data_5TZ2 # _model_server_result.job_id 59qcTHv12sZYhAE_zSfK-g _model_server_result.datetime_utc '2024-12-24 00:22:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 5TZ2 # _exptl.entry_id 5TZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.97 _cell.angle_gamma 90 _cell.entry_id 5TZ2 _cell.length_a 60.567 _cell.length_b 72.934 _cell.length_c 72.698 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 A 1 NAG C 255 NAG 4 n D NAG 2 A 2 NAG C 256 NAG 4 n E NAG 1 B 1 NAG C 293 NAG 4 n E NAG 2 B 2 NAG C 294 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 147 H CYS 147 1_555 A SG CYS 203 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 23 C CYS 23 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 C ND2 ASN 5 C ASN 5 1_555 G C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale2 C ND2 ASN 16 C ASN 16 1_555 H C1 NAG . C NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 C ND2 ASN 32 C ASN 32 1_555 I C1 NAG . C NAG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 C ND2 ASN 55 C ASN 55 1_555 D C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 C ND2 ASN 93 C ASN 93 1_555 E C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 D O4 NAG . A NAG 1 1_555 D C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 E O4 NAG . B NAG 1 1_555 E C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5TZ2 _atom_sites.fract_transf_matrix[1][1] 0.016511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005674 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 GOL L 1 301 1 GOL GOL . G 6 NAG C 1 201 205 NAG NAG . H 6 NAG C 1 202 216 NAG NAG . I 6 NAG C 1 203 232 NAG NAG . J 7 HOH H 1 301 105 HOH HOH . J 7 HOH H 2 302 97 HOH HOH . J 7 HOH H 3 303 71 HOH HOH . J 7 HOH H 4 304 65 HOH HOH . J 7 HOH H 5 305 22 HOH HOH . J 7 HOH H 6 306 98 HOH HOH . J 7 HOH H 7 307 8 HOH HOH . J 7 HOH H 8 308 58 HOH HOH . J 7 HOH H 9 309 36 HOH HOH . J 7 HOH H 10 310 48 HOH HOH . J 7 HOH H 11 311 6 HOH HOH . J 7 HOH H 12 312 11 HOH HOH . J 7 HOH H 13 313 80 HOH HOH . J 7 HOH H 14 314 12 HOH HOH . J 7 HOH H 15 315 3 HOH HOH . J 7 HOH H 16 316 85 HOH HOH . J 7 HOH H 17 317 2 HOH HOH . J 7 HOH H 18 318 66 HOH HOH . J 7 HOH H 19 319 4 HOH HOH . J 7 HOH H 20 320 40 HOH HOH . J 7 HOH H 21 321 56 HOH HOH . J 7 HOH H 22 322 37 HOH HOH . J 7 HOH H 23 323 42 HOH HOH . J 7 HOH H 24 324 83 HOH HOH . J 7 HOH H 25 325 81 HOH HOH . J 7 HOH H 26 326 46 HOH HOH . J 7 HOH H 27 327 39 HOH HOH . J 7 HOH H 28 328 34 HOH HOH . J 7 HOH H 29 329 68 HOH HOH . J 7 HOH H 30 330 28 HOH HOH . J 7 HOH H 31 331 82 HOH HOH . J 7 HOH H 32 332 41 HOH HOH . J 7 HOH H 33 333 70 HOH HOH . J 7 HOH H 34 334 99 HOH HOH . J 7 HOH H 35 335 102 HOH HOH . J 7 HOH H 36 336 33 HOH HOH . J 7 HOH H 37 337 47 HOH HOH . J 7 HOH H 38 338 103 HOH HOH . J 7 HOH H 39 339 35 HOH HOH . J 7 HOH H 40 340 21 HOH HOH . J 7 HOH H 41 341 30 HOH HOH . J 7 HOH H 42 342 79 HOH HOH . J 7 HOH H 43 343 100 HOH HOH . J 7 HOH H 44 344 88 HOH HOH . J 7 HOH H 45 345 59 HOH HOH . J 7 HOH H 46 346 51 HOH HOH . K 7 HOH L 1 401 104 HOH HOH . K 7 HOH L 2 402 77 HOH HOH . K 7 HOH L 3 403 73 HOH HOH . K 7 HOH L 4 404 69 HOH HOH . K 7 HOH L 5 405 84 HOH HOH . K 7 HOH L 6 406 15 HOH HOH . K 7 HOH L 7 407 7 HOH HOH . K 7 HOH L 8 408 1 HOH HOH . K 7 HOH L 9 409 60 HOH HOH . K 7 HOH L 10 410 57 HOH HOH . K 7 HOH L 11 411 95 HOH HOH . K 7 HOH L 12 412 16 HOH HOH . K 7 HOH L 13 413 49 HOH HOH . K 7 HOH L 14 414 64 HOH HOH . K 7 HOH L 15 415 20 HOH HOH . K 7 HOH L 16 416 50 HOH HOH . K 7 HOH L 17 417 75 HOH HOH . K 7 HOH L 18 418 23 HOH HOH . K 7 HOH L 19 419 14 HOH HOH . K 7 HOH L 20 420 53 HOH HOH . K 7 HOH L 21 421 26 HOH HOH . K 7 HOH L 22 422 19 HOH HOH . K 7 HOH L 23 423 62 HOH HOH . K 7 HOH L 24 424 54 HOH HOH . K 7 HOH L 25 425 31 HOH HOH . K 7 HOH L 26 426 96 HOH HOH . K 7 HOH L 27 427 24 HOH HOH . K 7 HOH L 28 428 52 HOH HOH . K 7 HOH L 29 429 63 HOH HOH . K 7 HOH L 30 430 27 HOH HOH . K 7 HOH L 31 431 91 HOH HOH . K 7 HOH L 32 432 13 HOH HOH . K 7 HOH L 33 433 86 HOH HOH . K 7 HOH L 34 434 89 HOH HOH . K 7 HOH L 35 435 92 HOH HOH . K 7 HOH L 36 436 25 HOH HOH . K 7 HOH L 37 437 93 HOH HOH . K 7 HOH L 38 438 45 HOH HOH . K 7 HOH L 39 439 72 HOH HOH . L 7 HOH C 1 301 10 HOH HOH . L 7 HOH C 2 302 29 HOH HOH . L 7 HOH C 3 303 74 HOH HOH . L 7 HOH C 4 304 76 HOH HOH . L 7 HOH C 5 305 55 HOH HOH . L 7 HOH C 6 306 32 HOH HOH . L 7 HOH C 7 307 9 HOH HOH . L 7 HOH C 8 308 94 HOH HOH . L 7 HOH C 9 309 18 HOH HOH . L 7 HOH C 10 310 78 HOH HOH . L 7 HOH C 11 311 17 HOH HOH . L 7 HOH C 12 312 67 HOH HOH . L 7 HOH C 13 313 38 HOH HOH . L 7 HOH C 14 314 5 HOH HOH . L 7 HOH C 15 315 44 HOH HOH . L 7 HOH C 16 316 61 HOH HOH . L 7 HOH C 17 317 90 HOH HOH . L 7 HOH C 18 318 43 HOH HOH . L 7 HOH C 19 319 101 HOH HOH . L 7 HOH C 20 320 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 40.452 -6.909 5.756 1 87.67 ? C1 GOL 301 L 1 HETATM 2 O O1 GOL . . . F 5 40.418 -5.696 6.474 1 88.82 ? O1 GOL 301 L 1 HETATM 3 C C2 GOL . . . F 5 40.271 -6.623 4.272 1 91.71 ? C2 GOL 301 L 1 HETATM 4 O O2 GOL . . . F 5 40.671 -5.299 4 1 93.27 ? O2 GOL 301 L 1 HETATM 5 C C3 GOL . . . F 5 41.127 -7.589 3.464 1 88.44 ? C3 GOL 301 L 1 HETATM 6 O O3 GOL . . . F 5 41.018 -7.268 2.095 1 81.94 ? O3 GOL 301 L 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #