data_5TXV # _model_server_result.job_id GWp1JLgLjY6BfCS9c4LGNw _model_server_result.datetime_utc '2024-10-12 21:19:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5txv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":501}' # _entry.id 5TXV # _exptl.entry_id 5TXV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.56 _cell.angle_gamma 90 _cell.entry_id 5TXV _cell.length_a 86.497 _cell.length_b 420.86 _cell.length_c 176.418 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TXV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 PISA hexameric 6 author_and_software_defined_assembly 3 PISA hexameric 6 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,Y,Z,AA,BA,CA,DA 1 1 G,H,I,J,K,L,EA,FA,GA,HA,IA,JA 2 1 M,N,O,P,Q,R,KA,LA,MA,NA,OA,PA 3 1 S,T,U,V,W,X,QA,RA,SA,TA,UA,VA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N ? 2 MA N N ? 2 NA N N ? 2 OA N N ? 2 PA N N ? 2 QA N N ? 2 RA N N ? 2 SA N N ? 2 TA N N ? 2 UA N N ? 2 VA N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5TXV _atom_sites.fract_transf_matrix[1][1] 0.011561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001741 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002376 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Y 2 ADP A 1 501 450 ADP ADP . Z 2 ADP B 1 501 450 ADP ADP . AA 2 ADP C 1 501 450 ADP ADP . BA 2 ADP D 1 501 450 ADP ADP . CA 2 ADP E 1 501 450 ADP ADP . DA 2 ADP F 1 501 450 ADP ADP . EA 2 ADP G 1 501 450 ADP ADP . FA 2 ADP H 1 501 450 ADP ADP . GA 2 ADP I 1 501 450 ADP ADP . HA 2 ADP J 1 501 450 ADP ADP . IA 2 ADP K 1 501 450 ADP ADP . JA 2 ADP L 1 501 450 ADP ADP . KA 2 ADP M 1 501 450 ADP ADP . LA 2 ADP N 1 501 450 ADP ADP . MA 2 ADP O 1 501 450 ADP ADP . NA 2 ADP P 1 501 450 ADP ADP . OA 2 ADP Q 1 501 450 ADP ADP . PA 2 ADP R 1 501 450 ADP ADP . QA 2 ADP S 1 501 450 ADP ADP . RA 2 ADP T 1 501 450 ADP ADP . SA 2 ADP U 1 501 450 ADP ADP . TA 2 ADP V 1 501 450 ADP ADP . UA 2 ADP W 1 501 450 ADP ADP . VA 2 ADP X 1 501 450 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . DA 2 18.321 -108.385 -34.948 1 314.34 ? PB ADP 501 F 1 HETATM 2 O O1B ADP . . . DA 2 18.87 -107.943 -36.277 1 314.59 ? O1B ADP 501 F 1 HETATM 3 O O2B ADP . . . DA 2 18.691 -107.489 -33.791 1 312.83 ? O2B ADP 501 F 1 HETATM 4 O O3B ADP . . . DA 2 16.863 -108.771 -35.014 1 315.92 ? O3B ADP 501 F 1 HETATM 5 P PA ADP . . . DA 2 20.698 -109.852 -34.523 1 314.85 ? PA ADP 501 F 1 HETATM 6 O O1A ADP . . . DA 2 21.33 -109.038 -35.627 1 314.68 ? O1A ADP 501 F 1 HETATM 7 O O2A ADP . . . DA 2 21.104 -109.599 -33.093 1 313.98 ? O2A ADP 501 F 1 HETATM 8 O O3A ADP . . . DA 2 19.091 -109.77 -34.647 1 315.36 ? O3A ADP 501 F 1 HETATM 9 O O5' ADP . . . DA 2 21.01 -111.399 -34.816 1 317.07 ? O5' ADP 501 F 1 HETATM 10 C C5' ADP . . . DA 2 21.275 -111.775 -36.158 1 318.75 ? C5' ADP 501 F 1 HETATM 11 C C4' ADP . . . DA 2 22.174 -112.995 -36.246 1 320.89 ? C4' ADP 501 F 1 HETATM 12 O O4' ADP . . . DA 2 21.99 -113.534 -37.554 1 323.52 ? O4' ADP 501 F 1 HETATM 13 C C3' ADP . . . DA 2 23.628 -112.584 -36.118 1 320.47 ? C3' ADP 501 F 1 HETATM 14 O O3' ADP . . . DA 2 24.345 -113.54 -35.324 1 321.56 ? O3' ADP 501 F 1 HETATM 15 C C2' ADP . . . DA 2 24.142 -112.528 -37.548 1 322.63 ? C2' ADP 501 F 1 HETATM 16 O O2' ADP . . . DA 2 25.379 -113.239 -37.668 1 324.92 ? O2' ADP 501 F 1 HETATM 17 C C1' ADP . . . DA 2 23.073 -113.177 -38.418 1 324.6 ? C1' ADP 501 F 1 HETATM 18 N N9 ADP . . . DA 2 22.541 -112.254 -39.464 1 324.84 ? N9 ADP 501 F 1 HETATM 19 C C8 ADP . . . DA 2 21.271 -111.804 -39.502 1 323.85 ? C8 ADP 501 F 1 HETATM 20 N N7 ADP . . . DA 2 21.057 -110.992 -40.565 1 324.86 ? N7 ADP 501 F 1 HETATM 21 C C5 ADP . . . DA 2 22.211 -110.916 -41.247 1 326.79 ? C5 ADP 501 F 1 HETATM 22 C C6 ADP . . . DA 2 22.665 -110.223 -42.472 1 329.49 ? C6 ADP 501 F 1 HETATM 23 N N6 ADP . . . DA 2 21.813 -109.442 -43.178 1 330.13 ? N6 ADP 501 F 1 HETATM 24 N N1 ADP . . . DA 2 23.948 -110.398 -42.853 1 331.92 ? N1 ADP 501 F 1 HETATM 25 C C2 ADP . . . DA 2 24.792 -111.175 -42.148 1 331.66 ? C2 ADP 501 F 1 HETATM 26 N N3 ADP . . . DA 2 24.445 -111.833 -41.026 1 329.11 ? N3 ADP 501 F 1 HETATM 27 C C4 ADP . . . DA 2 23.187 -111.751 -40.526 1 326.76 ? C4 ADP 501 F 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #