data_5U0G # _model_server_result.job_id SzQHEIvHGZZTQdcPdcA63Q _model_server_result.datetime_utc '2024-12-18 02:01:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u0g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5U0G # _exptl.entry_id 5U0G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.41 _cell.angle_gamma 90 _cell.entry_id 5U0G _cell.length_a 42.436 _cell.length_b 41.617 _cell.length_c 72.068 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U0G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N16 7QY . A 7QY 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 170 n n C1 C2 GOL sing 171 n n C1 H11 GOL sing 172 n n C1 H12 GOL sing 173 n n O1 HO1 GOL sing 174 n n C2 O2 GOL sing 175 n n C2 C3 GOL sing 176 n n C2 H2 GOL sing 177 n n O2 HO2 GOL sing 178 n n C3 O3 GOL sing 179 n n C3 H31 GOL sing 180 n n C3 H32 GOL sing 181 n n O3 HO3 GOL sing 182 n n # _atom_sites.entry_id 5U0G _atom_sites.fract_transf_matrix[1][1] 0.023565 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006055 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 7QY A 1 302 1 7QY UNL . D 4 GOL A 1 303 1 GOL GOL . E 5 EDO A 1 304 2 EDO EDO . F 6 HOH A 1 401 206 HOH HOH . F 6 HOH A 2 402 186 HOH HOH . F 6 HOH A 3 403 204 HOH HOH . F 6 HOH A 4 404 247 HOH HOH . F 6 HOH A 5 405 136 HOH HOH . F 6 HOH A 6 406 17 HOH HOH . F 6 HOH A 7 407 32 HOH HOH . F 6 HOH A 8 408 25 HOH HOH . F 6 HOH A 9 409 195 HOH HOH . F 6 HOH A 10 410 88 HOH HOH . F 6 HOH A 11 411 108 HOH HOH . F 6 HOH A 12 412 197 HOH HOH . F 6 HOH A 13 413 26 HOH HOH . F 6 HOH A 14 414 77 HOH HOH . F 6 HOH A 15 415 144 HOH HOH . F 6 HOH A 16 416 21 HOH HOH . F 6 HOH A 17 417 202 HOH HOH . F 6 HOH A 18 418 52 HOH HOH . F 6 HOH A 19 419 9 HOH HOH . F 6 HOH A 20 420 150 HOH HOH . F 6 HOH A 21 421 217 HOH HOH . F 6 HOH A 22 422 223 HOH HOH . F 6 HOH A 23 423 157 HOH HOH . F 6 HOH A 24 424 57 HOH HOH . F 6 HOH A 25 425 107 HOH HOH . F 6 HOH A 26 426 135 HOH HOH . F 6 HOH A 27 427 101 HOH HOH . F 6 HOH A 28 428 91 HOH HOH . F 6 HOH A 29 429 65 HOH HOH . F 6 HOH A 30 430 24 HOH HOH . F 6 HOH A 31 431 233 HOH HOH . F 6 HOH A 32 432 23 HOH HOH . F 6 HOH A 33 433 13 HOH HOH . F 6 HOH A 34 434 94 HOH HOH . F 6 HOH A 35 435 210 HOH HOH . F 6 HOH A 36 436 37 HOH HOH . F 6 HOH A 37 437 187 HOH HOH . F 6 HOH A 38 438 226 HOH HOH . F 6 HOH A 39 439 1 HOH HOH . F 6 HOH A 40 440 208 HOH HOH . F 6 HOH A 41 441 176 HOH HOH . F 6 HOH A 42 442 246 HOH HOH . F 6 HOH A 43 443 54 HOH HOH . F 6 HOH A 44 444 196 HOH HOH . F 6 HOH A 45 445 171 HOH HOH . F 6 HOH A 46 446 181 HOH HOH . F 6 HOH A 47 447 70 HOH HOH . F 6 HOH A 48 448 191 HOH HOH . F 6 HOH A 49 449 18 HOH HOH . F 6 HOH A 50 450 133 HOH HOH . F 6 HOH A 51 451 42 HOH HOH . F 6 HOH A 52 452 97 HOH HOH . F 6 HOH A 53 453 109 HOH HOH . F 6 HOH A 54 454 6 HOH HOH . F 6 HOH A 55 455 90 HOH HOH . F 6 HOH A 56 456 14 HOH HOH . F 6 HOH A 57 457 69 HOH HOH . F 6 HOH A 58 458 185 HOH HOH . F 6 HOH A 59 459 63 HOH HOH . F 6 HOH A 60 460 232 HOH HOH . F 6 HOH A 61 461 38 HOH HOH . F 6 HOH A 62 462 242 HOH HOH . F 6 HOH A 63 463 89 HOH HOH . F 6 HOH A 64 464 126 HOH HOH . F 6 HOH A 65 465 216 HOH HOH . F 6 HOH A 66 466 66 HOH HOH . F 6 HOH A 67 467 2 HOH HOH . F 6 HOH A 68 468 161 HOH HOH . F 6 HOH A 69 469 73 HOH HOH . F 6 HOH A 70 470 104 HOH HOH . F 6 HOH A 71 471 170 HOH HOH . F 6 HOH A 72 472 85 HOH HOH . F 6 HOH A 73 473 76 HOH HOH . F 6 HOH A 74 474 200 HOH HOH . F 6 HOH A 75 475 95 HOH HOH . F 6 HOH A 76 476 141 HOH HOH . F 6 HOH A 77 477 162 HOH HOH . F 6 HOH A 78 478 33 HOH HOH . F 6 HOH A 79 479 140 HOH HOH . F 6 HOH A 80 480 5 HOH HOH . F 6 HOH A 81 481 11 HOH HOH . F 6 HOH A 82 482 43 HOH HOH . F 6 HOH A 83 483 99 HOH HOH . F 6 HOH A 84 484 120 HOH HOH . F 6 HOH A 85 485 165 HOH HOH . F 6 HOH A 86 486 4 HOH HOH . F 6 HOH A 87 487 60 HOH HOH . F 6 HOH A 88 488 3 HOH HOH . F 6 HOH A 89 489 158 HOH HOH . F 6 HOH A 90 490 180 HOH HOH . F 6 HOH A 91 491 12 HOH HOH . F 6 HOH A 92 492 129 HOH HOH . F 6 HOH A 93 493 128 HOH HOH . F 6 HOH A 94 494 39 HOH HOH . F 6 HOH A 95 495 15 HOH HOH . F 6 HOH A 96 496 53 HOH HOH . F 6 HOH A 97 497 84 HOH HOH . F 6 HOH A 98 498 212 HOH HOH . F 6 HOH A 99 499 81 HOH HOH . F 6 HOH A 100 500 182 HOH HOH . F 6 HOH A 101 501 98 HOH HOH . F 6 HOH A 102 502 131 HOH HOH . F 6 HOH A 103 503 220 HOH HOH . F 6 HOH A 104 504 56 HOH HOH . F 6 HOH A 105 505 27 HOH HOH . F 6 HOH A 106 506 22 HOH HOH . F 6 HOH A 107 507 71 HOH HOH . F 6 HOH A 108 508 237 HOH HOH . F 6 HOH A 109 509 29 HOH HOH . F 6 HOH A 110 510 45 HOH HOH . F 6 HOH A 111 511 174 HOH HOH . F 6 HOH A 112 512 87 HOH HOH . F 6 HOH A 113 513 86 HOH HOH . F 6 HOH A 114 514 62 HOH HOH . F 6 HOH A 115 515 166 HOH HOH . F 6 HOH A 116 516 213 HOH HOH . F 6 HOH A 117 517 172 HOH HOH . F 6 HOH A 118 518 147 HOH HOH . F 6 HOH A 119 519 48 HOH HOH . F 6 HOH A 120 520 188 HOH HOH . F 6 HOH A 121 521 160 HOH HOH . F 6 HOH A 122 522 64 HOH HOH . F 6 HOH A 123 523 198 HOH HOH . F 6 HOH A 124 524 248 HOH HOH . F 6 HOH A 125 525 36 HOH HOH . F 6 HOH A 126 526 83 HOH HOH . F 6 HOH A 127 527 143 HOH HOH . F 6 HOH A 128 528 80 HOH HOH . F 6 HOH A 129 529 207 HOH HOH . F 6 HOH A 130 530 149 HOH HOH . F 6 HOH A 131 531 113 HOH HOH . F 6 HOH A 132 532 193 HOH HOH . F 6 HOH A 133 533 55 HOH HOH . F 6 HOH A 134 534 7 HOH HOH . F 6 HOH A 135 535 199 HOH HOH . F 6 HOH A 136 536 205 HOH HOH . F 6 HOH A 137 537 148 HOH HOH . F 6 HOH A 138 538 169 HOH HOH . F 6 HOH A 139 539 46 HOH HOH . F 6 HOH A 140 540 164 HOH HOH . F 6 HOH A 141 541 122 HOH HOH . F 6 HOH A 142 542 190 HOH HOH . F 6 HOH A 143 543 10 HOH HOH . F 6 HOH A 144 544 115 HOH HOH . F 6 HOH A 145 545 34 HOH HOH . F 6 HOH A 146 546 110 HOH HOH . F 6 HOH A 147 547 106 HOH HOH . F 6 HOH A 148 548 163 HOH HOH . F 6 HOH A 149 549 183 HOH HOH . F 6 HOH A 150 550 79 HOH HOH . F 6 HOH A 151 551 50 HOH HOH . F 6 HOH A 152 552 51 HOH HOH . F 6 HOH A 153 553 44 HOH HOH . F 6 HOH A 154 554 116 HOH HOH . F 6 HOH A 155 555 31 HOH HOH . F 6 HOH A 156 556 179 HOH HOH . F 6 HOH A 157 557 74 HOH HOH . F 6 HOH A 158 558 146 HOH HOH . F 6 HOH A 159 559 47 HOH HOH . F 6 HOH A 160 560 252 HOH HOH . F 6 HOH A 161 561 227 HOH HOH . F 6 HOH A 162 562 209 HOH HOH . F 6 HOH A 163 563 58 HOH HOH . F 6 HOH A 164 564 28 HOH HOH . F 6 HOH A 165 565 8 HOH HOH . F 6 HOH A 166 566 139 HOH HOH . F 6 HOH A 167 567 119 HOH HOH . F 6 HOH A 168 568 59 HOH HOH . F 6 HOH A 169 569 96 HOH HOH . F 6 HOH A 170 570 159 HOH HOH . F 6 HOH A 171 571 168 HOH HOH . F 6 HOH A 172 572 30 HOH HOH . F 6 HOH A 173 573 103 HOH HOH . F 6 HOH A 174 574 121 HOH HOH . F 6 HOH A 175 575 35 HOH HOH . F 6 HOH A 176 576 68 HOH HOH . F 6 HOH A 177 577 194 HOH HOH . F 6 HOH A 178 578 82 HOH HOH . F 6 HOH A 179 579 192 HOH HOH . F 6 HOH A 180 580 137 HOH HOH . F 6 HOH A 181 581 20 HOH HOH . F 6 HOH A 182 582 16 HOH HOH . F 6 HOH A 183 583 201 HOH HOH . F 6 HOH A 184 584 142 HOH HOH . F 6 HOH A 185 585 78 HOH HOH . F 6 HOH A 186 586 112 HOH HOH . F 6 HOH A 187 587 72 HOH HOH . F 6 HOH A 188 588 184 HOH HOH . F 6 HOH A 189 589 19 HOH HOH . F 6 HOH A 190 590 134 HOH HOH . F 6 HOH A 191 591 111 HOH HOH . F 6 HOH A 192 592 67 HOH HOH . F 6 HOH A 193 593 189 HOH HOH . F 6 HOH A 194 594 75 HOH HOH . F 6 HOH A 195 595 93 HOH HOH . F 6 HOH A 196 596 214 HOH HOH . F 6 HOH A 197 597 61 HOH HOH . F 6 HOH A 198 598 127 HOH HOH . F 6 HOH A 199 599 92 HOH HOH . F 6 HOH A 200 600 239 HOH HOH . F 6 HOH A 201 601 250 HOH HOH . F 6 HOH A 202 602 125 HOH HOH . F 6 HOH A 203 603 177 HOH HOH . F 6 HOH A 204 604 151 HOH HOH . F 6 HOH A 205 605 254 HOH HOH . F 6 HOH A 206 606 145 HOH HOH . F 6 HOH A 207 607 152 HOH HOH . F 6 HOH A 208 608 218 HOH HOH . F 6 HOH A 209 609 245 HOH HOH . F 6 HOH A 210 610 222 HOH HOH . F 6 HOH A 211 611 105 HOH HOH . F 6 HOH A 212 612 102 HOH HOH . F 6 HOH A 213 613 124 HOH HOH . F 6 HOH A 214 614 238 HOH HOH . F 6 HOH A 215 615 251 HOH HOH . F 6 HOH A 216 616 215 HOH HOH . F 6 HOH A 217 617 153 HOH HOH . F 6 HOH A 218 618 224 HOH HOH . F 6 HOH A 219 619 231 HOH HOH . F 6 HOH A 220 620 175 HOH HOH . F 6 HOH A 221 621 219 HOH HOH . F 6 HOH A 222 622 230 HOH HOH . F 6 HOH A 223 623 244 HOH HOH . F 6 HOH A 224 624 253 HOH HOH . F 6 HOH A 225 625 49 HOH HOH . F 6 HOH A 226 626 41 HOH HOH . F 6 HOH A 227 627 130 HOH HOH . F 6 HOH A 228 628 123 HOH HOH . F 6 HOH A 229 629 173 HOH HOH . F 6 HOH A 230 630 100 HOH HOH . F 6 HOH A 231 631 249 HOH HOH . F 6 HOH A 232 632 236 HOH HOH . F 6 HOH A 233 633 221 HOH HOH . F 6 HOH A 234 634 114 HOH HOH . F 6 HOH A 235 635 154 HOH HOH . F 6 HOH A 236 636 235 HOH HOH . F 6 HOH A 237 637 211 HOH HOH . F 6 HOH A 238 638 155 HOH HOH . F 6 HOH A 239 639 225 HOH HOH . F 6 HOH A 240 640 117 HOH HOH . F 6 HOH A 241 641 167 HOH HOH . F 6 HOH A 242 642 156 HOH HOH . F 6 HOH A 243 643 228 HOH HOH . F 6 HOH A 244 644 229 HOH HOH . F 6 HOH A 245 645 255 HOH HOH . F 6 HOH A 246 646 118 HOH HOH . F 6 HOH A 247 647 243 HOH HOH . F 6 HOH A 248 648 234 HOH HOH . F 6 HOH A 249 649 138 HOH HOH . F 6 HOH A 250 650 203 HOH HOH . F 6 HOH A 251 651 178 HOH HOH . F 6 HOH A 252 652 40 HOH HOH . F 6 HOH A 253 653 240 HOH HOH . F 6 HOH A 254 654 132 HOH HOH . F 6 HOH A 255 655 241 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -19.413 -16.177 22.571 0.9 33.74 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 4 -20.488 -15.733 21.721 0.9 39.06 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 4 -18.112 -16.248 21.77 0.9 29.23 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 4 -17.104 -15.572 22.475 0.9 29 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 4 -17.544 -17.634 21.577 0.9 31.73 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 4 -16.807 -17.667 20.346 0.9 28.94 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #