data_5TZ2 # _model_server_result.job_id epD2iL3yshZ6TcdjLsoJBQ _model_server_result.datetime_utc '2024-12-24 00:29:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":203}' # _entry.id 5TZ2 # _exptl.entry_id 5TZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.97 _cell.angle_gamma 90 _cell.entry_id 5TZ2 _cell.length_a 60.567 _cell.length_b 72.934 _cell.length_c 72.698 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 A 1 NAG C 255 NAG 4 n D NAG 2 A 2 NAG C 256 NAG 4 n E NAG 1 B 1 NAG C 293 NAG 4 n E NAG 2 B 2 NAG C 294 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 147 H CYS 147 1_555 A SG CYS 203 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 23 C CYS 23 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 C ND2 ASN 5 C ASN 5 1_555 G C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale2 C ND2 ASN 16 C ASN 16 1_555 H C1 NAG . C NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 C ND2 ASN 32 C ASN 32 1_555 I C1 NAG . C NAG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 C ND2 ASN 55 C ASN 55 1_555 D C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 C ND2 ASN 93 C ASN 93 1_555 E C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 D O4 NAG . A NAG 1 1_555 D C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 E O4 NAG . B NAG 1 1_555 E C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5TZ2 _atom_sites.fract_transf_matrix[1][1] 0.016511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005674 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 GOL L 1 301 1 GOL GOL . G 6 NAG C 1 201 205 NAG NAG . H 6 NAG C 1 202 216 NAG NAG . I 6 NAG C 1 203 232 NAG NAG . J 7 HOH H 1 301 105 HOH HOH . J 7 HOH H 2 302 97 HOH HOH . J 7 HOH H 3 303 71 HOH HOH . J 7 HOH H 4 304 65 HOH HOH . J 7 HOH H 5 305 22 HOH HOH . J 7 HOH H 6 306 98 HOH HOH . J 7 HOH H 7 307 8 HOH HOH . J 7 HOH H 8 308 58 HOH HOH . J 7 HOH H 9 309 36 HOH HOH . J 7 HOH H 10 310 48 HOH HOH . J 7 HOH H 11 311 6 HOH HOH . J 7 HOH H 12 312 11 HOH HOH . J 7 HOH H 13 313 80 HOH HOH . J 7 HOH H 14 314 12 HOH HOH . J 7 HOH H 15 315 3 HOH HOH . J 7 HOH H 16 316 85 HOH HOH . J 7 HOH H 17 317 2 HOH HOH . J 7 HOH H 18 318 66 HOH HOH . J 7 HOH H 19 319 4 HOH HOH . J 7 HOH H 20 320 40 HOH HOH . J 7 HOH H 21 321 56 HOH HOH . J 7 HOH H 22 322 37 HOH HOH . J 7 HOH H 23 323 42 HOH HOH . J 7 HOH H 24 324 83 HOH HOH . J 7 HOH H 25 325 81 HOH HOH . J 7 HOH H 26 326 46 HOH HOH . J 7 HOH H 27 327 39 HOH HOH . J 7 HOH H 28 328 34 HOH HOH . J 7 HOH H 29 329 68 HOH HOH . J 7 HOH H 30 330 28 HOH HOH . J 7 HOH H 31 331 82 HOH HOH . J 7 HOH H 32 332 41 HOH HOH . J 7 HOH H 33 333 70 HOH HOH . J 7 HOH H 34 334 99 HOH HOH . J 7 HOH H 35 335 102 HOH HOH . J 7 HOH H 36 336 33 HOH HOH . J 7 HOH H 37 337 47 HOH HOH . J 7 HOH H 38 338 103 HOH HOH . J 7 HOH H 39 339 35 HOH HOH . J 7 HOH H 40 340 21 HOH HOH . J 7 HOH H 41 341 30 HOH HOH . J 7 HOH H 42 342 79 HOH HOH . J 7 HOH H 43 343 100 HOH HOH . J 7 HOH H 44 344 88 HOH HOH . J 7 HOH H 45 345 59 HOH HOH . J 7 HOH H 46 346 51 HOH HOH . K 7 HOH L 1 401 104 HOH HOH . K 7 HOH L 2 402 77 HOH HOH . K 7 HOH L 3 403 73 HOH HOH . K 7 HOH L 4 404 69 HOH HOH . K 7 HOH L 5 405 84 HOH HOH . K 7 HOH L 6 406 15 HOH HOH . K 7 HOH L 7 407 7 HOH HOH . K 7 HOH L 8 408 1 HOH HOH . K 7 HOH L 9 409 60 HOH HOH . K 7 HOH L 10 410 57 HOH HOH . K 7 HOH L 11 411 95 HOH HOH . K 7 HOH L 12 412 16 HOH HOH . K 7 HOH L 13 413 49 HOH HOH . K 7 HOH L 14 414 64 HOH HOH . K 7 HOH L 15 415 20 HOH HOH . K 7 HOH L 16 416 50 HOH HOH . K 7 HOH L 17 417 75 HOH HOH . K 7 HOH L 18 418 23 HOH HOH . K 7 HOH L 19 419 14 HOH HOH . K 7 HOH L 20 420 53 HOH HOH . K 7 HOH L 21 421 26 HOH HOH . K 7 HOH L 22 422 19 HOH HOH . K 7 HOH L 23 423 62 HOH HOH . K 7 HOH L 24 424 54 HOH HOH . K 7 HOH L 25 425 31 HOH HOH . K 7 HOH L 26 426 96 HOH HOH . K 7 HOH L 27 427 24 HOH HOH . K 7 HOH L 28 428 52 HOH HOH . K 7 HOH L 29 429 63 HOH HOH . K 7 HOH L 30 430 27 HOH HOH . K 7 HOH L 31 431 91 HOH HOH . K 7 HOH L 32 432 13 HOH HOH . K 7 HOH L 33 433 86 HOH HOH . K 7 HOH L 34 434 89 HOH HOH . K 7 HOH L 35 435 92 HOH HOH . K 7 HOH L 36 436 25 HOH HOH . K 7 HOH L 37 437 93 HOH HOH . K 7 HOH L 38 438 45 HOH HOH . K 7 HOH L 39 439 72 HOH HOH . L 7 HOH C 1 301 10 HOH HOH . L 7 HOH C 2 302 29 HOH HOH . L 7 HOH C 3 303 74 HOH HOH . L 7 HOH C 4 304 76 HOH HOH . L 7 HOH C 5 305 55 HOH HOH . L 7 HOH C 6 306 32 HOH HOH . L 7 HOH C 7 307 9 HOH HOH . L 7 HOH C 8 308 94 HOH HOH . L 7 HOH C 9 309 18 HOH HOH . L 7 HOH C 10 310 78 HOH HOH . L 7 HOH C 11 311 17 HOH HOH . L 7 HOH C 12 312 67 HOH HOH . L 7 HOH C 13 313 38 HOH HOH . L 7 HOH C 14 314 5 HOH HOH . L 7 HOH C 15 315 44 HOH HOH . L 7 HOH C 16 316 61 HOH HOH . L 7 HOH C 17 317 90 HOH HOH . L 7 HOH C 18 318 43 HOH HOH . L 7 HOH C 19 319 101 HOH HOH . L 7 HOH C 20 320 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 6 -1.149 -27.44 28.285 1 63.5 ? C1 NAG 203 C 1 HETATM 2 C C2 NAG . . . I 6 -1.775 -28.826 28.399 1 74.51 ? C2 NAG 203 C 1 HETATM 3 C C3 NAG . . . I 6 -0.726 -29.84 28.849 1 79.5 ? C3 NAG 203 C 1 HETATM 4 C C4 NAG . . . I 6 0.49 -29.788 27.934 1 82.26 ? C4 NAG 203 C 1 HETATM 5 C C5 NAG . . . I 6 1.012 -28.357 27.828 1 79.08 ? C5 NAG 203 C 1 HETATM 6 C C6 NAG . . . I 6 2.141 -28.212 26.834 1 79.69 ? C6 NAG 203 C 1 HETATM 7 C C7 NAG . . . I 6 -4.122 -29.251 28.977 1 86.16 ? C7 NAG 203 C 1 HETATM 8 C C8 NAG . . . I 6 -5.169 -29.168 30.045 1 84.52 ? C8 NAG 203 C 1 HETATM 9 N N2 NAG . . . I 6 -2.903 -28.817 29.315 1 78.18 ? N2 NAG 203 C 1 HETATM 10 O O3 NAG . . . I 6 -1.291 -31.146 28.831 1 83.62 ? O3 NAG 203 C 1 HETATM 11 O O4 NAG . . . I 6 1.519 -30.626 28.448 1 90.72 ? O4 NAG 203 C 1 HETATM 12 O O5 NAG . . . I 6 -0.041 -27.486 27.387 1 73.59 ? O5 NAG 203 C 1 HETATM 13 O O6 NAG . . . I 6 2.413 -26.846 26.551 1 79.95 ? O6 NAG 203 C 1 HETATM 14 O O7 NAG . . . I 6 -4.367 -29.692 27.858 1 96.47 ? O7 NAG 203 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #