data_5TX3
#
_model_server_result.job_id            DFfSJVpohv5TvcsDUmewmA 
_model_server_result.datetime_utc      '2024-10-22 21:52:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tx3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    5TX3 
#
_exptl.entry_id    5TX3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              469.578 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-[(1S)-4-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-2-({3-[(pyrrolidin-1-yl)methyl]phenyl}amino)-5,7-dihydro-6H-pyrrolo[2,3-d]pyrimidin-6-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.86 
_cell.angle_gamma         90 
_cell.entry_id            5TX3 
_cell.length_a            64.62 
_cell.length_b            78.67 
_cell.length_c            78.96 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TX3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C28 H31 N5 O2' 
_chem_comp.formula_weight    469.578 
_chem_comp.id                7MY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-[(1S)-4-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-2-({3-[(pyrrolidin-1-yl)methyl]phenyl}amino)-5,7-dihydro-6H-pyrrolo[2,3-d]pyrimidin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAB CBI 7MY sing 1 n n 
CAF CAH 7MY doub 2 n y 
CAF CAJ 7MY sing 3 n y 
C6 N1 7MY doub 4 n y 
C6 C5 7MY sing 5 n y 
N1 C2 7MY sing 6 n y 
CAH CAY 7MY sing 7 n y 
CAJ CBB 7MY doub 8 n y 
C5 CBI 7MY sing 9 n n 
C5 C4 7MY doub 10 n y 
CBI CAA 7MY sing 11 n n 
CBI CAW 7MY sing 12 n n 
C2 NAV 7MY sing 13 n n 
C2 N3 7MY doub 14 n y 
NAV CAZ 7MY sing 15 n n 
CAZ CAI 7MY doub 16 n y 
CAZ CAL 7MY sing 17 n y 
C4 N3 7MY sing 18 n y 
C4 NBH 7MY sing 19 n n 
CAI CAE 7MY sing 20 n y 
CAW NBH 7MY sing 21 n n 
CAW OAC 7MY doub 22 n n 
CAL CAX 7MY doub 23 n y 
CAY OAD 7MY sing 24 n n 
CAY CBC 7MY doub 25 n y 
CBB CBC 7MY sing 26 n y 
CBB CBF 7MY sing 27 n n 
NBH CBF 7MY sing 28 n n 
CAE CAG 7MY doub 29 n y 
CAX CAG 7MY sing 30 n y 
CAX CAS 7MY sing 31 n n 
CBC CAO 7MY sing 32 n n 
CAS NBG 7MY sing 33 n n 
CBF CAP 7MY sing 34 n n 
CAP CAO 7MY sing 35 n n 
NBG CAR 7MY sing 36 n n 
NBG CAQ 7MY sing 37 n n 
CAR CAN 7MY sing 38 n n 
CAQ CAM 7MY sing 39 n n 
CAN CAM 7MY sing 40 n n 
C6 H1 7MY sing 41 n n 
CAQ H2 7MY sing 42 n n 
CAQ H3 7MY sing 43 n n 
CAM H4 7MY sing 44 n n 
CAM H5 7MY sing 45 n n 
CAN H6 7MY sing 46 n n 
CAN H7 7MY sing 47 n n 
CAR H8 7MY sing 48 n n 
CAR H9 7MY sing 49 n n 
CAS H11 7MY sing 50 n n 
CAS H12 7MY sing 51 n n 
CAL H13 7MY sing 52 n n 
CAG H14 7MY sing 53 n n 
CAE H15 7MY sing 54 n n 
CAI H16 7MY sing 55 n n 
NAV H17 7MY sing 56 n n 
CAA H18 7MY sing 57 n n 
CAA H19 7MY sing 58 n n 
CAA H20 7MY sing 59 n n 
CAB H21 7MY sing 60 n n 
CAB H22 7MY sing 61 n n 
CAB H23 7MY sing 62 n n 
CBF H24 7MY sing 63 n n 
CAP H25 7MY sing 64 n n 
CAP H26 7MY sing 65 n n 
CAO H27 7MY sing 66 n n 
CAO H28 7MY sing 67 n n 
CAJ H29 7MY sing 68 n n 
CAF H30 7MY sing 69 n n 
CAH H31 7MY sing 70 n n 
OAD H32 7MY sing 71 n n 
#
_atom_sites.entry_id                     5TX3 
_atom_sites.fract_transf_matrix[1][1]    0.015475 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005896 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012711 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013553 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 7MY A 1 1000 1000 7MY DRG . 
D 2 7MY B 1 1001 1001 7MY DRG . 
E 3 HOH A 1 1101 47 HOH HOH . 
E 3 HOH A 2 1102 33 HOH HOH . 
E 3 HOH A 3 1103 19 HOH HOH . 
E 3 HOH A 4 1104 94 HOH HOH . 
E 3 HOH A 5 1105 73 HOH HOH . 
E 3 HOH A 6 1106 91 HOH HOH . 
E 3 HOH A 7 1107 92 HOH HOH . 
E 3 HOH A 8 1108 30 HOH HOH . 
E 3 HOH A 9 1109 4 HOH HOH . 
E 3 HOH A 10 1110 85 HOH HOH . 
E 3 HOH A 11 1111 83 HOH HOH . 
E 3 HOH A 12 1112 51 HOH HOH . 
E 3 HOH A 13 1113 5 HOH HOH . 
E 3 HOH A 14 1114 84 HOH HOH . 
E 3 HOH A 15 1115 86 HOH HOH . 
E 3 HOH A 16 1116 97 HOH HOH . 
E 3 HOH A 17 1117 89 HOH HOH . 
E 3 HOH A 18 1118 95 HOH HOH . 
E 3 HOH A 19 1119 88 HOH HOH . 
E 3 HOH A 20 1120 3 HOH HOH . 
E 3 HOH A 21 1121 72 HOH HOH . 
E 3 HOH A 22 1122 90 HOH HOH . 
E 3 HOH A 23 1123 68 HOH HOH . 
E 3 HOH A 24 1124 18 HOH HOH . 
E 3 HOH A 25 1125 79 HOH HOH . 
E 3 HOH A 26 1126 2 HOH HOH . 
E 3 HOH A 27 1127 96 HOH HOH . 
E 3 HOH A 28 1128 71 HOH HOH . 
E 3 HOH A 29 1129 70 HOH HOH . 
E 3 HOH A 30 1130 78 HOH HOH . 
E 3 HOH A 31 1131 69 HOH HOH . 
E 3 HOH A 32 1132 66 HOH HOH . 
F 3 HOH B 1 1101 9 HOH HOH . 
F 3 HOH B 2 1102 1 HOH HOH . 
F 3 HOH B 3 1103 87 HOH HOH . 
F 3 HOH B 4 1104 74 HOH HOH . 
F 3 HOH B 5 1105 6 HOH HOH . 
F 3 HOH B 6 1106 93 HOH HOH . 
F 3 HOH B 7 1107 80 HOH HOH . 
F 3 HOH B 8 1108 14 HOH HOH . 
F 3 HOH B 9 1109 53 HOH HOH . 
F 3 HOH B 10 1110 15 HOH HOH . 
F 3 HOH B 11 1111 75 HOH HOH . 
F 3 HOH B 12 1112 10 HOH HOH . 
F 3 HOH B 13 1113 16 HOH HOH . 
F 3 HOH B 14 1114 54 HOH HOH . 
F 3 HOH B 15 1115 76 HOH HOH . 
