data_5U09 # _model_server_result.job_id hFaaHSFRC-XLBA_k2TZ9wA _model_server_result.datetime_utc '2024-11-21 23:17:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1210}' # _entry.id 5U09 # _exptl.entry_id 5U09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 515.955 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S,3S)-4-(4-chlorophenyl)-3-(3-cyanophenyl)butan-2-yl]-2-methyl-2-{[5-(trifluoromethyl)pyridin-2-yl]oxy}propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.72 _cell.angle_gamma 90 _cell.entry_id 5U09 _cell.length_a 50.652 _cell.length_b 80.381 _cell.length_c 81.178 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 169 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 257 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 176 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 264 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.037 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H25 Cl F3 N3 O2' _chem_comp.formula_weight 515.955 _chem_comp.id 7DY _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S,3S)-4-(4-chlorophenyl)-3-(3-cyanophenyl)butan-2-yl]-2-methyl-2-{[5-(trifluoromethyl)pyridin-2-yl]oxy}propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAT CAP 7DY sing 1 n n CAP OAE 7DY sing 2 n n CAP CAU 7DY sing 3 n n CAP CAQ 7DY sing 4 n n OAE CBD 7DY sing 5 n n NAH CBD 7DY doub 6 n y NAH CBI 7DY sing 7 n y FAC CBJ 7DY sing 8 n n CBD CBF 7DY sing 9 n y CBI CBH 7DY doub 10 n y OAF CAQ 7DY doub 11 n n CBF CBG 7DY doub 12 n y CBH CBG 7DY sing 13 n y CBH CBJ 7DY sing 14 n n CAQ NAG 7DY sing 15 n n CBJ FAD 7DY sing 16 n n CBJ FAB 7DY sing 17 n n NAG CAK 7DY sing 18 n n CAK CAN 7DY sing 19 n n CAK CAJ 7DY sing 20 n n CAL CAO 7DY sing 21 n n CAL CAJ 7DY sing 22 n n CAV CAO 7DY doub 23 n y CAV CBA 7DY sing 24 n y CAO CAW 7DY sing 25 n y CAJ CAM 7DY sing 26 n n CBA CBC 7DY doub 27 n y CAS CAM 7DY doub 28 n y CAS CAY 7DY sing 29 n y CAW CBB 7DY doub 30 n y CAM CAR 7DY sing 31 n y CBC CBB 7DY sing 32 n y CBC CLAA 7DY sing 33 n n CAY CAZ 7DY doub 34 n y CAR CAX 7DY doub 35 n y CAZ CAX 7DY sing 36 n y CAX CBE 7DY sing 37 n n CBE NAI 7DY trip 38 n n CBF H1 7DY sing 39 n n CBG H2 7DY sing 40 n n CBI H3 7DY sing 41 n n CAT H4 7DY sing 42 n n CAT H5 7DY sing 43 n n CAT H6 7DY sing 44 n n CAU H7 7DY sing 45 n n CAU H8 7DY sing 46 n n CAU H9 7DY sing 47 n n NAG H10 7DY sing 48 n n CAK H11 7DY sing 49 n n CAN H12 7DY sing 50 n n CAN H13 7DY sing 51 n n CAN H14 7DY sing 52 n n CAJ H15 7DY sing 53 n n CAR H16 7DY sing 54 n n CAZ H17 7DY sing 55 n n CAY H18 7DY sing 56 n n CAS H19 7DY sing 57 n n CAL H20 7DY sing 58 n n CAL H21 7DY sing 59 n n CAV H22 7DY sing 60 n n CBA H23 7DY sing 61 n n CBB H24 7DY sing 62 n n CAW H25 7DY sing 63 n n # _atom_sites.entry_id 5U09 _atom_sites.fract_transf_matrix[1][1] 0.019743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000591 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 1201 1 PEG PEG . C 2 PEG A 1 1202 2 PEG PEG . D 2 PEG A 1 1203 3 PEG PEG . E 2 PEG A 1 1204 4 PEG PEG . F 2 PEG A 1 1205 5 PEG PEG . G 2 PEG A 1 1206 6 PEG PEG . H 3 SO4 A 1 1207 1 SO4 SO4 . I 3 SO4 A 1 1208 2 SO4 SO4 . J 3 SO4 A 1 1209 1 SO4 SO4 . K 4 7DY A 1 1210 1 7DY 7DY . L 3 SO4 A 1 1211 1 SO4 SO4 . M 2 PEG A 1 1212 1 PEG PEG . N 2 PEG A 1 1213 1 PEG PEG . O 2 PEG A 1 1214 1 PEG PEG . P 5 HOH A 1 1301 16 HOH HOH . P 5 HOH A 2 1302 17 HOH HOH . P 5 HOH A 3 1303 39 HOH HOH . P 5 HOH A 4 1304 22 HOH HOH . P 5 HOH A 5 1305 25 HOH HOH . P 5 HOH A 6 1306 11 HOH HOH . P 5 HOH A 7 1307 62 HOH HOH . P 5 HOH A 8 1308 15 HOH HOH . P 5 HOH A 9 1309 36 HOH HOH . P 5 HOH A 10 1310 3 HOH HOH . P 5 HOH A 11 1311 4 HOH HOH . P 5 HOH A 12 1312 9 HOH HOH . P 5 HOH A 13 1313 56 HOH HOH . P 5 HOH A 14 1314 34 HOH HOH . P 5 HOH A 15 1315 13 HOH HOH . P 5 HOH A 16 1316 19 HOH HOH . P 5 HOH A 17 1317 1 HOH HOH . P 5 HOH A 18 1318 20 HOH HOH . P 5 HOH A 19 1319 49 HOH HOH . P 5 HOH A 20 1320 55 HOH HOH . P 5 HOH A 21 1321 33 HOH HOH . P 5 HOH A 22 1322 29 HOH HOH . P 5 HOH A 23 1323 52 HOH HOH . P 5 HOH A 24 1324 18 HOH HOH . P 5 HOH A 25 1325 24 HOH HOH . P 5 HOH A 26 1326 26 HOH HOH . P 5 HOH A 27 1327 2 HOH HOH . P 5 HOH A 28 1328 54 HOH HOH . P 5 HOH A 29 1329 32 HOH HOH . P 5 HOH A 30 1330 21 HOH HOH . P 5 HOH A 31 1331 37 HOH HOH . P 5 HOH A 32 1332 45 HOH HOH . P 5 HOH A 33 1333 41 HOH HOH . P 5 HOH A 34 1334 60 HOH HOH . P 5 HOH A 35 1335 31 HOH HOH . P 5 HOH A 36 1336 61 HOH HOH . P 5 HOH A 37 1337 35 HOH HOH . P 5 HOH A 38 1338 59 HOH HOH . P 5 HOH A 39 1339 53 HOH HOH . P 5 HOH A 40 1340 27 HOH HOH . P 5 HOH A 41 1341 28 HOH HOH . P 5 HOH A 42 1342 23 HOH HOH . P 5 HOH A 43 1343 12 HOH HOH . P 5 HOH A 44 1344 10 HOH HOH . P 5 HOH A 45 1345 30 HOH HOH . P 5 HOH A 46 1346 44 HOH HOH . P 5 HOH A 47 1347 8 HOH HOH . P 5 HOH A 48 1348 6 HOH HOH . P 5 HOH A 49 1349 57 HOH HOH . P 5 HOH A 50 1350 40 HOH HOH . P 5 HOH A 51 1351 46 HOH HOH . P 5 HOH A 52 1352 14 HOH HOH . P 5 HOH A 53 1353 47 HOH HOH . P 5 HOH A 54 1354 58 HOH HOH . P 5 HOH A 55 1355 43 HOH HOH . P 5 HOH A 56 1356 42 HOH HOH . P 5 HOH A 57 1357 48 HOH HOH . P 5 HOH A 58 1358 5 HOH HOH . P 5 HOH A 59 1359 50 HOH HOH . P 5 HOH A 60 1360 7 HOH HOH . P 5 HOH A 61 1361 38 HOH HOH . P 5 HOH A 62 1362 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBF 7DY . . . K 4 19.46 7.048 -12.239 1 42.46 ? CBF 7DY 1210 A 1 HETATM 2 C CBG 7DY . . . K 4 20.21 8.166 -11.896 1 35.49 ? CBG 7DY 1210 A 1 HETATM 3 C CBH 7DY . . . K 4 21.568 8.159 -12.18 1 38.84 ? CBH 7DY 1210 A 1 HETATM 4 C CBJ 7DY . . . K 4 22.372 9.235 -11.865 1 41.14 ? CBJ 7DY 1210 A 1 HETATM 5 F FAC 7DY . . . K 4 22.677 10.042 -12.939 1 36.37 ? FAC 7DY 1210 A 1 HETATM 6 F FAD 7DY . . . K 4 23.418 8.815 -11.275 1 44.17 ? FAD 7DY 1210 A 1 HETATM 7 F FAB 7DY . . . K 4 21.671 10.031 -10.983 1 42.54 ? FAB 7DY 1210 A 1 HETATM 8 C CBI 7DY . . . K 4 22.137 7.017 -12.759 1 42.6 ? CBI 7DY 1210 A 1 HETATM 9 N NAH 7DY . . . K 4 21.355 5.915 -13.114 1 36.34 ? NAH 7DY 1210 A 1 HETATM 10 C CBD 7DY . . . K 4 20.037 5.921 -12.842 1 41.28 ? CBD 7DY 1210 A 1 HETATM 11 O OAE 7DY . . . K 4 19.233 4.841 -13.119 1 44.96 ? OAE 7DY 1210 A 1 HETATM 12 C CAP 7DY . . . K 4 19.852 3.558 -13.219 1 50.09 ? CAP 7DY 1210 A 1 HETATM 13 C CAT 7DY . . . K 4 20.546 3.36 -14.554 1 51.91 ? CAT 7DY 1210 A 1 HETATM 14 C CAU 7DY . . . K 4 18.925 2.414 -12.898 1 47.08 ? CAU 7DY 1210 A 1 HETATM 15 C CAQ 7DY . . . K 4 20.949 3.468 -12.134 1 46.13 ? CAQ 7DY 1210 A 1 HETATM 16 O OAF 7DY . . . K 4 22.096 3.145 -12.43 1 47.33 ? OAF 7DY 1210 A 1 HETATM 17 N NAG 7DY . . . K 4 20.543 3.698 -10.875 1 45.13 ? NAG 7DY 1210 A 1 HETATM 18 C CAK 7DY . . . K 4 21.496 3.786 -9.739 1 51.51 ? CAK 7DY 1210 A 1 HETATM 19 C CAN 7DY . . . K 4 21.162 5.029 -8.906 1 53.7 ? CAN 7DY 1210 A 1 HETATM 20 C CAJ 7DY . . . K 4 21.425 2.564 -8.81 1 48.04 ? CAJ 7DY 1210 A 1 HETATM 21 C CAM 7DY . . . K 4 22.489 2.581 -7.883 1 44.09 ? CAM 7DY 1210 A 1 HETATM 22 C CAR 7DY . . . K 4 22.25 2.697 -6.503 1 40.34 ? CAR 7DY 1210 A 1 HETATM 23 C CAX 7DY . . . K 4 23.315 2.667 -5.587 1 39.4 ? CAX 7DY 1210 A 1 HETATM 24 C CBE 7DY . . . K 4 23.079 2.792 -4.141 1 41.54 ? CBE 7DY 1210 A 1 HETATM 25 N NAI 7DY . . . K 4 22.947 2.892 -2.94 1 40.16 ? NAI 7DY 1210 A 1 HETATM 26 C CAZ 7DY . . . K 4 24.624 2.551 -6.042 1 36.35 ? CAZ 7DY 1210 A 1 HETATM 27 C CAY 7DY . . . K 4 24.861 2.466 -7.41 1 43.26 ? CAY 7DY 1210 A 1 HETATM 28 C CAS 7DY . . . K 4 23.805 2.486 -8.329 1 42.53 ? CAS 7DY 1210 A 1 HETATM 29 C CAL 7DY . . . K 4 21.43 1.271 -9.656 1 49.31 ? CAL 7DY 1210 A 1 HETATM 30 C CAO 7DY . . . K 4 21.066 0.139 -8.909 1 46.58 ? CAO 7DY 1210 A 1 HETATM 31 C CAV 7DY . . . K 4 21.758 -1.051 -9.087 1 43.53 ? CAV 7DY 1210 A 1 HETATM 32 C CBA 7DY . . . K 4 21.427 -2.163 -8.332 1 46.36 ? CBA 7DY 1210 A 1 HETATM 33 C CBC 7DY . . . K 4 20.368 -2.112 -7.442 1 48.12 ? CBC 7DY 1210 A 1 HETATM 34 CL CLAA 7DY . . . K 4 19.897 -3.515 -6.58 1 57.85 ? CLAA 7DY 1210 A 1 HETATM 35 C CBB 7DY . . . K 4 19.648 -0.944 -7.295 1 46.73 ? CBB 7DY 1210 A 1 HETATM 36 C CAW 7DY . . . K 4 19.981 0.171 -8.041 1 48.21 ? CAW 7DY 1210 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 36 #