data_5U0I # _model_server_result.job_id 7W27fnfYhpZ6AgFuTMJ4HQ _model_server_result.datetime_utc '2024-12-26 10:18:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u0i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":702}' # _entry.id 5U0I # _exptl.entry_id 5U0I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U0I _cell.length_a 75.29 _cell.length_b 75.29 _cell.length_c 88.31 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U0I _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G O HOH . A HOH 863 3_644 F NA NA . B NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.118 ? metalc ? metalc2 B OG1 THR 34 B THR 563 1_555 E NA NA . B NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc3 B OG SER 57 B SER 586 1_555 D NA NA . B NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc4 B O LEU 99 B LEU 628 1_555 E NA NA . B NA 702 3_644 ? ? ? ? ? ? ? ? ? ? ? ? 3.152 ? metalc ? metalc5 B O HIS 100 B HIS 629 1_555 E NA NA . B NA 702 3_644 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? metalc ? metalc6 D NA NA . B NA 701 1_555 H O HOH . B HOH 929 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc7 E NA NA . B NA 702 1_555 H O HOH . B HOH 837 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc8 E NA NA . B NA 702 1_555 H O HOH . B HOH 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc9 F NA NA . B NA 703 1_555 H O HOH . B HOH 835 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc10 F NA NA . B NA 703 1_555 H O HOH . B HOH 969 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5U0I _atom_sites.fract_transf_matrix[1][1] 0.013282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 701 1 CL CL . D 3 NA B 1 701 1 NA NA . E 3 NA B 1 702 2 NA NA . F 3 NA B 1 703 3 NA NA . G 4 HOH A 1 801 246 HOH HOH . G 4 HOH A 2 802 105 HOH HOH . G 4 HOH A 3 803 114 HOH HOH . G 4 HOH A 4 804 274 HOH HOH . G 4 HOH A 5 805 83 HOH HOH . G 4 HOH A 6 806 224 HOH HOH . G 4 HOH A 7 807 99 HOH HOH . G 4 HOH A 8 808 214 HOH HOH . G 4 HOH A 9 809 155 HOH HOH . G 4 HOH A 10 810 66 HOH HOH . G 4 HOH A 11 811 91 HOH HOH . G 4 HOH A 12 812 173 HOH HOH . G 4 HOH A 13 813 51 HOH HOH . G 4 HOH A 14 814 85 HOH HOH . G 4 HOH A 15 815 64 HOH HOH . G 4 HOH A 16 816 19 HOH HOH . G 4 HOH A 17 817 147 HOH HOH . G 4 HOH A 18 818 226 HOH HOH . G 4 HOH A 19 819 20 HOH HOH . G 4 HOH A 20 820 7 HOH HOH . G 4 HOH A 21 821 269 HOH HOH . G 4 HOH A 22 822 152 HOH HOH . G 4 HOH A 23 823 189 HOH HOH . G 4 HOH A 24 824 59 HOH HOH . G 4 HOH A 25 825 73 HOH HOH . G 4 HOH A 26 826 8 HOH HOH . G 4 HOH A 27 827 125 HOH HOH . G 4 HOH A 28 828 69 HOH HOH . G 4 HOH A 29 829 172 HOH HOH . G 4 HOH A 30 830 148 HOH HOH . G 4 HOH A 31 831 247 HOH HOH . G 4 HOH A 32 832 1 HOH HOH . G 4 HOH A 33 833 153 HOH HOH . G 4 HOH A 34 834 92 HOH HOH . G 4 HOH A 35 835 21 HOH HOH . G 4 HOH A 36 836 118 HOH HOH . G 4 HOH A 37 837 175 HOH HOH . G 4 HOH A 38 838 84 HOH HOH . G 4 HOH A 39 839 177 HOH HOH . G 4 HOH A 40 840 5 HOH HOH . G 4 HOH A 41 841 45 HOH HOH . G 4 HOH A 42 842 87 HOH HOH . G 4 HOH A 43 843 52 HOH HOH . G 4 HOH A 44 844 221 HOH HOH . G 4 HOH A 45 845 49 HOH HOH . G 4 HOH A 46 846 144 HOH HOH . G 4 HOH A 47 847 182 HOH HOH . G 4 HOH A 48 848 95 HOH HOH . G 4 HOH A 49 849 145 HOH HOH . G 4 HOH A 50 850 185 HOH HOH . G 4 HOH A 51 851 244 HOH HOH . G 4 HOH A 52 852 207 HOH HOH . G 4 HOH A 53 853 117 HOH HOH . G 4 HOH A 54 854 141 HOH HOH . G 4 HOH A 55 855 26 HOH HOH . G 4 HOH A 56 856 180 HOH HOH . G 4 HOH A 57 857 218 HOH HOH . G 4 HOH A 58 858 174 HOH HOH . G 4 HOH A 59 859 102 HOH HOH . G 4 HOH A 60 860 161 HOH HOH . G 4 HOH A 61 861 225 HOH HOH . G 4 HOH A 62 862 15 HOH HOH . G 4 HOH A 63 863 16 HOH HOH . G 4 HOH A 64 864 272 HOH HOH . G 4 HOH A 65 865 81 HOH HOH . G 4 HOH A 66 866 240 HOH HOH . G 4 HOH A 67 867 217 HOH HOH . G 4 HOH A 68 868 208 HOH HOH . G 4 HOH A 69 869 160 HOH HOH . G 4 HOH A 70 870 227 HOH HOH . G 4 HOH A 71 871 63 HOH HOH . G 4 HOH A 72 872 14 HOH HOH . G 4 HOH A 73 873 32 HOH HOH . G 4 HOH A 74 874 113 HOH HOH . G 4 HOH A 75 875 30 HOH HOH . G 4 HOH A 76 876 171 HOH HOH . G 4 HOH A 77 877 209 HOH HOH . G 4 HOH A 78 878 205 HOH HOH . G 4 HOH A 79 879 93 HOH HOH . G 4 HOH A 80 880 57 HOH HOH . G 4 HOH A 81 881 163 HOH HOH . G 4 HOH A 82 882 166 HOH HOH . G 4 HOH A 83 883 215 HOH HOH . G 4 HOH A 84 884 149 HOH HOH . G 4 HOH A 85 885 249 HOH HOH . G 4 HOH A 86 886 41 HOH HOH . G 4 HOH A 87 887 213 HOH HOH . G 4 HOH A 88 888 78 HOH HOH . G 4 HOH A 89 889 223 HOH HOH . G 4 HOH A 90 890 107 HOH HOH . G 4 HOH A 91 891 220 HOH HOH . G 4 HOH A 92 892 264 HOH HOH . G 4 HOH A 93 893 169 HOH HOH . G 4 HOH A 94 894 206 HOH HOH . G 4 HOH A 95 895 243 HOH HOH . G 4 HOH A 96 896 159 HOH HOH . G 4 HOH A 97 897 222 HOH HOH . G 4 HOH A 98 898 170 HOH HOH . G 4 HOH A 99 899 74 HOH HOH . G 4 HOH A 100 900 130 HOH HOH . G 4 HOH A 101 901 210 HOH HOH . G 4 HOH A 102 902 212 HOH HOH . G 4 HOH A 103 903 100 HOH HOH . G 4 HOH A 104 904 75 HOH HOH . G 4 HOH A 105 905 242 HOH HOH . G 4 HOH A 106 906 181 HOH HOH . G 4 HOH A 107 907 271 HOH HOH . G 4 HOH A 108 908 187 HOH HOH . G 4 HOH A 109 909 190 HOH HOH . G 4 HOH A 110 910 211 HOH HOH . G 4 HOH A 111 911 248 HOH HOH . G 4 HOH A 112 912 156 HOH HOH . G 4 HOH A 113 913 188 HOH HOH . G 4 HOH A 114 914 167 HOH HOH . H 4 HOH B 1 801 276 HOH HOH . H 4 HOH B 2 802 12 HOH HOH . H 4 HOH B 3 803 268 HOH HOH . H 4 HOH B 4 804 36 HOH HOH . H 4 HOH B 5 805 164 HOH HOH . H 4 HOH B 6 806 200 HOH HOH . H 4 HOH B 7 807 133 HOH HOH . H 4 HOH B 8 808 98 HOH HOH . H 4 HOH B 9 809 23 HOH HOH . H 4 HOH B 10 810 104 HOH HOH . H 4 HOH B 11 811 266 HOH HOH . H 4 HOH B 12 812 162 HOH HOH . H 4 HOH B 13 813 234 HOH HOH . H 4 HOH B 14 814 237 HOH HOH . H 4 HOH B 15 815 127 HOH HOH . H 4 HOH B 16 816 252 HOH HOH . H 4 HOH B 17 817 199 HOH HOH . H 4 HOH B 18 818 126 HOH HOH . H 4 HOH B 19 819 103 HOH HOH . H 4 HOH B 20 820 18 HOH HOH . H 4 HOH B 21 821 194 HOH HOH . H 4 HOH B 22 822 121 HOH HOH . H 4 HOH B 23 823 61 HOH HOH . H 4 HOH B 24 824 108 HOH HOH . H 4 HOH B 25 825 13 HOH HOH . H 4 HOH B 26 826 77 HOH HOH . H 4 HOH B 27 827 35 HOH HOH . H 4 HOH B 28 828 62 HOH HOH . H 4 HOH B 29 829 28 HOH HOH . H 4 HOH B 30 830 37 HOH HOH . H 4 HOH B 31 831 68 HOH HOH . H 4 HOH B 32 832 48 HOH HOH . H 4 HOH B 33 833 86 HOH HOH . H 4 HOH B 34 834 245 HOH HOH . H 4 HOH B 35 835 111 HOH HOH . H 4 HOH B 36 836 10 HOH HOH . H 4 HOH B 37 837 24 HOH HOH . H 4 HOH B 38 838 25 HOH HOH . H 4 HOH B 39 839 94 HOH HOH . H 4 HOH B 40 840 239 HOH HOH . H 4 HOH B 41 841 27 HOH HOH . H 4 HOH B 42 842 137 HOH HOH . H 4 HOH B 43 843 168 HOH HOH . H 4 HOH B 44 844 201 HOH HOH . H 4 HOH B 45 845 258 HOH HOH . H 4 HOH B 46 846 72 HOH HOH . H 4 HOH B 47 847 82 HOH HOH . H 4 HOH B 48 848 158 HOH HOH . H 4 HOH B 49 849 120 HOH HOH . H 4 HOH B 50 850 191 HOH HOH . H 4 HOH B 51 851 106 HOH HOH . H 4 HOH B 52 852 76 HOH HOH . H 4 HOH B 53 853 54 HOH HOH . H 4 HOH B 54 854 192 HOH HOH . H 4 HOH B 55 855 88 HOH HOH . H 4 HOH B 56 856 89 HOH HOH . H 4 HOH B 57 857 132 HOH HOH . H 4 HOH B 58 858 42 HOH HOH . H 4 HOH B 59 859 4 HOH HOH . H 4 HOH B 60 860 67 HOH HOH . H 4 HOH B 61 861 115 HOH HOH . H 4 HOH B 62 862 40 HOH HOH . H 4 HOH B 63 863 267 HOH HOH . H 4 HOH B 64 864 44 HOH HOH . H 4 HOH B 65 865 229 HOH HOH . H 4 HOH B 66 866 22 HOH HOH . H 4 HOH B 67 867 71 HOH HOH . H 4 HOH B 68 868 138 HOH HOH . H 4 HOH B 69 869 122 HOH HOH . H 4 HOH B 70 870 216 HOH HOH . H 4 HOH B 71 871 43 HOH HOH . H 4 HOH B 72 872 29 HOH HOH . H 4 HOH B 73 873 79 HOH HOH . H 4 HOH B 74 874 146 HOH HOH . H 4 HOH B 75 875 46 HOH HOH . H 4 HOH B 76 876 17 HOH HOH . H 4 HOH B 77 877 6 HOH HOH . H 4 HOH B 78 878 56 HOH HOH . H 4 HOH B 79 879 9 HOH HOH . H 4 HOH B 80 880 238 HOH HOH . H 4 HOH B 81 881 58 HOH HOH . H 4 HOH B 82 882 140 HOH HOH . H 4 HOH B 83 883 38 HOH HOH . H 4 HOH B 84 884 96 HOH HOH . H 4 HOH B 85 885 278 HOH HOH . H 4 HOH B 86 886 134 HOH HOH . H 4 HOH B 87 887 124 HOH HOH . H 4 HOH B 88 888 97 HOH HOH . H 4 HOH B 89 889 31 HOH HOH . H 4 HOH B 90 890 39 HOH HOH . H 4 HOH B 91 891 198 HOH HOH . H 4 HOH B 92 892 47 HOH HOH . H 4 HOH B 93 893 2 HOH HOH . H 4 HOH B 94 894 197 HOH HOH . H 4 HOH B 95 895 139 HOH HOH . H 4 HOH B 96 896 60 HOH HOH . H 4 HOH B 97 897 55 HOH HOH . H 4 HOH B 98 898 135 HOH HOH . H 4 HOH B 99 899 3 HOH HOH . H 4 HOH B 100 900 253 HOH HOH . H 4 HOH B 101 901 34 HOH HOH . H 4 HOH B 102 902 283 HOH HOH . H 4 HOH B 103 903 131 HOH HOH . H 4 HOH B 104 904 101 HOH HOH . H 4 HOH B 105 905 33 HOH HOH . H 4 HOH B 106 906 219 HOH HOH . H 4 HOH B 107 907 11 HOH HOH . H 4 HOH B 108 908 236 HOH HOH . H 4 HOH B 109 909 250 HOH HOH . H 4 HOH B 110 910 277 HOH HOH . H 4 HOH B 111 911 228 HOH HOH . H 4 HOH B 112 912 112 HOH HOH . H 4 HOH B 113 913 285 HOH HOH . H 4 HOH B 114 914 186 HOH HOH . H 4 HOH B 115 915 150 HOH HOH . H 4 HOH B 116 916 265 HOH HOH . H 4 HOH B 117 917 270 HOH HOH . H 4 HOH B 118 918 116 HOH HOH . H 4 HOH B 119 919 70 HOH HOH . H 4 HOH B 120 920 262 HOH HOH . H 4 HOH B 121 921 50 HOH HOH . H 4 HOH B 122 922 136 HOH HOH . H 4 HOH B 123 923 282 HOH HOH . H 4 HOH B 124 924 154 HOH HOH . H 4 HOH B 125 925 109 HOH HOH . H 4 HOH B 126 926 251 HOH HOH . H 4 HOH B 127 927 80 HOH HOH . H 4 HOH B 128 928 241 HOH HOH . H 4 HOH B 129 929 257 HOH HOH . H 4 HOH B 130 930 179 HOH HOH . H 4 HOH B 131 931 119 HOH HOH . H 4 HOH B 132 932 128 HOH HOH . H 4 HOH B 133 933 280 HOH HOH . H 4 HOH B 134 934 129 HOH HOH . H 4 HOH B 135 935 231 HOH HOH . H 4 HOH B 136 936 65 HOH HOH . H 4 HOH B 137 937 143 HOH HOH . H 4 HOH B 138 938 260 HOH HOH . H 4 HOH B 139 939 254 HOH HOH . H 4 HOH B 140 940 256 HOH HOH . H 4 HOH B 141 941 255 HOH HOH . H 4 HOH B 142 942 151 HOH HOH . H 4 HOH B 143 943 232 HOH HOH . H 4 HOH B 144 944 53 HOH HOH . H 4 HOH B 145 945 142 HOH HOH . H 4 HOH B 146 946 233 HOH HOH . H 4 HOH B 147 947 110 HOH HOH . H 4 HOH B 148 948 259 HOH HOH . H 4 HOH B 149 949 261 HOH HOH . H 4 HOH B 150 950 123 HOH HOH . H 4 HOH B 151 951 204 HOH HOH . H 4 HOH B 152 952 202 HOH HOH . H 4 HOH B 153 953 195 HOH HOH . H 4 HOH B 154 954 178 HOH HOH . H 4 HOH B 155 955 157 HOH HOH . H 4 HOH B 156 956 273 HOH HOH . H 4 HOH B 157 957 165 HOH HOH . H 4 HOH B 158 958 184 HOH HOH . H 4 HOH B 159 959 183 HOH HOH . H 4 HOH B 160 960 279 HOH HOH . H 4 HOH B 161 961 281 HOH HOH . H 4 HOH B 162 962 235 HOH HOH . H 4 HOH B 163 963 196 HOH HOH . H 4 HOH B 164 964 90 HOH HOH . H 4 HOH B 165 965 193 HOH HOH . H 4 HOH B 166 966 176 HOH HOH . H 4 HOH B 167 967 230 HOH HOH . H 4 HOH B 168 968 275 HOH HOH . H 4 HOH B 169 969 284 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 80.625 _atom_site.Cartn_y 31.575 _atom_site.Cartn_z 103.23 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 702 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #