data_5U09 # _model_server_result.job_id KDqkrL7jWZRHthpPnjH0_Q _model_server_result.datetime_utc '2024-11-21 22:28:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1214}' # _entry.id 5U09 # _exptl.entry_id 5U09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.72 _cell.angle_gamma 90 _cell.entry_id 5U09 _cell.length_a 50.652 _cell.length_b 80.381 _cell.length_c 81.178 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 M N N ? 2 N N N ? 2 O N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 169 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 257 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 176 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 264 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.037 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 300 n n C1 C2 PEG sing 301 n n C1 H11 PEG sing 302 n n C1 H12 PEG sing 303 n n O1 HO1 PEG sing 304 n n C2 O2 PEG sing 305 n n C2 H21 PEG sing 306 n n C2 H22 PEG sing 307 n n O2 C3 PEG sing 308 n n C3 C4 PEG sing 309 n n C3 H31 PEG sing 310 n n C3 H32 PEG sing 311 n n C4 O4 PEG sing 312 n n C4 H41 PEG sing 313 n n C4 H42 PEG sing 314 n n O4 HO4 PEG sing 315 n n # _atom_sites.entry_id 5U09 _atom_sites.fract_transf_matrix[1][1] 0.019743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000591 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 1201 1 PEG PEG . C 2 PEG A 1 1202 2 PEG PEG . D 2 PEG A 1 1203 3 PEG PEG . E 2 PEG A 1 1204 4 PEG PEG . F 2 PEG A 1 1205 5 PEG PEG . G 2 PEG A 1 1206 6 PEG PEG . H 3 SO4 A 1 1207 1 SO4 SO4 . I 3 SO4 A 1 1208 2 SO4 SO4 . J 3 SO4 A 1 1209 1 SO4 SO4 . K 4 7DY A 1 1210 1 7DY 7DY . L 3 SO4 A 1 1211 1 SO4 SO4 . M 2 PEG A 1 1212 1 PEG PEG . N 2 PEG A 1 1213 1 PEG PEG . O 2 PEG A 1 1214 1 PEG PEG . P 5 HOH A 1 1301 16 HOH HOH . P 5 HOH A 2 1302 17 HOH HOH . P 5 HOH A 3 1303 39 HOH HOH . P 5 HOH A 4 1304 22 HOH HOH . P 5 HOH A 5 1305 25 HOH HOH . P 5 HOH A 6 1306 11 HOH HOH . P 5 HOH A 7 1307 62 HOH HOH . P 5 HOH A 8 1308 15 HOH HOH . P 5 HOH A 9 1309 36 HOH HOH . P 5 HOH A 10 1310 3 HOH HOH . P 5 HOH A 11 1311 4 HOH HOH . P 5 HOH A 12 1312 9 HOH HOH . P 5 HOH A 13 1313 56 HOH HOH . P 5 HOH A 14 1314 34 HOH HOH . P 5 HOH A 15 1315 13 HOH HOH . P 5 HOH A 16 1316 19 HOH HOH . P 5 HOH A 17 1317 1 HOH HOH . P 5 HOH A 18 1318 20 HOH HOH . P 5 HOH A 19 1319 49 HOH HOH . P 5 HOH A 20 1320 55 HOH HOH . P 5 HOH A 21 1321 33 HOH HOH . P 5 HOH A 22 1322 29 HOH HOH . P 5 HOH A 23 1323 52 HOH HOH . P 5 HOH A 24 1324 18 HOH HOH . P 5 HOH A 25 1325 24 HOH HOH . P 5 HOH A 26 1326 26 HOH HOH . P 5 HOH A 27 1327 2 HOH HOH . P 5 HOH A 28 1328 54 HOH HOH . P 5 HOH A 29 1329 32 HOH HOH . P 5 HOH A 30 1330 21 HOH HOH . P 5 HOH A 31 1331 37 HOH HOH . P 5 HOH A 32 1332 45 HOH HOH . P 5 HOH A 33 1333 41 HOH HOH . P 5 HOH A 34 1334 60 HOH HOH . P 5 HOH A 35 1335 31 HOH HOH . P 5 HOH A 36 1336 61 HOH HOH . P 5 HOH A 37 1337 35 HOH HOH . P 5 HOH A 38 1338 59 HOH HOH . P 5 HOH A 39 1339 53 HOH HOH . P 5 HOH A 40 1340 27 HOH HOH . P 5 HOH A 41 1341 28 HOH HOH . P 5 HOH A 42 1342 23 HOH HOH . P 5 HOH A 43 1343 12 HOH HOH . P 5 HOH A 44 1344 10 HOH HOH . P 5 HOH A 45 1345 30 HOH HOH . P 5 HOH A 46 1346 44 HOH HOH . P 5 HOH A 47 1347 8 HOH HOH . P 5 HOH A 48 1348 6 HOH HOH . P 5 HOH A 49 1349 57 HOH HOH . P 5 HOH A 50 1350 40 HOH HOH . P 5 HOH A 51 1351 46 HOH HOH . P 5 HOH A 52 1352 14 HOH HOH . P 5 HOH A 53 1353 47 HOH HOH . P 5 HOH A 54 1354 58 HOH HOH . P 5 HOH A 55 1355 43 HOH HOH . P 5 HOH A 56 1356 42 HOH HOH . P 5 HOH A 57 1357 48 HOH HOH . P 5 HOH A 58 1358 5 HOH HOH . P 5 HOH A 59 1359 50 HOH HOH . P 5 HOH A 60 1360 7 HOH HOH . P 5 HOH A 61 1361 38 HOH HOH . P 5 HOH A 62 1362 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . O 2 -0.614 -31.61 32.376 1 51.67 ? C1 PEG 1214 A 1 HETATM 2 O O1 PEG . . . O 2 -1.832 -31.149 31.861 1 39.96 ? O1 PEG 1214 A 1 HETATM 3 C C2 PEG . . . O 2 -0.509 -33.137 32.213 1 62.96 ? C2 PEG 1214 A 1 HETATM 4 O O2 PEG . . . O 2 -0.569 -33.782 33.465 1 61.42 ? O2 PEG 1214 A 1 HETATM 5 C C3 PEG . . . O 2 -0.881 -35.151 33.458 1 67.24 ? C3 PEG 1214 A 1 HETATM 6 C C4 PEG . . . O 2 -1.604 -35.503 34.761 1 70.11 ? C4 PEG 1214 A 1 HETATM 7 O O4 PEG . . . O 2 -2.893 -36.008 34.505 1 74.77 ? O4 PEG 1214 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #