data_5U0M # _model_server_result.job_id 7hU1xPw-hj2u8wmhYl2DGw _model_server_result.datetime_utc '2025-06-21 07:45:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 5U0M # _exptl.entry_id 5U0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U0M _cell.length_a 99.347 _cell.length_b 99.347 _cell.length_c 254.425 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 103 n n C1 C2 EDO sing 104 n n C1 H11 EDO sing 105 n n C1 H12 EDO sing 106 n n O1 HO1 EDO sing 107 n n C2 O2 EDO sing 108 n n C2 H21 EDO sing 109 n n C2 H22 EDO sing 110 n n O2 HO2 EDO sing 111 n n # _atom_sites.entry_id 5U0M _atom_sites.fract_transf_matrix[1][1] 0.010066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 501 1 EDO EDO . D 2 EDO A 1 502 2 EDO EDO . E 3 CIT A 1 503 3 CIT CIT . F 4 NAD A 1 504 705 NAD NA2 . G 2 EDO B 1 501 3 EDO EDO . H 3 CIT B 1 502 1 CIT CIT . I 4 NAD B 1 503 704 NAD NA2 . J 5 HOH A 1 601 34 HOH HOH . J 5 HOH A 2 602 52 HOH HOH . J 5 HOH A 3 603 39 HOH HOH . J 5 HOH A 4 604 28 HOH HOH . J 5 HOH A 5 605 54 HOH HOH . J 5 HOH A 6 606 42 HOH HOH . J 5 HOH A 7 607 7 HOH HOH . J 5 HOH A 8 608 45 HOH HOH . J 5 HOH A 9 609 21 HOH HOH . J 5 HOH A 10 610 47 HOH HOH . J 5 HOH A 11 611 5 HOH HOH . J 5 HOH A 12 612 4 HOH HOH . J 5 HOH A 13 613 23 HOH HOH . J 5 HOH A 14 614 15 HOH HOH . J 5 HOH A 15 615 8 HOH HOH . J 5 HOH A 16 616 43 HOH HOH . J 5 HOH A 17 617 58 HOH HOH . J 5 HOH A 18 618 13 HOH HOH . J 5 HOH A 19 619 11 HOH HOH . J 5 HOH A 20 620 24 HOH HOH . K 5 HOH B 1 601 56 HOH HOH . K 5 HOH B 2 602 55 HOH HOH . K 5 HOH B 3 603 57 HOH HOH . K 5 HOH B 4 604 38 HOH HOH . K 5 HOH B 5 605 17 HOH HOH . K 5 HOH B 6 606 20 HOH HOH . K 5 HOH B 7 607 50 HOH HOH . K 5 HOH B 8 608 27 HOH HOH . K 5 HOH B 9 609 35 HOH HOH . K 5 HOH B 10 610 9 HOH HOH . K 5 HOH B 11 611 14 HOH HOH . K 5 HOH B 12 612 3 HOH HOH . K 5 HOH B 13 613 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 2 64.628 -20.207 61.458 1 77.71 ? C1 EDO 501 B 1 HETATM 2 O O1 EDO . . . G 2 66.042 -20.136 61.232 1 76.64 ? O1 EDO 501 B 1 HETATM 3 C C2 EDO . . . G 2 64.259 -19.432 62.72 1 77.69 ? C2 EDO 501 B 1 HETATM 4 O O2 EDO . . . G 2 64.665 -18.064 62.593 1 77.22 ? O2 EDO 501 B 1 HETATM 5 H H11 EDO . . . G 2 64.097 -19.788 60.601 1 93.25 ? H11 EDO 501 B 1 HETATM 6 H H12 EDO . . . G 2 64.326 -21.251 61.567 1 93.25 ? H12 EDO 501 B 1 HETATM 7 H HO1 EDO . . . G 2 66.265 -20.63 60.431 1 91.96 ? HO1 EDO 501 B 1 HETATM 8 H H21 EDO . . . G 2 63.18 -19.482 62.879 1 93.23 ? H21 EDO 501 B 1 HETATM 9 H H22 EDO . . . G 2 64.751 -19.882 63.585 1 93.23 ? H22 EDO 501 B 1 HETATM 10 H HO2 EDO . . . G 2 64.427 -17.582 63.396 1 92.67 ? HO2 EDO 501 B 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #