data_5TZR # _model_server_result.job_id HUFgMZ24BvSQUUKrJKsCvQ _model_server_result.datetime_utc '2024-11-21 16:24:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tzr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2402}' # _entry.id 5TZR # _exptl.entry_id 5TZR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.625 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(5aR,6S,6aS)-3-({2',6'-dimethyl-4'-[3-(methylsulfonyl)propoxy][1,1'-biphenyl]-3-yl}methoxy)-5,5a,6,6a-tetrahydrocyclopropa[4,5]cyclopenta[1,2-c]pyridine-6-carboxylic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.93 _cell.angle_gamma 90 _cell.entry_id 5TZR _cell.length_a 100.62 _cell.length_b 62.6 _cell.length_c 106.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TZR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 92 A CYS 79 1_555 A SG CYS 183 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc1 A OG SER 261 A SER 1036 1_555 B NA NA . A NA 2401 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc2 A OG SER 342 A SER 1117 1_555 B NA NA . A NA 2401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc3 B NA NA . A NA 2401 1_555 O O HOH . A HOH 2549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? # _chem_comp.formula 'C29 H31 N O6 S' _chem_comp.formula_weight 521.625 _chem_comp.id MK6 _chem_comp.mon_nstd_flag . _chem_comp.name "(5aR,6S,6aS)-3-({2',6'-dimethyl-4'-[3-(methylsulfonyl)propoxy][1,1'-biphenyl]-3-yl}methoxy)-5,5a,6,6a-tetrahydrocyclopropa[4,5]cyclopenta[1,2-c]pyridine-6-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C26 MK6 doub 274 n y C25 C24 MK6 sing 275 n y C26 C9 MK6 sing 276 n y C24 C11 MK6 doub 277 n y C9 C8 MK6 sing 278 n n C9 C10 MK6 doub 279 n y C11 C10 MK6 sing 280 n y C11 C12 MK6 sing 281 n n C18 C17 MK6 sing 282 n n C8 O MK6 sing 283 n n C12 C17 MK6 doub 284 n y C12 C13 MK6 sing 285 n y C17 C16 MK6 sing 286 n y O C6 MK6 sing 287 n n C23 C13 MK6 sing 288 n n C13 C14 MK6 doub 289 n y O5 C28 MK6 doub 290 n n C6 N MK6 doub 291 n y C6 C5 MK6 sing 292 n y C16 C15 MK6 doub 293 n y N C7 MK6 sing 294 n y C5 C4 MK6 doub 295 n y C14 C15 MK6 sing 296 n y C7 C MK6 doub 297 n y C15 O1 MK6 sing 298 n n C27 C28 MK6 sing 299 n n C27 C1 MK6 sing 300 n n C27 C2 MK6 sing 301 n n C28 O4 MK6 sing 302 n n C4 C MK6 sing 303 n y C4 C3 MK6 sing 304 n n C C1 MK6 sing 305 n n O1 C19 MK6 sing 306 n n C3 C2 MK6 sing 307 n n C1 C2 MK6 sing 308 n n C19 C20 MK6 sing 309 n n C21 C20 MK6 sing 310 n n C21 S MK6 sing 311 n n O3 S MK6 doub 312 n n S O2 MK6 doub 313 n n S C22 MK6 sing 314 n n O4 H1 MK6 sing 315 n n C27 H2 MK6 sing 316 n n C2 H3 MK6 sing 317 n n C1 H4 MK6 sing 318 n n C7 H5 MK6 sing 319 n n C5 H6 MK6 sing 320 n n C3 H7 MK6 sing 321 n n C3 H8 MK6 sing 322 n n C8 H9 MK6 sing 323 n n C8 H10 MK6 sing 324 n n C26 H11 MK6 sing 325 n n C25 H12 MK6 sing 326 n n C24 H13 MK6 sing 327 n n C10 H14 MK6 sing 328 n n C18 H15 MK6 sing 329 n n C18 H16 MK6 sing 330 n n C18 H17 MK6 sing 331 n n C16 H18 MK6 sing 332 n n C14 H19 MK6 sing 333 n n C23 H20 MK6 sing 334 n n C23 H21 MK6 sing 335 n n C23 H22 MK6 sing 336 n n C19 H23 MK6 sing 337 n n C19 H24 MK6 sing 338 n n C20 H25 MK6 sing 339 n n C20 H26 MK6 sing 340 n n C21 H27 MK6 sing 341 n n C21 H28 MK6 sing 342 n n C22 H29 MK6 sing 343 n n C22 H30 MK6 sing 344 n n C22 H31 MK6 sing 345 n n # _atom_sites.entry_id 5TZR _atom_sites.fract_transf_matrix[1][1] 0.009938 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003408 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 2401 1 NA NA . C 3 MK6 A 1 2402 4000 MK6 MK6 . D 4 MLI A 1 2403 1 MLI MLI . E 5 OLC A 1 2404 1 OLC OLC . F 5 OLC A 1 2405 2 OLC OLC . G 5 OLC A 1 2406 3 OLC OLC . H 5 OLC A 1 2407 4 OLC OLC . I 5 OLC A 1 2408 5 OLC OLC . J 5 OLC A 1 2409 6 OLC OLC . K 5 OLC A 1 2410 7 OLC OLC . L 5 OLC A 1 2411 8 OLC OLC . M 6 1PE A 1 2412 1 1PE 1PE . N 6 1PE A 1 2413 2 1PE 1PE . O 7 HOH A 1 2501 41 HOH HOH . O 7 HOH A 2 2502 37 HOH HOH . O 7 HOH A 3 2503 11 HOH HOH . O 7 HOH A 4 2504 52 HOH HOH . O 7 HOH A 5 2505 26 HOH HOH . O 7 HOH A 6 2506 9 HOH HOH . O 7 HOH A 7 2507 10 HOH HOH . O 7 HOH A 8 2508 45 HOH HOH . O 7 HOH A 9 2509 5 HOH HOH . O 7 HOH A 10 2510 14 HOH HOH . O 7 HOH A 11 2511 7 HOH HOH . O 7 HOH A 12 2512 59 HOH HOH . O 7 HOH A 13 2513 56 HOH HOH . O 7 HOH A 14 2514 16 HOH HOH . O 7 HOH A 15 2515 4 HOH HOH . O 7 HOH A 16 2516 8 HOH HOH . O 7 HOH A 17 2517 62 HOH HOH . O 7 HOH A 18 2518 57 HOH HOH . O 7 HOH A 19 2519 44 HOH HOH . O 7 HOH A 20 2520 55 HOH HOH . O 7 HOH A 21 2521 40 HOH HOH . O 7 HOH A 22 2522 19 HOH HOH . O 7 HOH A 23 2523 20 HOH HOH . O 7 HOH A 24 2524 34 HOH HOH . O 7 HOH A 25 2525 17 HOH HOH . O 7 HOH A 26 2526 48 HOH HOH . O 7 HOH A 27 2527 28 HOH HOH . O 7 HOH A 28 2528 50 HOH HOH . O 7 HOH A 29 2529 2 HOH HOH . O 7 HOH A 30 2530 27 HOH HOH . O 7 HOH A 31 2531 58 HOH HOH . O 7 HOH A 32 2532 61 HOH HOH . O 7 HOH A 33 2533 13 HOH HOH . O 7 HOH A 34 2534 49 HOH HOH . O 7 HOH A 35 2535 29 HOH HOH . O 7 HOH A 36 2536 43 HOH HOH . O 7 HOH A 37 2537 38 HOH HOH . O 7 HOH A 38 2538 31 HOH HOH . O 7 HOH A 39 2539 18 HOH HOH . O 7 HOH A 40 2540 12 HOH HOH . O 7 HOH A 41 2541 1 HOH HOH . O 7 HOH A 42 2542 42 HOH HOH . O 7 HOH A 43 2543 21 HOH HOH . O 7 HOH A 44 2544 32 HOH HOH . O 7 HOH A 45 2545 39 HOH HOH . O 7 HOH A 46 2546 36 HOH HOH . O 7 HOH A 47 2547 15 HOH HOH . O 7 HOH A 48 2548 6 HOH HOH . O 7 HOH A 49 2549 51 HOH HOH . O 7 HOH A 50 2550 24 HOH HOH . O 7 HOH A 51 2551 23 HOH HOH . O 7 HOH A 52 2552 30 HOH HOH . O 7 HOH A 53 2553 54 HOH HOH . O 7 HOH A 54 2554 25 HOH HOH . O 7 HOH A 55 2555 3 HOH HOH . O 7 HOH A 56 2556 33 HOH HOH . O 7 HOH A 57 2557 22 HOH HOH . O 7 HOH A 58 2558 60 HOH HOH . O 7 HOH A 59 2559 53 HOH HOH . O 7 HOH A 60 2560 46 HOH HOH . O 7 HOH A 61 2561 35 HOH HOH . O 7 HOH A 62 2562 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 MK6 . . . C 3 -39.163 -3.273 59.271 1 41.92 -1 O5 MK6 2402 A 1 HETATM 2 C C28 MK6 . . . C 3 -39.848 -3.156 60.3 1 40.06 ? C28 MK6 2402 A 1 HETATM 3 O O4 MK6 . . . C 3 -39.41 -2.789 61.416 1 41.7 ? O4 MK6 2402 A 1 HETATM 4 C C27 MK6 . . . C 3 -41.33 -3.435 60.141 1 38.97 ? C27 MK6 2402 A 1 HETATM 5 C C2 MK6 . . . C 3 -42.094 -4.107 61.268 1 40.19 ? C2 MK6 2402 A 1 HETATM 6 C C1 MK6 . . . C 3 -42.294 -2.641 61.016 1 39.71 ? C1 MK6 2402 A 1 HETATM 7 C C MK6 . . . C 3 -43.684 -2.521 60.466 1 38.85 ? C MK6 2402 A 1 HETATM 8 C C7 MK6 . . . C 3 -44.391 -1.436 59.98 1 41.03 ? C7 MK6 2402 A 1 HETATM 9 N N MK6 . . . C 3 -45.598 -1.511 59.405 1 40.59 ? N MK6 2402 A 1 HETATM 10 C C6 MK6 . . . C 3 -46.152 -2.71 59.339 1 40.07 ? C6 MK6 2402 A 1 HETATM 11 C C5 MK6 . . . C 3 -45.575 -3.868 59.833 1 35.97 ? C5 MK6 2402 A 1 HETATM 12 C C4 MK6 . . . C 3 -44.306 -3.762 60.387 1 36.92 ? C4 MK6 2402 A 1 HETATM 13 C C3 MK6 . . . C 3 -43.398 -4.849 60.903 1 36.77 ? C3 MK6 2402 A 1 HETATM 14 O O MK6 . . . C 3 -47.339 -2.795 58.69 1 42.18 ? O MK6 2402 A 1 HETATM 15 C C8 MK6 . . . C 3 -48.053 -1.71 58.089 1 43.67 ? C8 MK6 2402 A 1 HETATM 16 C C9 MK6 . . . C 3 -49.375 -2.159 57.551 1 40.99 ? C9 MK6 2402 A 1 HETATM 17 C C26 MK6 . . . C 3 -49.498 -2.719 56.284 1 38.11 ? C26 MK6 2402 A 1 HETATM 18 C C25 MK6 . . . C 3 -50.75 -2.956 55.734 1 39.23 ? C25 MK6 2402 A 1 HETATM 19 C C24 MK6 . . . C 3 -51.894 -2.641 56.451 1 40.94 ? C24 MK6 2402 A 1 HETATM 20 C C11 MK6 . . . C 3 -51.799 -2.104 57.74 1 42.75 ? C11 MK6 2402 A 1 HETATM 21 C C10 MK6 . . . C 3 -50.528 -1.886 58.274 1 38.89 ? C10 MK6 2402 A 1 HETATM 22 C C12 MK6 . . . C 3 -53.015 -1.701 58.514 1 43.51 ? C12 MK6 2402 A 1 HETATM 23 C C17 MK6 . . . C 3 -53.369 -0.337 58.599 1 44.81 ? C17 MK6 2402 A 1 HETATM 24 C C18 MK6 . . . C 3 -52.624 0.729 57.835 1 42.31 ? C18 MK6 2402 A 1 HETATM 25 C C16 MK6 . . . C 3 -54.443 0.037 59.4 1 49.85 ? C16 MK6 2402 A 1 HETATM 26 C C15 MK6 . . . C 3 -55.176 -0.917 60.084 1 55.73 ? C15 MK6 2402 A 1 HETATM 27 C C14 MK6 . . . C 3 -54.845 -2.262 59.99 1 49.96 ? C14 MK6 2402 A 1 HETATM 28 C C13 MK6 . . . C 3 -53.761 -2.671 59.22 1 44.71 ? C13 MK6 2402 A 1 HETATM 29 C C23 MK6 . . . C 3 -53.383 -4.133 59.213 1 41.74 ? C23 MK6 2402 A 1 HETATM 30 O O1 MK6 . . . C 3 -56.265 -0.383 60.723 1 64.75 ? O1 MK6 2402 A 1 HETATM 31 C C19 MK6 . . . C 3 -57.242 -1.28 61.273 1 72.87 ? C19 MK6 2402 A 1 HETATM 32 C C20 MK6 . . . C 3 -57.57 -0.824 62.661 1 79.95 ? C20 MK6 2402 A 1 HETATM 33 C C21 MK6 . . . C 3 -58.406 0.417 62.608 1 86.23 ? C21 MK6 2402 A 1 HETATM 34 S S MK6 . . . C 3 -59.567 0.502 63.954 1 92.47 ? S MK6 2402 A 1 HETATM 35 O O2 MK6 . . . C 3 -60.368 -0.695 63.934 1 92.7 ? O2 MK6 2402 A 1 HETATM 36 O O3 MK6 . . . C 3 -60.259 1.76 63.87 1 93.81 ? O3 MK6 2402 A 1 HETATM 37 C C22 MK6 . . . C 3 -58.573 0.496 65.399 1 90.91 ? C22 MK6 2402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 37 #