data_5U0M # _model_server_result.job_id 3Hy19YMgmmfMuNjZ5GsnnQ _model_server_result.datetime_utc '2025-06-22 21:27:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 5U0M # _exptl.entry_id 5U0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U0M _cell.length_a 99.347 _cell.length_b 99.347 _cell.length_c 254.425 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 5U0M _atom_sites.fract_transf_matrix[1][1] 0.010066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 501 1 EDO EDO . D 2 EDO A 1 502 2 EDO EDO . E 3 CIT A 1 503 3 CIT CIT . F 4 NAD A 1 504 705 NAD NA2 . G 2 EDO B 1 501 3 EDO EDO . H 3 CIT B 1 502 1 CIT CIT . I 4 NAD B 1 503 704 NAD NA2 . J 5 HOH A 1 601 34 HOH HOH . J 5 HOH A 2 602 52 HOH HOH . J 5 HOH A 3 603 39 HOH HOH . J 5 HOH A 4 604 28 HOH HOH . J 5 HOH A 5 605 54 HOH HOH . J 5 HOH A 6 606 42 HOH HOH . J 5 HOH A 7 607 7 HOH HOH . J 5 HOH A 8 608 45 HOH HOH . J 5 HOH A 9 609 21 HOH HOH . J 5 HOH A 10 610 47 HOH HOH . J 5 HOH A 11 611 5 HOH HOH . J 5 HOH A 12 612 4 HOH HOH . J 5 HOH A 13 613 23 HOH HOH . J 5 HOH A 14 614 15 HOH HOH . J 5 HOH A 15 615 8 HOH HOH . J 5 HOH A 16 616 43 HOH HOH . J 5 HOH A 17 617 58 HOH HOH . J 5 HOH A 18 618 13 HOH HOH . J 5 HOH A 19 619 11 HOH HOH . J 5 HOH A 20 620 24 HOH HOH . K 5 HOH B 1 601 56 HOH HOH . K 5 HOH B 2 602 55 HOH HOH . K 5 HOH B 3 603 57 HOH HOH . K 5 HOH B 4 604 38 HOH HOH . K 5 HOH B 5 605 17 HOH HOH . K 5 HOH B 6 606 20 HOH HOH . K 5 HOH B 7 607 50 HOH HOH . K 5 HOH B 8 608 27 HOH HOH . K 5 HOH B 9 609 35 HOH HOH . K 5 HOH B 10 610 9 HOH HOH . K 5 HOH B 11 611 14 HOH HOH . K 5 HOH B 12 612 3 HOH HOH . K 5 HOH B 13 613 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . H 3 62.601 -16.567 29.804 1 100.88 ? C1 CIT 502 B 1 HETATM 2 O O1 CIT . . . H 3 62.489 -15.322 29.77 1 98.36 ? O1 CIT 502 B 1 HETATM 3 O O2 CIT . . . H 3 61.591 -17.257 30.058 1 99.89 ? O2 CIT 502 B 1 HETATM 4 C C2 CIT . . . H 3 63.932 -17.233 29.543 1 104.35 ? C2 CIT 502 B 1 HETATM 5 C C3 CIT . . . H 3 65.036 -16.565 30.36 1 106.3 ? C3 CIT 502 B 1 HETATM 6 O O7 CIT . . . H 3 64.504 -16.155 31.644 1 101.77 ? O7 CIT 502 B 1 HETATM 7 C C4 CIT . . . H 3 66.193 -17.526 30.597 1 106.11 ? C4 CIT 502 B 1 HETATM 8 C C5 CIT . . . H 3 65.83 -18.483 31.702 1 105.87 ? C5 CIT 502 B 1 HETATM 9 O O3 CIT . . . H 3 64.958 -19.362 31.531 1 105.43 ? O3 CIT 502 B 1 HETATM 10 O O4 CIT . . . H 3 66.405 -18.398 32.807 1 108.31 ? O4 CIT 502 B 1 HETATM 11 C C6 CIT . . . H 3 65.547 -15.343 29.61 1 112.91 ? C6 CIT 502 B 1 HETATM 12 O O5 CIT . . . H 3 64.884 -14.838 28.679 1 115.8 ? O5 CIT 502 B 1 HETATM 13 O O6 CIT . . . H 3 66.643 -14.826 29.916 1 115.49 ? O6 CIT 502 B 1 HETATM 14 H H21 CIT . . . H 3 63.869 -18.289 29.809 1 125.22 ? H21 CIT 502 B 1 HETATM 15 H H22 CIT . . . H 3 64.172 -17.167 28.482 1 125.22 ? H22 CIT 502 B 1 HETATM 16 H HO7 CIT . . . H 3 64.593 -15.184 31.739 1 122.12 ? HO7 CIT 502 B 1 HETATM 17 H H41 CIT . . . H 3 67.088 -16.967 30.871 1 127.33 ? H41 CIT 502 B 1 HETATM 18 H H42 CIT . . . H 3 66.405 -18.081 29.683 1 127.33 ? H42 CIT 502 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #