data_5TYL # _model_server_result.job_id x2HFyWtqUoFxCtb6DPoz_A _model_server_result.datetime_utc '2024-11-22 11:25:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5TYL # _exptl.entry_id 5TYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 171.988 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'naphthalen-2-ylboronic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TYL _cell.length_a 48.767 _cell.length_b 101.399 _cell.length_c 223.537 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 225 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 218 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id B02 _struct_conn.ptnr2_label_comp_id 7N7 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 7N7 _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.45 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H9 B O2' _chem_comp.formula_weight 171.988 _chem_comp.id 7N7 _chem_comp.mon_nstd_flag . _chem_comp.name 'naphthalen-2-ylboronic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 B02 7N7 sing 1 n n B02 O03 7N7 sing 2 n n B02 C05 7N7 sing 3 n n C05 C14 7N7 doub 4 n y C05 C06 7N7 sing 5 n y C14 C13 7N7 sing 6 n y C06 C07 7N7 doub 7 n y C13 C12 7N7 doub 8 n y C07 C12 7N7 sing 9 n y C07 C08 7N7 sing 10 n y C12 C11 7N7 sing 11 n y C08 C09 7N7 doub 12 n y C11 C10 7N7 doub 13 n y C09 C10 7N7 sing 14 n y C13 H1 7N7 sing 15 n n O01 H2 7N7 sing 16 n n O03 H3 7N7 sing 17 n n C06 H4 7N7 sing 18 n n C08 H5 7N7 sing 19 n n C09 H6 7N7 sing 20 n n C10 H7 7N7 sing 21 n n C11 H8 7N7 sing 22 n n C14 H9 7N7 sing 23 n n # _atom_sites.entry_id 5TYL _atom_sites.fract_transf_matrix[1][1] 0.020506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7N7 A 1 601 601 7N7 LIG . C 3 HOH A 1 701 107 HOH HOH . C 3 HOH A 2 702 203 HOH HOH . C 3 HOH A 3 703 120 HOH HOH . C 3 HOH A 4 704 171 HOH HOH . C 3 HOH A 5 705 86 HOH HOH . C 3 HOH A 6 706 13 HOH HOH . C 3 HOH A 7 707 47 HOH HOH . C 3 HOH A 8 708 167 HOH HOH . C 3 HOH A 9 709 134 HOH HOH . C 3 HOH A 10 710 68 HOH HOH . C 3 HOH A 11 711 29 HOH HOH . C 3 HOH A 12 712 22 HOH HOH . C 3 HOH A 13 713 23 HOH HOH . C 3 HOH A 14 714 81 HOH HOH . C 3 HOH A 15 715 5 HOH HOH . C 3 HOH A 16 716 129 HOH HOH . C 3 HOH A 17 717 168 HOH HOH . C 3 HOH A 18 718 26 HOH HOH . C 3 HOH A 19 719 77 HOH HOH . C 3 HOH A 20 720 49 HOH HOH . C 3 HOH A 21 721 85 HOH HOH . C 3 HOH A 22 722 58 HOH HOH . C 3 HOH A 23 723 66 HOH HOH . C 3 HOH A 24 724 74 HOH HOH . C 3 HOH A 25 725 144 HOH HOH . C 3 HOH A 26 726 188 HOH HOH . C 3 HOH A 27 727 126 HOH HOH . C 3 HOH A 28 728 54 HOH HOH . C 3 HOH A 29 729 88 HOH HOH . C 3 HOH A 30 730 157 HOH HOH . C 3 HOH A 31 731 61 HOH HOH . C 3 HOH A 32 732 138 HOH HOH . C 3 HOH A 33 733 69 HOH HOH . C 3 HOH A 34 734 92 HOH HOH . C 3 HOH A 35 735 10 HOH HOH . C 3 HOH A 36 736 72 HOH HOH . C 3 HOH A 37 737 12 HOH HOH . C 3 HOH A 38 738 18 HOH HOH . C 3 HOH A 39 739 16 HOH HOH . C 3 HOH A 40 740 87 HOH HOH . C 3 HOH A 41 741 19 HOH HOH . C 3 HOH A 42 742 179 HOH HOH . C 3 HOH A 43 743 114 HOH HOH . C 3 HOH A 44 744 113 HOH HOH . C 3 HOH A 45 745 150 HOH HOH . C 3 HOH A 46 746 160 HOH HOH . C 3 HOH A 47 747 165 HOH HOH . C 3 HOH A 48 748 35 HOH HOH . C 3 HOH A 49 749 82 HOH HOH . C 3 HOH A 50 750 41 HOH HOH . C 3 HOH A 51 751 115 HOH HOH . C 3 HOH A 52 752 36 HOH HOH . C 3 HOH A 53 753 59 HOH HOH . C 3 HOH A 54 754 55 HOH HOH . C 3 HOH A 55 755 32 HOH HOH . C 3 HOH A 56 756 190 HOH HOH . C 3 HOH A 57 757 67 HOH HOH . C 3 HOH A 58 758 162 HOH HOH . C 3 HOH A 59 759 20 HOH HOH . C 3 HOH A 60 760 65 HOH HOH . C 3 HOH A 61 761 52 HOH HOH . C 3 HOH A 62 762 132 HOH HOH . C 3 HOH A 63 763 25 HOH HOH . C 3 HOH A 64 764 40 HOH HOH . C 3 HOH A 65 765 149 HOH HOH . C 3 HOH A 66 766 154 HOH HOH . C 3 HOH A 67 767 28 HOH HOH . C 3 HOH A 68 768 24 HOH HOH . C 3 HOH A 69 769 130 HOH HOH . C 3 HOH A 70 770 14 HOH HOH . C 3 HOH A 71 771 48 HOH HOH . C 3 HOH A 72 772 27 HOH HOH . C 3 HOH A 73 773 137 HOH HOH . C 3 HOH A 74 774 185 HOH HOH . C 3 HOH A 75 775 131 HOH HOH . C 3 HOH A 76 776 140 HOH HOH . C 3 HOH A 77 777 2 HOH HOH . C 3 HOH A 78 778 117 HOH HOH . C 3 HOH A 79 779 200 HOH HOH . C 3 HOH A 80 780 4 HOH HOH . C 3 HOH A 81 781 182 HOH HOH . C 3 HOH A 82 782 39 HOH HOH . C 3 HOH A 83 783 99 HOH HOH . C 3 HOH A 84 784 30 HOH HOH . C 3 HOH A 85 785 6 HOH HOH . C 3 HOH A 86 786 103 HOH HOH . C 3 HOH A 87 787 44 HOH HOH . C 3 HOH A 88 788 21 HOH HOH . C 3 HOH A 89 789 17 HOH HOH . C 3 HOH A 90 790 80 HOH HOH . C 3 HOH A 91 791 8 HOH HOH . C 3 HOH A 92 792 177 HOH HOH . C 3 HOH A 93 793 60 HOH HOH . C 3 HOH A 94 794 142 HOH HOH . C 3 HOH A 95 795 94 HOH HOH . C 3 HOH A 96 796 133 HOH HOH . C 3 HOH A 97 797 161 HOH HOH . C 3 HOH A 98 798 193 HOH HOH . C 3 HOH A 99 799 93 HOH HOH . C 3 HOH A 100 800 43 HOH HOH . C 3 HOH A 101 801 192 HOH HOH . C 3 HOH A 102 802 37 HOH HOH . C 3 HOH A 103 803 7 HOH HOH . C 3 HOH A 104 804 180 HOH HOH . C 3 HOH A 105 805 76 HOH HOH . C 3 HOH A 106 806 100 HOH HOH . C 3 HOH A 107 807 62 HOH HOH . C 3 HOH A 108 808 153 HOH HOH . C 3 HOH A 109 809 33 HOH HOH . C 3 HOH A 110 810 96 HOH HOH . C 3 HOH A 111 811 121 HOH HOH . C 3 HOH A 112 812 174 HOH HOH . C 3 HOH A 113 813 11 HOH HOH . C 3 HOH A 114 814 78 HOH HOH . C 3 HOH A 115 815 166 HOH HOH . C 3 HOH A 116 816 9 HOH HOH . C 3 HOH A 117 817 1 HOH HOH . C 3 HOH A 118 818 195 HOH HOH . C 3 HOH A 119 819 122 HOH HOH . C 3 HOH A 120 820 45 HOH HOH . C 3 HOH A 121 821 70 HOH HOH . C 3 HOH A 122 822 71 HOH HOH . C 3 HOH A 123 823 56 HOH HOH . C 3 HOH A 124 824 42 HOH HOH . C 3 HOH A 125 825 151 HOH HOH . C 3 HOH A 126 826 141 HOH HOH . C 3 HOH A 127 827 31 HOH HOH . C 3 HOH A 128 828 98 HOH HOH . C 3 HOH A 129 829 125 HOH HOH . C 3 HOH A 130 830 127 HOH HOH . C 3 HOH A 131 831 91 HOH HOH . C 3 HOH A 132 832 109 HOH HOH . C 3 HOH A 133 833 124 HOH HOH . C 3 HOH A 134 834 89 HOH HOH . C 3 HOH A 135 835 175 HOH HOH . C 3 HOH A 136 836 163 HOH HOH . C 3 HOH A 137 837 15 HOH HOH . C 3 HOH A 138 838 90 HOH HOH . C 3 HOH A 139 839 46 HOH HOH . C 3 HOH A 140 840 97 HOH HOH . C 3 HOH A 141 841 105 HOH HOH . C 3 HOH A 142 842 148 HOH HOH . C 3 HOH A 143 843 104 HOH HOH . C 3 HOH A 144 844 75 HOH HOH . C 3 HOH A 145 845 38 HOH HOH . C 3 HOH A 146 846 191 HOH HOH . C 3 HOH A 147 847 3 HOH HOH . C 3 HOH A 148 848 64 HOH HOH . C 3 HOH A 149 849 123 HOH HOH . C 3 HOH A 150 850 164 HOH HOH . C 3 HOH A 151 851 135 HOH HOH . C 3 HOH A 152 852 53 HOH HOH . C 3 HOH A 153 853 119 HOH HOH . C 3 HOH A 154 854 194 HOH HOH . C 3 HOH A 155 855 106 HOH HOH . C 3 HOH A 156 856 181 HOH HOH . C 3 HOH A 157 857 197 HOH HOH . C 3 HOH A 158 858 34 HOH HOH . C 3 HOH A 159 859 159 HOH HOH . C 3 HOH A 160 860 79 HOH HOH . C 3 HOH A 161 861 196 HOH HOH . C 3 HOH A 162 862 101 HOH HOH . C 3 HOH A 163 863 57 HOH HOH . C 3 HOH A 164 864 155 HOH HOH . C 3 HOH A 165 865 83 HOH HOH . C 3 HOH A 166 866 152 HOH HOH . C 3 HOH A 167 867 172 HOH HOH . C 3 HOH A 168 868 173 HOH HOH . C 3 HOH A 169 869 95 HOH HOH . C 3 HOH A 170 870 145 HOH HOH . C 3 HOH A 171 871 201 HOH HOH . C 3 HOH A 172 872 116 HOH HOH . C 3 HOH A 173 873 73 HOH HOH . C 3 HOH A 174 874 202 HOH HOH . C 3 HOH A 175 875 110 HOH HOH . C 3 HOH A 176 876 84 HOH HOH . C 3 HOH A 177 877 158 HOH HOH . C 3 HOH A 178 878 128 HOH HOH . C 3 HOH A 179 879 184 HOH HOH . C 3 HOH A 180 880 156 HOH HOH . C 3 HOH A 181 881 111 HOH HOH . C 3 HOH A 182 882 178 HOH HOH . C 3 HOH A 183 883 146 HOH HOH . C 3 HOH A 184 884 118 HOH HOH . C 3 HOH A 185 885 102 HOH HOH . C 3 HOH A 186 886 176 HOH HOH . C 3 HOH A 187 887 198 HOH HOH . C 3 HOH A 188 888 169 HOH HOH . C 3 HOH A 189 889 183 HOH HOH . C 3 HOH A 190 890 186 HOH HOH . C 3 HOH A 191 891 199 HOH HOH . C 3 HOH A 192 892 187 HOH HOH . C 3 HOH A 193 893 108 HOH HOH . C 3 HOH A 194 894 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 7N7 . . . B 2 -16.017 -7.536 -20.287 0.82 29.09 ? C13 7N7 601 A 1 HETATM 2 O O01 7N7 . . . B 2 -17.626 -8.173 -24.234 0.82 31.4 ? O01 7N7 601 A 1 HETATM 3 B B02 7N7 . . . B 2 -18.324 -9.104 -23.027 0.82 26.65 ? B02 7N7 601 A 1 HETATM 4 O O03 7N7 . . . B 2 -19.814 -8.388 -22.744 0.82 20.36 ? O03 7N7 601 A 1 HETATM 5 C C05 7N7 . . . B 2 -17.43 -8.96 -21.618 0.82 28.73 ? C05 7N7 601 A 1 HETATM 6 C C06 7N7 . . . B 2 -17.33 -10.006 -20.683 0.82 20.68 ? C06 7N7 601 A 1 HETATM 7 C C07 7N7 . . . B 2 -16.532 -9.776 -19.502 0.82 25.46 ? C07 7N7 601 A 1 HETATM 8 C C08 7N7 . . . B 2 -16.38 -10.782 -18.533 0.82 28.06 ? C08 7N7 601 A 1 HETATM 9 C C09 7N7 . . . B 2 -15.606 -10.55 -17.402 0.82 30.44 ? C09 7N7 601 A 1 HETATM 10 C C10 7N7 . . . B 2 -14.964 -9.33 -17.21 0.82 26.93 ? C10 7N7 601 A 1 HETATM 11 C C11 7N7 . . . B 2 -15.102 -8.352 -18.167 0.82 32.29 ? C11 7N7 601 A 1 HETATM 12 C C12 7N7 . . . B 2 -15.889 -8.584 -19.318 0.82 23.55 ? C12 7N7 601 A 1 HETATM 13 C C14 7N7 . . . B 2 -16.783 -7.726 -21.431 0.82 25.84 ? C14 7N7 601 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 13 #