data_5U0N
#
_model_server_result.job_id            DZC0WTCRCoAg9zW-oqkmsQ 
_model_server_result.datetime_utc      '2024-11-13 20:30:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u0n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5U0N 
#
_exptl.entry_id    5U0N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5U0N 
_cell.length_a            57.975 
_cell.length_b            67.385 
_cell.length_c            69.974 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5U0N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 118 A GLU 98 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc2 A OD2 ASP 226 A ASP 206 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc3 C MG MG . A MG 402 1_555 E O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc4 C MG MG . A MG 402 1_555 E O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc5 C MG MG . A MG 402 1_555 E O HOH . A HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 344 n n 
N HN1 SAH sing 345 n n 
N HN2 SAH sing 346 n n 
CA CB SAH sing 347 n n 
CA C SAH sing 348 n n 
CA HA SAH sing 349 n n 
CB CG SAH sing 350 n n 
CB HB1 SAH sing 351 n n 
CB HB2 SAH sing 352 n n 
CG SD SAH sing 353 n n 
CG HG1 SAH sing 354 n n 
CG HG2 SAH sing 355 n n 
SD C5' SAH sing 356 n n 
C O SAH doub 357 n n 
C OXT SAH sing 358 n n 
OXT HXT SAH sing 359 n n 
C5' C4' SAH sing 360 n n 
C5' "H5'1" SAH sing 361 n n 
C5' "H5'2" SAH sing 362 n n 
C4' O4' SAH sing 363 n n 
C4' C3' SAH sing 364 n n 
C4' H4' SAH sing 365 n n 
O4' C1' SAH sing 366 n n 
C3' O3' SAH sing 367 n n 
C3' C2' SAH sing 368 n n 
C3' H3' SAH sing 369 n n 
O3' HO3' SAH sing 370 n n 
C2' O2' SAH sing 371 n n 
C2' C1' SAH sing 372 n n 
C2' H2' SAH sing 373 n n 
O2' HO2' SAH sing 374 n n 
C1' N9 SAH sing 375 n n 
C1' H1' SAH sing 376 n n 
N9 C8 SAH sing 377 n y 
N9 C4 SAH sing 378 n y 
C8 N7 SAH doub 379 n y 
C8 H8 SAH sing 380 n n 
N7 C5 SAH sing 381 n y 
C5 C6 SAH sing 382 n y 
C5 C4 SAH doub 383 n y 
C6 N6 SAH sing 384 n n 
C6 N1 SAH doub 385 n y 
N6 HN61 SAH sing 386 n n 
N6 HN62 SAH sing 387 n n 
N1 C2 SAH sing 388 n y 
C2 N3 SAH doub 389 n y 
C2 H2 SAH sing 390 n n 
N3 C4 SAH sing 391 n y 
#
_atom_sites.entry_id                     5U0N 
_atom_sites.fract_transf_matrix[1][1]    0.017249 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01484 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014291 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAH A 1 401 1 SAH SAH . 
C 3 MG A 1 402 1 MG MG . 
D 4 7XP A 1 403 1 7XP DRG . 
E 5 HOH A 1 501 107 HOH HOH . 
E 5 HOH A 2 502 86 HOH HOH . 
E 5 HOH A 3 503 121 HOH HOH . 
E 5 HOH A 4 504 37 HOH HOH . 
E 5 HOH A 5 505 18 HOH HOH . 
E 5 HOH A 6 506 122 HOH HOH . 
E 5 HOH A 7 507 80 HOH HOH . 
E 5 HOH A 8 508 3 HOH HOH . 
E 5 HOH A 9 509 137 HOH HOH . 
E 5 HOH A 10 510 90 HOH HOH . 
E 5 HOH A 11 511 117 HOH HOH . 
E 5 HOH A 12 512 78 HOH HOH . 
E 5 HOH A 13 513 24 HOH HOH . 
E 5 HOH A 14 514 28 HOH HOH . 
E 5 HOH A 15 515 75 HOH HOH . 
E 5 HOH A 16 516 32 HOH HOH . 
E 5 HOH A 17 517 30 HOH HOH . 
E 5 HOH A 18 518 56 HOH HOH . 
E 5 HOH A 19 519 26 HOH HOH . 
E 5 HOH A 20 520 4 HOH HOH . 
E 5 HOH A 21 521 102 HOH HOH . 
E 5 HOH A 22 522 97 HOH HOH . 
E 5 HOH A 23 523 125 HOH HOH . 
E 5 HOH A 24 524 72 HOH HOH . 
E 5 HOH A 25 525 123 HOH HOH . 
E 5 HOH A 26 526 89 HOH HOH . 
E 5 HOH A 27 527 120 HOH HOH . 
E 5 HOH A 28 528 39 HOH HOH . 
E 5 HOH A 29 529 106 HOH HOH . 
E 5 HOH A 30 530 19 HOH HOH . 
E 5 HOH A 31 531 16 HOH HOH . 
E 5 HOH A 32 532 17 HOH HOH . 
E 5 HOH A 33 533 8 HOH HOH . 
E 5 HOH A 34 534 65 HOH HOH . 
E 5 HOH A 35 535 76 HOH HOH . 
E 5 HOH A 36 536 25 HOH HOH . 
E 5 HOH A 37 537 101 HOH HOH . 
E 5 HOH A 38 538 85 HOH HOH . 
E 5 HOH A 39 539 1 HOH HOH . 
E 5 HOH A 40 540 73 HOH HOH . 
E 5 HOH A 41 541 135 HOH HOH . 
E 5 HOH A 42 542 31 HOH HOH . 
E 5 HOH A 43 543 5 HOH HOH . 
E 5 HOH A 44 544 111 HOH HOH . 
E 5 HOH A 45 545 22 HOH HOH . 
E 5 HOH A 46 546 113 HOH HOH . 
E 5 HOH A 47 547 15 HOH HOH . 
E 5 HOH A 48 548 58 HOH HOH . 
E 5 HOH A 49 549 6 HOH HOH . 
E 5 HOH A 50 550 35 HOH HOH . 
E 5 HOH A 51 551 67 HOH HOH . 
E 5 HOH A 52 552 46 HOH HOH . 
E 5 HOH A 53 553 54 HOH HOH . 
E 5 HOH A 54 554 81 HOH HOH . 
E 5 HOH A 55 555 112 HOH HOH . 
E 5 HOH A 56 556 140 HOH HOH . 
E 5 HOH A 57 557 38 HOH HOH . 
E 5 HOH A 58 558 13 HOH HOH . 
E 5 HOH A 59 559 130 HOH HOH . 
E 5 HOH A 60 560 42 HOH HOH . 
E 5 HOH A 61 561 70 HOH HOH . 
E 5 HOH A 62 562 7 HOH HOH . 
E 5 HOH A 63 563 119 HOH HOH . 
E 5 HOH A 64 564 9 HOH HOH . 
E 5 HOH A 65 565 139 HOH HOH . 
E 5 HOH A 66 566 96 HOH HOH . 
E 5 HOH A 67 567 104 HOH HOH . 
E 5 HOH A 68 568 40 HOH HOH . 
E 5 HOH A 69 569 83 HOH HOH . 
E 5 HOH A 70 570 60 HOH HOH . 
E 5 HOH A 71 571 62 HOH HOH . 
E 5 HOH A 72 572 79 HOH HOH . 
E 5 HOH A 73 573 129 HOH HOH . 
E 5 HOH A 74 574 68 HOH HOH . 
E 5 HOH A 75 575 126 HOH HOH . 
E 5 HOH A 76 576 51 HOH HOH . 
E 5 HOH A 77 577 114 HOH HOH . 
E 5 HOH A 78 578 34 HOH HOH . 
E 5 HOH A 79 579 55 HOH HOH . 
E 5 HOH A 80 580 82 HOH HOH . 
E 5 HOH A 81 581 128 HOH HOH . 
E 5 HOH A 82 582 87 HOH HOH . 
E 5 HOH A 83 583 103 HOH HOH . 
E 5 HOH A 84 584 91 HOH HOH . 
E 5 HOH A 85 585 133 HOH HOH . 
E 5 HOH A 86 586 118 HOH HOH . 
E 5 HOH A 87 587 132 HOH HOH . 
E 5 HOH A 88 588 116 HOH HOH . 
E 5 HOH A 89 589 98 HOH HOH . 
E 5 HOH A 90 590 45 HOH HOH . 
E 5 HOH A 91 591 48 HOH HOH . 
E 5 HOH A 92 592 108 HOH HOH . 
E 5 HOH A 93 593 47 HOH HOH . 
E 5 HOH A 94 594 105 HOH HOH . 
E 5 HOH A 95 595 41 HOH HOH . 
E 5 HOH A 96 596 115 HOH HOH . 
E 5 HOH A 97 597 12 HOH HOH . 
E 5 HOH A 98 598 50 HOH HOH . 
E 5 HOH A 99 599 94 HOH HOH . 
E 5 HOH A 100 600 138 HOH HOH . 
E 5 HOH A 101 601 44 HOH HOH . 
E 5 HOH A 102 602 99 HOH HOH . 
E 5 HOH A 103 603 71 HOH HOH . 
E 5 HOH A 104 604 131 HOH HOH . 
E 5 HOH A 105 605 93 HOH HOH . 
E 5 HOH A 106 606 59 HOH HOH . 
E 5 HOH A 107 607 109 HOH HOH . 
E 5 HOH A 108 608 49 HOH HOH . 
E 5 HOH A 109 609 52 HOH HOH . 
E 5 HOH A 110 610 141 HOH HOH . 
E 5 HOH A 111 611 74 HOH HOH . 
E 5 HOH A 112 612 69 HOH HOH . 
E 5 HOH A 113 613 110 HOH HOH . 
E 5 HOH A 114 614 100 HOH HOH . 
E 5 HOH A 115 615 36 HOH HOH . 
E 5 HOH A 116 616 92 HOH HOH . 
E 5 HOH A 117 617 134 HOH HOH . 
E 5 HOH A 118 618 127 HOH HOH . 
E 5 HOH A 119 619 124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . B 2 59.542 70.748 12.572 1 13.31 ? N SAH 401 A 1 
HETATM 2 C CA SAH . . . B 2 58.857 71.801 13.322 1 13.58 ? CA SAH 401 A 1 
HETATM 3 C CB SAH . . . B 2 59.683 72.321 14.499 1 12.74 ? CB SAH 401 A 1 
HETATM 4 C CG SAH . . . B 2 61.071 72.858 14.162 1 12.25 ? CG SAH 401 A 1 
HETATM 5 S SD SAH . . . B 2 61.774 73.776 15.547 1 15.77 ? SD SAH 401 A 1 
HETATM 6 C C SAH . . . B 2 58.485 72.967 12.403 1 15.03 ? C SAH 401 A 1 
HETATM 7 O O SAH . . . B 2 59.014 73.095 11.289 1 16.11 ? O SAH 401 A 1 
HETATM 8 O OXT SAH . . . B 2 57.648 73.801 12.761 1 16.84 ? OXT SAH 401 A 1 
HETATM 9 C C5' SAH . . . B 2 63.124 72.621 15.947 1 13.84 ? C5' SAH 401 A 1 
HETATM 10 C C4' SAH . . . B 2 62.683 71.32 16.625 1 12.86 ? C4' SAH 401 A 1 
HETATM 11 O O4' SAH . . . B 2 63.798 70.473 16.872 1 17.52 ? O4' SAH 401 A 1 
HETATM 12 C C3' SAH . . . B 2 61.986 71.523 17.972 1 15.29 ? C3' SAH 401 A 1 
HETATM 13 O O3' SAH . . . B 2 60.717 70.899 17.9 1 12.49 ? O3' SAH 401 A 1 
HETATM 14 C C2' SAH . . . B 2 62.877 70.816 18.981 1 13.14 ? C2' SAH 401 A 1 
HETATM 15 O O2' SAH . . . B 2 62.199 70.202 20.064 1 12.96 ? O2' SAH 401 A 1 
HETATM 16 C C1' SAH . . . B 2 63.565 69.788 18.094 1 13.13 ? C1' SAH 401 A 1 
HETATM 17 N N9 SAH . . . B 2 64.778 69.245 18.734 1 13.52 ? N9 SAH 401 A 1 
HETATM 18 C C8 SAH . . . B 2 65.707 69.936 19.468 1 10.34 ? C8 SAH 401 A 1 
HETATM 19 N N7 SAH . . . B 2 66.645 69.058 19.883 1 9.09 ? N7 SAH 401 A 1 
HETATM 20 C C5 SAH . . . B 2 66.32 67.827 19.442 1 13.61 ? C5 SAH 401 A 1 
HETATM 21 C C6 SAH . . . B 2 66.923 66.581 19.596 1 13.71 ? C6 SAH 401 A 1 
HETATM 22 N N6 SAH . . . B 2 68.055 66.451 20.285 1 17.56 ? N6 SAH 401 A 1 
HETATM 23 N N1 SAH . . . B 2 66.346 65.479 19.021 1 16.65 ? N1 SAH 401 A 1 
HETATM 24 C C2 SAH . . . B 2 65.174 65.598 18.309 1 15.56 ? C2 SAH 401 A 1 
HETATM 25 N N3 SAH . . . B 2 64.582 66.837 18.174 1 13.58 ? N3 SAH 401 A 1 
HETATM 26 C C4 SAH . . . B 2 65.144 67.931 18.726 1 12.93 ? C4 SAH 401 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           26 
#