data_5TXV
#
_model_server_result.job_id            tl0pbVJKp2xUrFOcMKxYcA 
_model_server_result.datetime_utc      '2024-10-12 21:23:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5txv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"LA","auth_seq_id":501}' 
#
_entry.id    5TXV 
#
_exptl.entry_id    5TXV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.56 
_cell.angle_gamma         90 
_cell.entry_id            5TXV 
_cell.length_a            86.497 
_cell.length_b            420.86 
_cell.length_c            176.418 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TXV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
PISA hexameric 6 author_and_software_defined_assembly 3 
PISA hexameric 6 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,Y,Z,AA,BA,CA,DA 1 1 
G,H,I,J,K,L,EA,FA,GA,HA,IA,JA 2 1 
M,N,O,P,Q,R,KA,LA,MA,NA,OA,PA 3 1 
S,T,U,V,W,X,QA,RA,SA,TA,UA,VA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 IA N N 
? 2 JA N N 
? 2 KA N N 
? 2 LA N N 
? 2 MA N N 
? 2 NA N N 
? 2 OA N N 
? 2 PA N N 
? 2 QA N N 
? 2 RA N N 
? 2 SA N N 
? 2 TA N N 
? 2 UA N N 
? 2 VA N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     5TXV 
_atom_sites.fract_transf_matrix[1][1]    0.011561 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001741 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002376 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005732 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Y 2 ADP A 1 501 450 ADP ADP . 
Z 2 ADP B 1 501 450 ADP ADP . 
AA 2 ADP C 1 501 450 ADP ADP . 
BA 2 ADP D 1 501 450 ADP ADP . 
CA 2 ADP E 1 501 450 ADP ADP . 
DA 2 ADP F 1 501 450 ADP ADP . 
EA 2 ADP G 1 501 450 ADP ADP . 
FA 2 ADP H 1 501 450 ADP ADP . 
GA 2 ADP I 1 501 450 ADP ADP . 
HA 2 ADP J 1 501 450 ADP ADP . 
IA 2 ADP K 1 501 450 ADP ADP . 
JA 2 ADP L 1 501 450 ADP ADP . 
KA 2 ADP M 1 501 450 ADP ADP . 
LA 2 ADP N 1 501 450 ADP ADP . 
MA 2 ADP O 1 501 450 ADP ADP . 
NA 2 ADP P 1 501 450 ADP ADP . 
OA 2 ADP Q 1 501 450 ADP ADP . 
PA 2 ADP R 1 501 450 ADP ADP . 
QA 2 ADP S 1 501 450 ADP ADP . 
RA 2 ADP T 1 501 450 ADP ADP . 
SA 2 ADP U 1 501 450 ADP ADP . 
TA 2 ADP V 1 501 450 ADP ADP . 
UA 2 ADP W 1 501 450 ADP ADP . 
VA 2 ADP X 1 501 450 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . LA 2 -13.317 -113.568 -79.892 1 451.51 ? PB ADP 501 N 1 
HETATM 2 O O1B ADP . . . LA 2 -13.833 -114.703 -80.743 1 448.78 ? O1B ADP 501 N 1 
HETATM 3 O O2B ADP . . . LA 2 -11.816 -113.502 -79.778 1 449.31 ? O2B ADP 501 N 1 
HETATM 4 O O3B ADP . . . LA 2 -13.938 -112.228 -80.194 1 454.72 ? O3B ADP 501 N 1 
HETATM 5 P PA ADP . . . LA 2 -15.381 -114.059 -78.021 1 457.49 ? PA ADP 501 N 1 
HETATM 6 O O1A ADP . . . LA 2 -16.141 -112.926 -78.67 1 459.88 ? O1A ADP 501 N 1 
HETATM 7 O O2A ADP . . . LA 2 -15.835 -115.48 -78.261 1 455.45 ? O2A ADP 501 N 1 
HETATM 8 O O3A ADP . . . LA 2 -13.816 -113.926 -78.398 1 454.2 ? O3A ADP 501 N 1 
HETATM 9 O O5' ADP . . . LA 2 -15.406 -113.812 -76.431 1 460.69 ? O5' ADP 501 N 1 
HETATM 10 C C5' ADP . . . LA 2 -15.62 -112.489 -75.959 1 464.42 ? C5' ADP 501 N 1 
HETATM 11 C C4' ADP . . . LA 2 -16.255 -112.456 -74.578 1 468.01 ? C4' ADP 501 N 1 
HETATM 12 O O4' ADP . . . LA 2 -15.93 -111.195 -73.994 1 470.9 ? O4' ADP 501 N 1 
HETATM 13 C C3' ADP . . . LA 2 -17.765 -112.525 -74.696 1 470.6 ? C3' ADP 501 N 1 
HETATM 14 O O3' ADP . . . LA 2 -18.308 -113.322 -73.638 1 472.1 ? O3' ADP 501 N 1 
HETATM 15 C C2' ADP . . . LA 2 -18.229 -111.086 -74.577 1 474.32 ? C2' ADP 501 N 1 
HETATM 16 O O2' ADP . . . LA 2 -19.289 -111.002 -73.623 1 478.19 ? O2' ADP 501 N 1 
HETATM 17 C C1' ADP . . . LA 2 -17.027 -110.283 -74.099 1 474.5 ? C1' ADP 501 N 1 
HETATM 18 N N9 ADP . . . LA 2 -16.649 -109.221 -75.076 1 474.29 ? N9 ADP 501 N 1 
HETATM 19 C C8 ADP . . . LA 2 -15.485 -109.181 -75.752 1 471.31 ? C8 ADP 501 N 1 
HETATM 20 N N7 ADP . . . LA 2 -15.41 -108.099 -76.565 1 472.1 ? N7 ADP 501 N 1 
HETATM 21 C C5 ADP . . . LA 2 -16.551 -107.406 -76.412 1 475.55 ? C5 ADP 501 N 1 
HETATM 22 C C6 ADP . . . LA 2 -17.116 -106.158 -76.977 1 478 ? C6 ADP 501 N 1 
HETATM 23 N N6 ADP . . . LA 2 -16.427 -105.424 -77.885 1 476.99 ? N6 ADP 501 N 1 
HETATM 24 N N1 ADP . . . LA 2 -18.342 -105.777 -76.555 1 481.34 ? N1 ADP 501 N 1 
HETATM 25 C C2 ADP . . . LA 2 -19.032 -106.501 -75.653 1 482.58 ? C2 ADP 501 N 1 
HETATM 26 N N3 ADP . . . LA 2 -18.579 -107.642 -75.1 1 480.6 ? N3 ADP 501 N 1 
HETATM 27 C C4 ADP . . . LA 2 -17.363 -108.144 -75.428 1 477.03 ? C4 ADP 501 N 1 
#
_model_server_stats.io_time_ms              117 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    70 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#