data_5TZR
#
_model_server_result.job_id            oMRDccF0aGXQ1N4t-2iMEw 
_model_server_result.datetime_utc      '2024-12-03 19:16:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tzr 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2403}' 
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_entry.id    5TZR 
#
_exptl.entry_id    5TZR 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          108.93 
_cell.angle_gamma         90 
_cell.entry_id            5TZR 
_cell.length_a            100.62 
_cell.length_b            62.6 
_cell.length_c            106.15 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TZR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 92 A CYS 79 1_555 A SG CYS 183 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc1 A OG SER 261 A SER 1036 1_555 B NA NA . A NA 2401 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? 
metalc ? metalc2 A OG SER 342 A SER 1117 1_555 B NA NA . A NA 2401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? 
metalc ? metalc3 B NA NA . A NA 2401 1_555 O O HOH . A HOH 2549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 346 n n 
C1 C3 MLI sing 347 n n 
C1 H11 MLI sing 348 n n 
C1 H12 MLI sing 349 n n 
C2 O6 MLI doub 350 n n 
C2 O7 MLI sing 351 n n 
C3 O8 MLI doub 352 n n 
C3 O9 MLI sing 353 n n 
#
_atom_sites.entry_id                     5TZR 
_atom_sites.fract_transf_matrix[1][1]    0.009938 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003408 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015974 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009959 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 2401 1 NA NA . 
C 3 MK6 A 1 2402 4000 MK6 MK6 . 
D 4 MLI A 1 2403 1 MLI MLI . 
E 5 OLC A 1 2404 1 OLC OLC . 
F 5 OLC A 1 2405 2 OLC OLC . 
G 5 OLC A 1 2406 3 OLC OLC . 
H 5 OLC A 1 2407 4 OLC OLC . 
I 5 OLC A 1 2408 5 OLC OLC . 
J 5 OLC A 1 2409 6 OLC OLC . 
K 5 OLC A 1 2410 7 OLC OLC . 
L 5 OLC A 1 2411 8 OLC OLC . 
M 6 1PE A 1 2412 1 1PE 1PE . 
N 6 1PE A 1 2413 2 1PE 1PE . 
O 7 HOH A 1 2501 41 HOH HOH . 
O 7 HOH A 2 2502 37 HOH HOH . 
O 7 HOH A 3 2503 11 HOH HOH . 
O 7 HOH A 4 2504 52 HOH HOH . 
O 7 HOH A 5 2505 26 HOH HOH . 
O 7 HOH A 6 2506 9 HOH HOH . 
O 7 HOH A 7 2507 10 HOH HOH . 
O 7 HOH A 8 2508 45 HOH HOH . 
O 7 HOH A 9 2509 5 HOH HOH . 
O 7 HOH A 10 2510 14 HOH HOH . 
O 7 HOH A 11 2511 7 HOH HOH . 
O 7 HOH A 12 2512 59 HOH HOH . 
O 7 HOH A 13 2513 56 HOH HOH . 
O 7 HOH A 14 2514 16 HOH HOH . 
O 7 HOH A 15 2515 4 HOH HOH . 
O 7 HOH A 16 2516 8 HOH HOH . 
O 7 HOH A 17 2517 62 HOH HOH . 
O 7 HOH A 18 2518 57 HOH HOH . 
O 7 HOH A 19 2519 44 HOH HOH . 
O 7 HOH A 20 2520 55 HOH HOH . 
O 7 HOH A 21 2521 40 HOH HOH . 
O 7 HOH A 22 2522 19 HOH HOH . 
O 7 HOH A 23 2523 20 HOH HOH . 
O 7 HOH A 24 2524 34 HOH HOH . 
O 7 HOH A 25 2525 17 HOH HOH . 
O 7 HOH A 26 2526 48 HOH HOH . 
O 7 HOH A 27 2527 28 HOH HOH . 
O 7 HOH A 28 2528 50 HOH HOH . 
O 7 HOH A 29 2529 2 HOH HOH . 
O 7 HOH A 30 2530 27 HOH HOH . 
O 7 HOH A 31 2531 58 HOH HOH . 
O 7 HOH A 32 2532 61 HOH HOH . 
O 7 HOH A 33 2533 13 HOH HOH . 
O 7 HOH A 34 2534 49 HOH HOH . 
O 7 HOH A 35 2535 29 HOH HOH . 
O 7 HOH A 36 2536 43 HOH HOH . 
O 7 HOH A 37 2537 38 HOH HOH . 
O 7 HOH A 38 2538 31 HOH HOH . 
O 7 HOH A 39 2539 18 HOH HOH . 
O 7 HOH A 40 2540 12 HOH HOH . 
O 7 HOH A 41 2541 1 HOH HOH . 
O 7 HOH A 42 2542 42 HOH HOH . 
O 7 HOH A 43 2543 21 HOH HOH . 
O 7 HOH A 44 2544 32 HOH HOH . 
O 7 HOH A 45 2545 39 HOH HOH . 
O 7 HOH A 46 2546 36 HOH HOH . 
O 7 HOH A 47 2547 15 HOH HOH . 
O 7 HOH A 48 2548 6 HOH HOH . 
O 7 HOH A 49 2549 51 HOH HOH . 
O 7 HOH A 50 2550 24 HOH HOH . 
O 7 HOH A 51 2551 23 HOH HOH . 
O 7 HOH A 52 2552 30 HOH HOH . 
O 7 HOH A 53 2553 54 HOH HOH . 
O 7 HOH A 54 2554 25 HOH HOH . 
O 7 HOH A 55 2555 3 HOH HOH . 
O 7 HOH A 56 2556 33 HOH HOH . 
O 7 HOH A 57 2557 22 HOH HOH . 
O 7 HOH A 58 2558 60 HOH HOH . 
O 7 HOH A 59 2559 53 HOH HOH . 
O 7 HOH A 60 2560 46 HOH HOH . 
O 7 HOH A 61 2561 35 HOH HOH . 
O 7 HOH A 62 2562 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . D 4 -11.133 -0.634 0.78 1 78.04 ? C1 MLI 2403 A 1 
HETATM 2 C C2 MLI . . . D 4 -11.941 0.116 1.827 1 78.58 ? C2 MLI 2403 A 1 
HETATM 3 C C3 MLI . . . D 4 -9.652 -0.353 0.981 1 78.44 ? C3 MLI 2403 A 1 
HETATM 4 O O6 MLI . . . D 4 -12.826 0.916 1.434 1 74.77 ? O6 MLI 2403 A 1 
HETATM 5 O O7 MLI . . . D 4 -11.642 -0.105 3.028 1 80.74 ? O7 MLI 2403 A 1 
HETATM 6 O O8 MLI . . . D 4 -8.86 -1.315 0.955 1 79.24 ? O8 MLI 2403 A 1 
HETATM 7 O O9 MLI . . . D 4 -9.318 0.835 1.174 1 78.22 ? O9 MLI 2403 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           7 
#