data_5TYQ
#
_model_server_result.job_id            lqQhXnxomme3iqgKVsNXuw 
_model_server_result.datetime_utc      '2024-11-28 20:45:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tyq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5TYQ 
#
_exptl.entry_id    5TYQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5TYQ 
_cell.length_a            66.692 
_cell.length_b            66.922 
_cell.length_c            68.849 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TYQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 118 A GLU 98 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc2 A OE2 GLU 118 A GLU 98 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc3 A OD1 ASP 226 A ASP 206 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? 
metalc ? metalc4 A OD2 ASP 226 A ASP 206 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc5 C MG MG . A MG 402 1_555 D O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc6 C MG MG . A MG 402 1_555 D O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     5TYQ 
_atom_sites.fract_transf_matrix[1][1]    0.014994 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014943 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014525 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAH A 1 401 1 SAH SAM . 
C 3 MG A 1 402 1 MG MG . 
D 4 HOH A 1 501 143 HOH HOH . 
D 4 HOH A 2 502 142 HOH HOH . 
D 4 HOH A 3 503 111 HOH HOH . 
D 4 HOH A 4 504 104 HOH HOH . 
D 4 HOH A 5 505 116 HOH HOH . 
D 4 HOH A 6 506 83 HOH HOH . 
D 4 HOH A 7 507 97 HOH HOH . 
D 4 HOH A 8 508 57 HOH HOH . 
D 4 HOH A 9 509 130 HOH HOH . 
D 4 HOH A 10 510 68 HOH HOH . 
D 4 HOH A 11 511 69 HOH HOH . 
D 4 HOH A 12 512 30 HOH HOH . 
D 4 HOH A 13 513 129 HOH HOH . 
D 4 HOH A 14 514 125 HOH HOH . 
D 4 HOH A 15 515 124 HOH HOH . 
D 4 HOH A 16 516 64 HOH HOH . 
D 4 HOH A 17 517 23 HOH HOH . 
D 4 HOH A 18 518 82 HOH HOH . 
D 4 HOH A 19 519 84 HOH HOH . 
D 4 HOH A 20 520 93 HOH HOH . 
D 4 HOH A 21 521 19 HOH HOH . 
D 4 HOH A 22 522 60 HOH HOH . 
D 4 HOH A 23 523 100 HOH HOH . 
D 4 HOH A 24 524 41 HOH HOH . 
D 4 HOH A 25 525 33 HOH HOH . 
D 4 HOH A 26 526 102 HOH HOH . 
D 4 HOH A 27 527 3 HOH HOH . 
D 4 HOH A 28 528 90 HOH HOH . 
D 4 HOH A 29 529 134 HOH HOH . 
D 4 HOH A 30 530 118 HOH HOH . 
D 4 HOH A 31 531 113 HOH HOH . 
D 4 HOH A 32 532 8 HOH HOH . 
D 4 HOH A 33 533 37 HOH HOH . 
D 4 HOH A 34 534 11 HOH HOH . 
D 4 HOH A 35 535 12 HOH HOH . 
D 4 HOH A 36 536 39 HOH HOH . 
D 4 HOH A 37 537 133 HOH HOH . 
D 4 HOH A 38 538 4 HOH HOH . 
D 4 HOH A 39 539 65 HOH HOH . 
D 4 HOH A 40 540 29 HOH HOH . 
D 4 HOH A 41 541 76 HOH HOH . 
D 4 HOH A 42 542 25 HOH HOH . 
D 4 HOH A 43 543 26 HOH HOH . 
D 4 HOH A 44 544 49 HOH HOH . 
D 4 HOH A 45 545 14 HOH HOH . 
D 4 HOH A 46 546 48 HOH HOH . 
D 4 HOH A 47 547 7 HOH HOH . 
D 4 HOH A 48 548 13 HOH HOH . 
D 4 HOH A 49 549 18 HOH HOH . 
D 4 HOH A 50 550 43 HOH HOH . 
D 4 HOH A 51 551 105 HOH HOH . 
D 4 HOH A 52 552 17 HOH HOH . 
D 4 HOH A 53 553 34 HOH HOH . 
D 4 HOH A 54 554 75 HOH HOH . 
D 4 HOH A 55 555 132 HOH HOH . 
D 4 HOH A 56 556 52 HOH HOH . 
D 4 HOH A 57 557 115 HOH HOH . 
D 4 HOH A 58 558 139 HOH HOH . 
D 4 HOH A 59 559 15 HOH HOH . 
D 4 HOH A 60 560 108 HOH HOH . 
D 4 HOH A 61 561 35 HOH HOH . 
D 4 HOH A 62 562 119 HOH HOH . 
D 4 HOH A 63 563 85 HOH HOH . 
D 4 HOH A 64 564 70 HOH HOH . 
D 4 HOH A 65 565 120 HOH HOH . 
D 4 HOH A 66 566 27 HOH HOH . 
D 4 HOH A 67 567 131 HOH HOH . 
D 4 HOH A 68 568 136 HOH HOH . 
D 4 HOH A 69 569 112 HOH HOH . 
D 4 HOH A 70 570 47 HOH HOH . 
D 4 HOH A 71 571 89 HOH HOH . 
D 4 HOH A 72 572 141 HOH HOH . 
D 4 HOH A 73 573 92 HOH HOH . 
D 4 HOH A 74 574 88 HOH HOH . 
D 4 HOH A 75 575 20 HOH HOH . 
D 4 HOH A 76 576 61 HOH HOH . 
D 4 HOH A 77 577 2 HOH HOH . 
D 4 HOH A 78 578 67 HOH HOH . 
D 4 HOH A 79 579 91 HOH HOH . 
D 4 HOH A 80 580 121 HOH HOH . 
D 4 HOH A 81 581 6 HOH HOH . 
D 4 HOH A 82 582 55 HOH HOH . 
D 4 HOH A 83 583 99 HOH HOH . 
D 4 HOH A 84 584 54 HOH HOH . 
D 4 HOH A 85 585 44 HOH HOH . 
D 4 HOH A 86 586 135 HOH HOH . 
D 4 HOH A 87 587 138 HOH HOH . 
D 4 HOH A 88 588 137 HOH HOH . 
D 4 HOH A 89 589 51 HOH HOH . 
D 4 HOH A 90 590 122 HOH HOH . 
D 4 HOH A 91 591 50 HOH HOH . 
D 4 HOH A 92 592 63 HOH HOH . 
D 4 HOH A 93 593 79 HOH HOH . 
D 4 HOH A 94 594 80 HOH HOH . 
D 4 HOH A 95 595 40 HOH HOH . 
D 4 HOH A 96 596 106 HOH HOH . 
D 4 HOH A 97 597 66 HOH HOH . 
D 4 HOH A 98 598 117 HOH HOH . 
D 4 HOH A 99 599 123 HOH HOH . 
D 4 HOH A 100 600 114 HOH HOH . 
D 4 HOH A 101 601 46 HOH HOH . 
D 4 HOH A 102 602 98 HOH HOH . 
D 4 HOH A 103 603 36 HOH HOH . 
D 4 HOH A 104 604 140 HOH HOH . 
D 4 HOH A 105 605 28 HOH HOH . 
D 4 HOH A 106 606 53 HOH HOH . 
D 4 HOH A 107 607 56 HOH HOH . 
D 4 HOH A 108 608 110 HOH HOH . 
D 4 HOH A 109 609 62 HOH HOH . 
D 4 HOH A 110 610 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . B 2 12.867 -13.698 -4.898 1 9.99 ? N SAH 401 A 1 
HETATM 2 C CA SAH . . . B 2 11.9 -14.503 -4.152 1 9.83 ? CA SAH 401 A 1 
HETATM 3 C CB SAH . . . B 2 11.513 -13.822 -2.834 1 13.09 ? CB SAH 401 A 1 
HETATM 4 C CG SAH . . . B 2 10.912 -12.42 -2.983 1 11.99 ? CG SAH 401 A 1 
HETATM 5 S SD SAH . . . B 2 10.123 -11.795 -1.471 1 17.7 ? SD SAH 401 A 1 
HETATM 6 C C SAH . . . B 2 10.664 -14.75 -5.003 1 7.54 ? C SAH 401 A 1 
HETATM 7 O O SAH . . . B 2 10.436 -14.083 -6.01 1 9.49 ? O SAH 401 A 1 
HETATM 8 O OXT SAH . . . B 2 9.859 -15.618 -4.696 1 12.83 ? OXT SAH 401 A 1 
HETATM 9 C C5' SAH . . . B 2 11.279 -10.481 -0.951 1 8.63 ? C5' SAH 401 A 1 
HETATM 10 C C4' SAH . . . B 2 12.584 -10.994 -0.337 1 7.32 ? C4' SAH 401 A 1 
HETATM 11 O O4' SAH . . . B 2 13.455 -9.931 0.016 1 15.68 ? O4' SAH 401 A 1 
HETATM 12 C C3' SAH . . . B 2 12.36 -11.807 0.94 1 10.24 ? C3' SAH 401 A 1 
HETATM 13 O O3' SAH . . . B 2 12.907 -13.101 0.776 1 10.55 ? O3' SAH 401 A 1 
HETATM 14 C C2' SAH . . . B 2 13.107 -11.049 2.021 1 11.77 ? C2' SAH 401 A 1 
HETATM 15 O O2' SAH . . . B 2 13.698 -11.901 2.981 1 7.61 ? O2' SAH 401 A 1 
HETATM 16 C C1' SAH . . . B 2 14.137 -10.28 1.202 1 10.05 ? C1' SAH 401 A 1 
HETATM 17 N N9 SAH . . . B 2 14.693 -9.134 1.93 1 8.42 ? N9 SAH 401 A 1 
HETATM 18 C C8 SAH . . . B 2 14.054 -8.266 2.785 1 5.37 ? C8 SAH 401 A 1 
HETATM 19 N N7 SAH . . . B 2 14.967 -7.375 3.242 1 5.26 ? N7 SAH 401 A 1 
HETATM 20 C C5 SAH . . . B 2 16.177 -7.656 2.719 1 8.22 ? C5 SAH 401 A 1 
HETATM 21 C C6 SAH . . . B 2 17.446 -7.072 2.841 1 13.39 ? C6 SAH 401 A 1 
HETATM 22 N N6 SAH . . . B 2 17.653 -6.009 3.614 1 7.8 ? N6 SAH 401 A 1 
HETATM 23 N N1 SAH . . . B 2 18.515 -7.591 2.136 1 8.41 ? N1 SAH 401 A 1 
HETATM 24 C C2 SAH . . . B 2 18.323 -8.686 1.333 1 16.13 ? C2 SAH 401 A 1 
HETATM 25 N N3 SAH . . . B 2 17.061 -9.257 1.219 1 16.02 ? N3 SAH 401 A 1 
HETATM 26 C C4 SAH . . . B 2 16.011 -8.762 1.894 1 8.75 ? C4 SAH 401 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           470 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#