data_5TZR # _model_server_result.job_id UhBDmsiyFmloY_b2niA6MA _model_server_result.datetime_utc '2024-11-21 15:59:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tzr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2408}' # _entry.id 5TZR # _exptl.entry_id 5TZR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.93 _cell.angle_gamma 90 _cell.entry_id 5TZR _cell.length_a 100.62 _cell.length_b 62.6 _cell.length_c 106.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TZR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 92 A CYS 79 1_555 A SG CYS 183 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc1 A OG SER 261 A SER 1036 1_555 B NA NA . A NA 2401 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc2 A OG SER 342 A SER 1117 1_555 B NA NA . A NA 2401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc3 B NA NA . A NA 2401 1_555 O O HOH . A HOH 2549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 354 n n C10 C9 OLC doub 355 n n C10 C11 OLC sing 356 n n C9 C8 OLC sing 357 n n C17 C16 OLC sing 358 z n C11 C12 OLC sing 359 n n C8 C7 OLC sing 360 n n C24 C22 OLC sing 361 n n C24 O25 OLC sing 362 n n C16 C15 OLC sing 363 n n C12 C13 OLC sing 364 n n C7 C6 OLC sing 365 n n C15 C14 OLC sing 366 n n C13 C14 OLC sing 367 n n C6 C5 OLC sing 368 n n C5 C4 OLC sing 369 n n C4 C3 OLC sing 370 n n C3 C2 OLC sing 371 n n C2 C1 OLC sing 372 n n C21 C22 OLC sing 373 n n C21 O20 OLC sing 374 n n C1 O19 OLC doub 375 n n C1 O20 OLC sing 376 n n C22 O23 OLC sing 377 n n C18 H18 OLC sing 378 n n C18 H18A OLC sing 379 n n C18 H18B OLC sing 380 n n C10 H10 OLC sing 381 n n C9 H9 OLC sing 382 n n C17 H17 OLC sing 383 n n C17 H17A OLC sing 384 n n C11 H11 OLC sing 385 n n C11 H11A OLC sing 386 n n C8 H8 OLC sing 387 n n C8 H8A OLC sing 388 n n C24 H24 OLC sing 389 n n C24 H24A OLC sing 390 n n C16 H16 OLC sing 391 n n C16 H16A OLC sing 392 n n C12 H12 OLC sing 393 n n C12 H12A OLC sing 394 n n C7 H7 OLC sing 395 n n C7 H7A OLC sing 396 n n C15 H15 OLC sing 397 n n C15 H15A OLC sing 398 n n C13 H13 OLC sing 399 n n C13 H13A OLC sing 400 n n C6 H6 OLC sing 401 n n C6 H6A OLC sing 402 n n C14 H14 OLC sing 403 n n C14 H14A OLC sing 404 n n C5 H5 OLC sing 405 n n C5 H5A OLC sing 406 n n C4 H4 OLC sing 407 n n C4 H4A OLC sing 408 n n C3 H3 OLC sing 409 n n C3 H3A OLC sing 410 n n C2 H2 OLC sing 411 n n C2 H2A OLC sing 412 n n C21 H21 OLC sing 413 n n C21 H21A OLC sing 414 n n C22 H22 OLC sing 415 n n O25 HO25 OLC sing 416 n n O23 HO23 OLC sing 417 n n # _atom_sites.entry_id 5TZR _atom_sites.fract_transf_matrix[1][1] 0.009938 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003408 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 2401 1 NA NA . C 3 MK6 A 1 2402 4000 MK6 MK6 . D 4 MLI A 1 2403 1 MLI MLI . E 5 OLC A 1 2404 1 OLC OLC . F 5 OLC A 1 2405 2 OLC OLC . G 5 OLC A 1 2406 3 OLC OLC . H 5 OLC A 1 2407 4 OLC OLC . I 5 OLC A 1 2408 5 OLC OLC . J 5 OLC A 1 2409 6 OLC OLC . K 5 OLC A 1 2410 7 OLC OLC . L 5 OLC A 1 2411 8 OLC OLC . M 6 1PE A 1 2412 1 1PE 1PE . N 6 1PE A 1 2413 2 1PE 1PE . O 7 HOH A 1 2501 41 HOH HOH . O 7 HOH A 2 2502 37 HOH HOH . O 7 HOH A 3 2503 11 HOH HOH . O 7 HOH A 4 2504 52 HOH HOH . O 7 HOH A 5 2505 26 HOH HOH . O 7 HOH A 6 2506 9 HOH HOH . O 7 HOH A 7 2507 10 HOH HOH . O 7 HOH A 8 2508 45 HOH HOH . O 7 HOH A 9 2509 5 HOH HOH . O 7 HOH A 10 2510 14 HOH HOH . O 7 HOH A 11 2511 7 HOH HOH . O 7 HOH A 12 2512 59 HOH HOH . O 7 HOH A 13 2513 56 HOH HOH . O 7 HOH A 14 2514 16 HOH HOH . O 7 HOH A 15 2515 4 HOH HOH . O 7 HOH A 16 2516 8 HOH HOH . O 7 HOH A 17 2517 62 HOH HOH . O 7 HOH A 18 2518 57 HOH HOH . O 7 HOH A 19 2519 44 HOH HOH . O 7 HOH A 20 2520 55 HOH HOH . O 7 HOH A 21 2521 40 HOH HOH . O 7 HOH A 22 2522 19 HOH HOH . O 7 HOH A 23 2523 20 HOH HOH . O 7 HOH A 24 2524 34 HOH HOH . O 7 HOH A 25 2525 17 HOH HOH . O 7 HOH A 26 2526 48 HOH HOH . O 7 HOH A 27 2527 28 HOH HOH . O 7 HOH A 28 2528 50 HOH HOH . O 7 HOH A 29 2529 2 HOH HOH . O 7 HOH A 30 2530 27 HOH HOH . O 7 HOH A 31 2531 58 HOH HOH . O 7 HOH A 32 2532 61 HOH HOH . O 7 HOH A 33 2533 13 HOH HOH . O 7 HOH A 34 2534 49 HOH HOH . O 7 HOH A 35 2535 29 HOH HOH . O 7 HOH A 36 2536 43 HOH HOH . O 7 HOH A 37 2537 38 HOH HOH . O 7 HOH A 38 2538 31 HOH HOH . O 7 HOH A 39 2539 18 HOH HOH . O 7 HOH A 40 2540 12 HOH HOH . O 7 HOH A 41 2541 1 HOH HOH . O 7 HOH A 42 2542 42 HOH HOH . O 7 HOH A 43 2543 21 HOH HOH . O 7 HOH A 44 2544 32 HOH HOH . O 7 HOH A 45 2545 39 HOH HOH . O 7 HOH A 46 2546 36 HOH HOH . O 7 HOH A 47 2547 15 HOH HOH . O 7 HOH A 48 2548 6 HOH HOH . O 7 HOH A 49 2549 51 HOH HOH . O 7 HOH A 50 2550 24 HOH HOH . O 7 HOH A 51 2551 23 HOH HOH . O 7 HOH A 52 2552 30 HOH HOH . O 7 HOH A 53 2553 54 HOH HOH . O 7 HOH A 54 2554 25 HOH HOH . O 7 HOH A 55 2555 3 HOH HOH . O 7 HOH A 56 2556 33 HOH HOH . O 7 HOH A 57 2557 22 HOH HOH . O 7 HOH A 58 2558 60 HOH HOH . O 7 HOH A 59 2559 53 HOH HOH . O 7 HOH A 60 2560 46 HOH HOH . O 7 HOH A 61 2561 35 HOH HOH . O 7 HOH A 62 2562 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . I 5 -36.624 -20.631 51.388 1 66.47 ? C10 OLC 2408 A 1 HETATM 2 C C9 OLC . . . I 5 -37.303 -21.162 52.413 1 62.72 ? C9 OLC 2408 A 1 HETATM 3 C C11 OLC . . . I 5 -35.28 -21.11 50.862 1 67.97 ? C11 OLC 2408 A 1 HETATM 4 C C8 OLC . . . I 5 -36.821 -22.342 53.21 1 62.49 ? C8 OLC 2408 A 1 HETATM 5 C C7 OLC . . . I 5 -37.498 -22.391 54.571 1 62.6 ? C7 OLC 2408 A 1 HETATM 6 C C6 OLC . . . I 5 -36.503 -22.887 55.6 1 62.88 ? C6 OLC 2408 A 1 HETATM 7 C C5 OLC . . . I 5 -36.748 -22.222 56.944 1 66.81 ? C5 OLC 2408 A 1 HETATM 8 C C4 OLC . . . I 5 -35.92 -22.897 58.03 1 71.35 ? C4 OLC 2408 A 1 HETATM 9 C C3 OLC . . . I 5 -36.02 -22.118 59.33 1 74.63 ? C3 OLC 2408 A 1 HETATM 10 C C2 OLC . . . I 5 -35.822 -22.996 60.563 1 77.72 ? C2 OLC 2408 A 1 HETATM 11 C C1 OLC . . . I 5 -35.802 -22.126 61.802 1 81.34 ? C1 OLC 2408 A 1 HETATM 12 O O19 OLC . . . I 5 -35.478 -20.706 61.707 1 83.73 ? O19 OLC 2408 A 1 HETATM 13 O O20 OLC . . . I 5 -36.052 -22.599 62.901 1 82.14 ? O20 OLC 2408 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #