data_5U03
#
_model_server_result.job_id            t2lYR86J-NqiUgKOVQnTBw 
_model_server_result.datetime_utc      '2024-11-27 19:59:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u03 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":601}' 
#
_entry.id    5U03 
#
_exptl.entry_id    5U03 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexadecameric 16 'representative helical assembly' 1 
? tetrameric 4 'helical asymmetric unit' 2 
? tetrameric 4 'helical asymmetric unit, std helical frame' 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 (1-4) 
A,B,C,D,E,F,G,H,I,J,K,L 2 3 
A,B,C,D,E,F,G,H,I,J,K,L 3 H 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
H 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
1 'helical symmetry operation' ? ? -0.518027 0.855364 0 -0.855364 -0.518027 0 0 0 1 0 0 -208.2 
2 'helical symmetry operation' ? ? 0.490904 0.871214 0 -0.871214 0.490904 0 0 0 1 0 0 -104.1 
3 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
4 'helical symmetry operation' ? ? 0.490904 -0.871214 0 0.871214 0.490904 0 0 0 1 0 0 104.1 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 218 A CYS 218 1_555 A SG CYS 243 A CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
disulf ? disulf2 B SG CYS 218 B CYS 218 1_555 B SG CYS 243 B CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
disulf ? disulf3 C SG CYS 218 C CYS 218 1_555 C SG CYS 243 C CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
disulf ? disulf4 D SG CYS 218 D CYS 218 1_555 D SG CYS 243 D CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     5U03 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ATP A 1 601 602 ATP ATP . 
F 3 UTP A 1 602 603 UTP UTP . 
G 2 ATP B 1 601 602 ATP ATP . 
H 3 UTP B 1 602 603 UTP UTP . 
I 2 ATP C 1 601 602 ATP ATP . 
J 3 UTP C 1 602 603 UTP UTP . 
K 2 ATP D 1 601 602 ATP ATP . 
L 3 UTP D 1 602 603 UTP UTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . G 2 14.038 8.588 0.593 1 146.53 ? PG ATP 601 B 1 
HETATM 2 O O1G ATP . . . G 2 14.493 8.162 -0.824 1 146.99 ? O1G ATP 601 B 1 
HETATM 3 O O2G ATP . . . G 2 14.579 7.553 1.604 1 145.94 ? O2G ATP 601 B 1 
HETATM 4 O O3G ATP . . . G 2 14.475 9.973 0.95 1 147.01 ? O3G ATP 601 B 1 
HETATM 5 P PB ATP . . . G 2 11.284 9.902 0.282 1 143.93 ? PB ATP 601 B 1 
HETATM 6 O O1B ATP . . . G 2 11.737 11.251 0.776 1 143.72 ? O1B ATP 601 B 1 
HETATM 7 O O2B ATP . . . G 2 9.83 9.64 0.779 1 144.88 ? O2B ATP 601 B 1 
HETATM 8 O O3B ATP . . . G 2 12.247 8.43 0.653 1 145.5 ? O3B ATP 601 B 1 
HETATM 9 P PA ATP . . . G 2 12.248 10.343 -2.415 1 140.31 ? PA ATP 601 B 1 
HETATM 10 O O1A ATP . . . G 2 12.408 11.838 -2.434 1 139.91 ? O1A ATP 601 B 1 
HETATM 11 O O2A ATP . . . G 2 13.561 9.713 -2.154 1 141.75 ? O2A ATP 601 B 1 
HETATM 12 O O3A ATP . . . G 2 11.203 9.947 -1.279 1 141.73 ? O3A ATP 601 B 1 
HETATM 13 O O5' ATP . . . G 2 11.505 9.925 -3.784 1 138.64 ? O5' ATP 601 B 1 
HETATM 14 C C5' ATP . . . G 2 11.153 8.546 -4.041 1 136.79 ? C5' ATP 601 B 1 
HETATM 15 C C4' ATP . . . G 2 10.789 8.386 -5.497 1 135.25 ? C4' ATP 601 B 1 
HETATM 16 O O4' ATP . . . G 2 9.424 8.804 -5.706 1 134.62 ? O4' ATP 601 B 1 
HETATM 17 C C3' ATP . . . G 2 11.65 9.158 -6.5 1 135.09 ? C3' ATP 601 B 1 
HETATM 18 O O3' ATP . . . G 2 12.056 8.308 -7.566 1 136.64 ? O3' ATP 601 B 1 
HETATM 19 C C2' ATP . . . G 2 10.732 10.301 -6.95 1 134.68 ? C2' ATP 601 B 1 
HETATM 20 O O2' ATP . . . G 2 10.97 10.712 -8.293 1 135.43 ? O2' ATP 601 B 1 
HETATM 21 C C1' ATP . . . G 2 9.359 9.649 -6.833 1 135.03 ? C1' ATP 601 B 1 
HETATM 22 N N9 ATP . . . G 2 8.25 10.586 -6.655 1 135.24 ? N9 ATP 601 B 1 
HETATM 23 C C8 ATP . . . G 2 7.859 11.2 -5.495 1 134.23 ? C8 ATP 601 B 1 
HETATM 24 N N7 ATP . . . G 2 6.775 11.929 -5.61 1 134.01 ? N7 ATP 601 B 1 
HETATM 25 C C5 ATP . . . G 2 6.436 11.8 -6.948 1 134.72 ? C5 ATP 601 B 1 
HETATM 26 C C6 ATP . . . G 2 5.399 12.354 -7.721 1 135.74 ? C6 ATP 601 B 1 
HETATM 27 N N6 ATP . . . G 2 4.478 13.191 -7.236 1 136.79 ? N6 ATP 601 B 1 
HETATM 28 N N1 ATP . . . G 2 5.359 12.039 -9.036 1 136.2 ? N1 ATP 601 B 1 
HETATM 29 C C2 ATP . . . G 2 6.303 11.237 -9.538 1 135.97 ? C2 ATP 601 B 1 
HETATM 30 N N3 ATP . . . G 2 7.331 10.66 -8.91 1 135.41 ? N3 ATP 601 B 1 
HETATM 31 C C4 ATP . . . G 2 7.341 10.978 -7.606 1 135.19 ? C4 ATP 601 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#