23E . . . J 2 10.97 1.474 95.838 1 57.65 ? C32 23E 601 B 1 HETATM 33 C C33 23E . . . J 2 15.087 1.966 94.907 1 48.7 ? C33 23E 601 B 1 HETATM 34 C C34 23E . . . J 2 15.743 1.713 93.555 1 50.38 ? C34 23E 601 B 1 HETATM 35 C C35 23E . . . J 2 16.426 0.366 93.526 1 54.12 ? C35 23E 601 B 1 HETATM 36 C C36 23E . . . J 2 15.441 -0.746 93.857 1 56.12 ? C36 23E 601 B 1 HETATM 37 C C37 23E . . . J 2 14.759 -0.509 95.204 1 53.28 ? C37 23E 601 B 1 HETATM 38 O O38 23E . . . J 2 16.009 1.583 102.501 1 42.91 ? O38 23E 601 B 1 HETATM 39 C C39 23E . . . J 2 11.109 2.077 94.585 1 62.05 ? C39 23E 601 B 1 HETATM 40 C C40 23E . . . J 2 10.083 2.013 93.656 1 62.58 ? C40 23E 601 B 1 HETATM 41 C C41 23E . . . J 2 8.903 1.375 93.969 1 61.89 ? C41 23E 601 B 1 HETATM 42 C C42 23E . . . J 2 8.737 0.78 95.208 1 61.12 ? C42 23E 601 B 1 HETATM 43 C C43 23E . . . J 2 9.757 0.829 96.159 1 57.8 ? C43 23E 601 B 1 HETATM 44 C C44 23E . . . J 2 10.605 2.084 98.707 1 55.61 ? C44 23E 601 B 1 HETATM 45 N N45 23E . . . J 2 9.484 0.263 97.428 1 54.85 ? N45 23E 601 B 1 HETATM 46 C C46 23E . . . J 2 9.788 0.784 98.641 1 57.83 ? C46 23E 601 B 1 HETATM 47 O O47 23E . . . J 2 9.426 0.23 99.676 1 61.4 ? O47 23E 601 B 1 HETATM 48 H HN1 23E . . . J 2 13.125 0.276 102.522 1 50.86 ? HN1 23E 601 B 1 HETATM 49 H HN4 23E . . . J 2 13.398 3.076 103.735 1 52.12 ? HN4 23E 601 B 1 HETATM 50 H H7 23E . . . J 2 12.475 5.172 104.121 1 43.8 ? H7 23E 601 B 1 HETATM 51 H H8 23E . . . J 2 12.827 7.479 104.879 1 42.57 ? H8 23E 601 B 1 HETATM 52 H H10 23E . . . J 2 16.599 6.3 106.593 1 50.07 ? H10 23E 601 B 1 HETATM 53 H H11 23E . . . J 2 16.325 4.112 105.78 1 47.33 ? H11 23E 601 B 1 HETATM 54 H H12 23E . . . J 2 14.174 9.158 105.899 1 59.05 ? H12 23E 601 B 1 HETATM 55 H H13 23E . . . J 2 16.89 8.324 107.107 1 67.49 ? H13 23E 601 B 1 HETATM 56 H H16 23E . . . J 2 14.852 -1.389 104.044 1 51.8 ? H16 23E 601 B 1 HETATM 57 H H16A 23E . . . J 2 15.952 -0.398 104.865 1 52.13 ? H16A 23E 601 B 1 HETATM 58 H H17 23E . . . J 2 12.169 1.39 105.069 1 52.21 ? H17 23E 601 B 1 HETATM 59 H H17A 23E . . . J 2 12.088 -0.208 104.438 1 52.01 ? H17A 23E 601 B 1 HETATM 60 H H18 23E . . . J 2 13.967 -2.051 106.102 1 52.36 ? H18 23E 601 B 1 HETATM 61 H H18A 23E . . . J 2 14.983 -0.918 106.892 1 53.27 ? H18A 23E 601 B 1 HETATM 62 H H19 23E . . . J 2 13.318 0.764 107.057 1 49.61 ? H19 23E 601 B 1 HETATM 63 H H19A 23E . . . J 2 12.227 -0.536 106.807 1 49.79 ? H19A 23E 601 B 1 HETATM 64 H HO20 23E . . . J 2 17.949 9.973 107.991 1 74.93 ? HO20 23E 601 B 1 HETATM 65 H H23 23E . . . J 2 16.611 0.535 99.988 1 49.71 ? H23 23E 601 B 1 HETATM 66 H H24 23E . . . J 2 16.168 0.682 97.628 1 54.33 ? H24 23E 601 B 1 HETATM 67 H H25 23E . . . J 2 12.585 1.828 100.875 1 46.67 ? H25 23E 601 B 1 HETATM 68 H H31 23E . . . J 2 13.328 0.834 94.472 1 48.3 ? H31 23E 601 B 1 HETATM 69 H H33 23E . . . J 2 14.604 2.941 94.925 1 48.82 ? H33 23E 601 B 1 HETATM 70 H H33A 23E . . . J 2 15.85 2.041 95.68 1 48.63 ? H33A 23E 601 B 1 HETATM 71 H H34 23E . . . J 2 15.003 1.774 92.759 1 50.9 ? H34 23E 601 B 1 HETATM 72 H H34A 23E . . . J 2 16.453 2.5 93.311 1 49.85 ? H34A 23E 601 B 1 HETATM 73 H H35 23E . . . J 2 16.894 0.201 92.557 1 54.13 ? H35 23E 601 B 1 HETATM 74 H H35A 23E . . . J 2 17.25 0.356 94.238 1 54.44 ? H35A 23E 601 B 1 HETATM 75 H H36 23E . . . J 2 14.68 -0.808 93.084 1 56.7 ? H36 23E 601 B 1 HETATM 76 H H36A 23E . . . J 2 15.937 -1.714 93.838 1 55.94 ? H36A 23E 601 B 1 HETATM 77 H H37 23E . . . J 2 15.491 -0.629 96 1 53.41 ? H37 23E 601 B 1 HETATM 78 H H37A 23E . . . J 2 14.02 -1.285 95.399 1 53.33 ? H37A 23E 601 B 1 HETATM 79 H H39 23E . . . J 2 12.025 2.612 94.342 1 62.33 ? H39 23E 601 B 1 HETATM 80 H H40 23E . . . J 2 10.228 2.461 92.675 1 62.27 ? H40 23E 601 B 1 HETATM 81 H H41 23E . . . J 2 8.089 1.34 93.246 1 61.89 ? H41 23E 601 B 1 HETATM 82 H H42 23E . . . J 2 7.802 0.263 95.417 1 62.16 ? H42 23E 601 B 1 HETATM 83 H H44 23E . . . J 2 10.709 2.42 99.736 1 55.28 ? H44 23E 601 B 1 HETATM 84 H H44A 23E . . . J 2 10.148 2.913 98.173 1 55.31 ? H44A 23E 601 B 1 HETATM 85 H HN45 23E . . . J 2 9.021 -0.64 97.411 1 53.63 ? HN45 23E 601 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 85 #