F 3 HOH B 16 1116 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 7MY . . . D 2 9.488 -6.369 48.741 1 54.87 ? C4 7MY 1001 B 1 
HETATM 2 C C5 7MY . . . D 2 8.513 -5.994 49.517 1 38.55 ? C5 7MY 1001 B 1 
HETATM 3 C C6 7MY . . . D 2 8.359 -4.634 50.02 1 39.51 ? C6 7MY 1001 B 1 
HETATM 4 N N1 7MY . . . D 2 9.305 -3.724 49.669 1 55.93 ? N1 7MY 1001 B 1 
HETATM 5 N N3 7MY . . . D 2 10.462 -5.4 48.395 1 37.97 ? N3 7MY 1001 B 1 
HETATM 6 C CAQ 7MY . . . D 2 15.181 0.439 44.743 1 117.59 ? CAQ 7MY 1001 B 1 
HETATM 7 C CAM 7MY . . . D 2 16.26 -0.19 43.847 1 122.97 ? CAM 7MY 1001 B 1 
HETATM 8 C CAN 7MY . . . D 2 15.524 -1.357 43.222 1 124.04 ? CAN 7MY 1001 B 1 
HETATM 9 C CAR 7MY . . . D 2 14.372 -1.618 44.189 1 121.74 ? CAR 7MY 1001 B 1 
HETATM 10 N NBG 7MY . . . D 2 14.545 -0.72 45.256 1 119.34 ? NBG 7MY 1001 B 1 
HETATM 11 C CAS 7MY . . . D 2 15.396 -1.343 46.238 1 118.83 ? CAS 7MY 1001 B 1 
HETATM 12 C CAX 7MY . . . D 2 14.653 -2.548 46.872 1 67.09 ? CAX 7MY 1001 B 1 
HETATM 13 C CAL 7MY . . . D 2 13.387 -2.359 47.399 1 64 ? CAL 7MY 1001 B 1 
HETATM 14 C CAG 7MY . . . D 2 15.238 -3.803 46.932 1 67.78 ? CAG 7MY 1001 B 1 
HETATM 15 C CAE 7MY . . . D 2 14.539 -4.869 47.52 1 68.13 ? CAE 7MY 1001 B 1 
HETATM 16 C CAI 7MY . . . D 2 13.264 -4.677 48.04 1 60.21 ? CAI 7MY 1001 B 1 
HETATM 17 C CAZ 7MY . . . D 2 12.685 -3.417 47.979 1 54.64 ? CAZ 7MY 1001 B 1 
HETATM 18 N NAV 7MY . . . D 2 11.374 -3.113 48.5 1 50.86 ? NAV 7MY 1001 B 1 
HETATM 19 C C2 7MY . . . D 2 10.385 -4.087 48.853 1 38.9 ? C2 7MY 1001 B 1 
HETATM 20 C CBI 7MY . . . D 2 7.495 -7.109 49.838 1 38.68 ? CBI 7MY 1001 B 1 
HETATM 21 C CAA 7MY . . . D 2 6.012 -6.878 49.396 1 104.48 ? CAA 7MY 1001 B 1 
HETATM 22 C CAB 7MY . . . D 2 7.202 -7.568 51.253 1 55 ? CAB 7MY 1001 B 1 
HETATM 23 C CAW 7MY . . . D 2 8.195 -8.205 49.062 1 47.19 ? CAW 7MY 1001 B 1 
HETATM 24 O OAC 7MY . . . D 2 7.738 -9.491 49.001 1 52.86 ? OAC 7MY 1001 B 1 
HETATM 25 N NBH 7MY . . . D 2 9.339 -7.732 48.423 1 50.75 ? NBH 7MY 1001 B 1 
HETATM 26 C CBF 7MY . . . D 2 10.2 -8.536 47.635 1 48.09 ? CBF 7MY 1001 B 1 
HETATM 27 C CAP 7MY . . . D 2 10.612 -7.707 46.556 1 52.33 ? CAP 7MY 1001 B 1 
HETATM 28 C CAO 7MY . . . D 2 12.148 -7.795 46.45 1 53.56 ? CAO 7MY 1001 B 1 
HETATM 29 C CBC 7MY . . . D 2 12.439 -8.29 47.875 1 58.04 ? CBC 7MY 1001 B 1 
HETATM 30 C CBB 7MY . . . D 2 11.339 -8.692 48.478 1 59.4 ? CBB 7MY 1001 B 1 
HETATM 31 C CAJ 7MY . . . D 2 11.407 -9.22 49.859 1 53.51 ? CAJ 7MY 1001 B 1 
HETATM 32 C CAF 7MY . . . D 2 12.632 -9.295 50.513 1 49.93 ? CAF 7MY 1001 B 1 
HETATM 33 C CAH 7MY . . . D 2 13.825 -8.859 49.849 1 52.81 ? CAH 7MY 1001 B 1 
HETATM 34 C CAY 7MY . . . D 2 13.748 -8.369 48.554 1 54.34 ? CAY 7MY 1001 B 1 
HETATM 35 O OAD 7MY . . . D 2 14.931 -7.95 47.923 1 60.78 ? OAD 7MY 1001 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           35 
#