data_5TZR # _model_server_result.job_id TBXBZeS80yGEH9aX-ODlow _model_server_result.datetime_utc '2024-11-21 16:40:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tzr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":2413}' # _entry.id 5TZR # _exptl.entry_id 5TZR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.93 _cell.angle_gamma 90 _cell.entry_id 5TZR _cell.length_a 100.62 _cell.length_b 62.6 _cell.length_c 106.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TZR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 M N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 92 A CYS 79 1_555 A SG CYS 183 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc1 A OG SER 261 A SER 1036 1_555 B NA NA . A NA 2401 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc2 A OG SER 342 A SER 1117 1_555 B NA NA . A NA 2401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc3 B NA NA . A NA 2401 1_555 O O HOH . A HOH 2549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5TZR _atom_sites.fract_transf_matrix[1][1] 0.009938 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003408 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 2401 1 NA NA . C 3 MK6 A 1 2402 4000 MK6 MK6 . D 4 MLI A 1 2403 1 MLI MLI . E 5 OLC A 1 2404 1 OLC OLC . F 5 OLC A 1 2405 2 OLC OLC . G 5 OLC A 1 2406 3 OLC OLC . H 5 OLC A 1 2407 4 OLC OLC . I 5 OLC A 1 2408 5 OLC OLC . J 5 OLC A 1 2409 6 OLC OLC . K 5 OLC A 1 2410 7 OLC OLC . L 5 OLC A 1 2411 8 OLC OLC . M 6 1PE A 1 2412 1 1PE 1PE . N 6 1PE A 1 2413 2 1PE 1PE . O 7 HOH A 1 2501 41 HOH HOH . O 7 HOH A 2 2502 37 HOH HOH . O 7 HOH A 3 2503 11 HOH HOH . O 7 HOH A 4 2504 52 HOH HOH . O 7 HOH A 5 2505 26 HOH HOH . O 7 HOH A 6 2506 9 HOH HOH . O 7 HOH A 7 2507 10 HOH HOH . O 7 HOH A 8 2508 45 HOH HOH . O 7 HOH A 9 2509 5 HOH HOH . O 7 HOH A 10 2510 14 HOH HOH . O 7 HOH A 11 2511 7 HOH HOH . O 7 HOH A 12 2512 59 HOH HOH . O 7 HOH A 13 2513 56 HOH HOH . O 7 HOH A 14 2514 16 HOH HOH . O 7 HOH A 15 2515 4 HOH HOH . O 7 HOH A 16 2516 8 HOH HOH . O 7 HOH A 17 2517 62 HOH HOH . O 7 HOH A 18 2518 57 HOH HOH . O 7 HOH A 19 2519 44 HOH HOH . O 7 HOH A 20 2520 55 HOH HOH . O 7 HOH A 21 2521 40 HOH HOH . O 7 HOH A 22 2522 19 HOH HOH . O 7 HOH A 23 2523 20 HOH HOH . O 7 HOH A 24 2524 34 HOH HOH . O 7 HOH A 25 2525 17 HOH HOH . O 7 HOH A 26 2526 48 HOH HOH . O 7 HOH A 27 2527 28 HOH HOH . O 7 HOH A 28 2528 50 HOH HOH . O 7 HOH A 29 2529 2 HOH HOH . O 7 HOH A 30 2530 27 HOH HOH . O 7 HOH A 31 2531 58 HOH HOH . O 7 HOH A 32 2532 61 HOH HOH . O 7 HOH A 33 2533 13 HOH HOH . O 7 HOH A 34 2534 49 HOH HOH . O 7 HOH A 35 2535 29 HOH HOH . O 7 HOH A 36 2536 43 HOH HOH . O 7 HOH A 37 2537 38 HOH HOH . O 7 HOH A 38 2538 31 HOH HOH . O 7 HOH A 39 2539 18 HOH HOH . O 7 HOH A 40 2540 12 HOH HOH . O 7 HOH A 41 2541 1 HOH HOH . O 7 HOH A 42 2542 42 HOH HOH . O 7 HOH A 43 2543 21 HOH HOH . O 7 HOH A 44 2544 32 HOH HOH . O 7 HOH A 45 2545 39 HOH HOH . O 7 HOH A 46 2546 36 HOH HOH . O 7 HOH A 47 2547 15 HOH HOH . O 7 HOH A 48 2548 6 HOH HOH . O 7 HOH A 49 2549 51 HOH HOH . O 7 HOH A 50 2550 24 HOH HOH . O 7 HOH A 51 2551 23 HOH HOH . O 7 HOH A 52 2552 30 HOH HOH . O 7 HOH A 53 2553 54 HOH HOH . O 7 HOH A 54 2554 25 HOH HOH . O 7 HOH A 55 2555 3 HOH HOH . O 7 HOH A 56 2556 33 HOH HOH . O 7 HOH A 57 2557 22 HOH HOH . O 7 HOH A 58 2558 60 HOH HOH . O 7 HOH A 59 2559 53 HOH HOH . O 7 HOH A 60 2560 46 HOH HOH . O 7 HOH A 61 2561 35 HOH HOH . O 7 HOH A 62 2562 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 1PE . . . N 6 2.707 11.191 8.712 1 84.84 ? C13 1PE 2413 A 1 HETATM 2 O OH4 1PE . . . N 6 3.083 9.818 8.82 1 85.66 ? OH4 1PE 2413 A 1 HETATM 3 C C14 1PE . . . N 6 4.157 7.939 7.707 1 82.53 ? C14 1PE 2413 A 1 HETATM 4 C C24 1PE . . . N 6 3.421 9.267 7.545 1 84.84 ? C24 1PE 2413 A 1 HETATM 5 O OH5 1PE . . . N 6 5.49 8.172 8.162 1 80.84 ? OH5 1PE 2413 A 1 HETATM 6 C C15 1PE . . . N 6 6.713 7.194 10.013 1 75.23 ? C15 1PE 2413 A 1 HETATM 7 C C25 1PE . . . N 6 6.103 6.968 8.63 1 78.69 ? C25 1PE 2413 A 1 HETATM 8 O OH6 1PE . . . N 6 7.072 5.96 10.652 1 71.32 ? OH6 1PE 2413 A 1 HETATM 9 C C16 1PE . . . N 6 9.415 6.408 11.264 1 69.07 ? C16 1PE 2413 A 1 HETATM 10 C C26 1PE . . . N 6 8.434 5.539 10.484 1 68.03 ? C26 1PE 2413 A 1 HETATM 11 O OH7 1PE . . . N 6 10.756 6.063 10.887 1 71.85 ? OH7 1PE 2413 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 11 #