data_5U0Z # _model_server_result.job_id JjiHOqDgWqbtpXLTgyAuoQ _model_server_result.datetime_utc '2024-11-24 00:57:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u0z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5U0Z # _exptl.entry_id 5U0Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 317.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-[(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl](phenyl)acetic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.62 _cell.angle_gamma 90 _cell.entry_id 5U0Z _cell.length_a 94.081 _cell.length_b 85.33 _cell.length_c 84.186 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U0Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C13 H11 N5 O3 S' _chem_comp.formula_weight 317.323 _chem_comp.id 7PM _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-[(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl](phenyl)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 C12 7PM doub 1 n n O20 C10 7PM doub 2 n n C12 O21 7PM sing 3 n n C12 C13 7PM sing 4 n n C4 C2 7PM doub 5 n y C4 C6 7PM sing 6 n y C2 C1 7PM sing 7 n y C13 C6 7PM sing 8 n n C13 S22 7PM sing 9 n n C10 C7 7PM sing 10 n n C10 N17 7PM sing 11 n n C6 C5 7PM doub 12 n y C1 C3 7PM doub 13 n y N14 C7 7PM sing 14 n y N14 C9 7PM doub 15 n y C5 C3 7PM sing 16 n y C7 C8 7PM doub 17 n y N17 C11 7PM sing 18 n n C9 S22 7PM sing 19 n n C9 N16 7PM sing 20 n y C8 N16 7PM sing 21 n y C8 N15 7PM sing 22 n n C11 N18 7PM sing 23 n n C11 N15 7PM doub 24 n n C1 H1 7PM sing 25 n n C2 H2 7PM sing 26 n n C3 H3 7PM sing 27 n n C4 H4 7PM sing 28 n n C5 H5 7PM sing 29 n n C13 H6 7PM sing 30 n n N16 H8 7PM sing 31 n n N17 H9 7PM sing 32 n n N18 H10 7PM sing 33 n n N18 H11 7PM sing 34 n n O21 H12 7PM sing 35 n n # _atom_sites.entry_id 5U0Z _atom_sites.fract_transf_matrix[1][1] 0.010629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003999 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7PM A 1 301 2 7PM UNL . D 2 7PM B 1 301 1 7PM UNL . E 3 HOH A 1 401 67 HOH HOH . E 3 HOH A 2 402 29 HOH HOH . E 3 HOH A 3 403 139 HOH HOH . E 3 HOH A 4 404 104 HOH HOH . E 3 HOH A 5 405 109 HOH HOH . E 3 HOH A 6 406 92 HOH HOH . E 3 HOH A 7 407 127 HOH HOH . E 3 HOH A 8 408 60 HOH HOH . E 3 HOH A 9 409 10 HOH HOH . E 3 HOH A 10 410 73 HOH HOH . E 3 HOH A 11 411 94 HOH HOH . E 3 HOH A 12 412 3 HOH HOH . E 3 HOH A 13 413 56 HOH HOH . E 3 HOH A 14 414 9 HOH HOH . E 3 HOH A 15 415 45 HOH HOH . E 3 HOH A 16 416 24 HOH HOH . E 3 HOH A 17 417 143 HOH HOH . E 3 HOH A 18 418 30 HOH HOH . E 3 HOH A 19 419 130 HOH HOH . E 3 HOH A 20 420 79 HOH HOH . E 3 HOH A 21 421 4 HOH HOH . E 3 HOH A 22 422 61 HOH HOH . E 3 HOH A 23 423 25 HOH HOH . E 3 HOH A 24 424 18 HOH HOH . E 3 HOH A 25 425 99 HOH HOH . E 3 HOH A 26 426 14 HOH HOH . E 3 HOH A 27 427 7 HOH HOH . E 3 HOH A 28 428 16 HOH HOH . E 3 HOH A 29 429 90 HOH HOH . E 3 HOH A 30 430 20 HOH HOH . E 3 HOH A 31 431 113 HOH HOH . E 3 HOH A 32 432 62 HOH HOH . E 3 HOH A 33 433 141 HOH HOH . E 3 HOH A 34 434 78 HOH HOH . E 3 HOH A 35 435 150 HOH HOH . E 3 HOH A 36 436 145 HOH HOH . E 3 HOH A 37 437 50 HOH HOH . E 3 HOH A 38 438 75 HOH HOH . E 3 HOH A 39 439 8 HOH HOH . E 3 HOH A 40 440 1 HOH HOH . E 3 HOH A 41 441 81 HOH HOH . E 3 HOH A 42 442 69 HOH HOH . E 3 HOH A 43 443 132 HOH HOH . E 3 HOH A 44 444 114 HOH HOH . E 3 HOH A 45 445 84 HOH HOH . E 3 HOH A 46 446 2 HOH HOH . E 3 HOH A 47 447 17 HOH HOH . E 3 HOH A 48 448 65 HOH HOH . E 3 HOH A 49 449 126 HOH HOH . E 3 HOH A 50 450 112 HOH HOH . E 3 HOH A 51 451 58 HOH HOH . E 3 HOH A 52 452 91 HOH HOH . E 3 HOH A 53 453 122 HOH HOH . E 3 HOH A 54 454 52 HOH HOH . E 3 HOH A 55 455 6 HOH HOH . E 3 HOH A 56 456 82 HOH HOH . E 3 HOH A 57 457 142 HOH HOH . E 3 HOH A 58 458 27 HOH HOH . E 3 HOH A 59 459 135 HOH HOH . E 3 HOH A 60 460 66 HOH HOH . E 3 HOH A 61 461 11 HOH HOH . E 3 HOH A 62 462 5 HOH HOH . E 3 HOH A 63 463 148 HOH HOH . E 3 HOH A 64 464 57 HOH HOH . E 3 HOH A 65 465 12 HOH HOH . E 3 HOH A 66 466 89 HOH HOH . E 3 HOH A 67 467 131 HOH HOH . E 3 HOH A 68 468 22 HOH HOH . E 3 HOH A 69 469 15 HOH HOH . E 3 HOH A 70 470 23 HOH HOH . E 3 HOH A 71 471 86 HOH HOH . E 3 HOH A 72 472 26 HOH HOH . E 3 HOH A 73 473 93 HOH HOH . E 3 HOH A 74 474 13 HOH HOH . E 3 HOH A 75 475 105 HOH HOH . E 3 HOH A 76 476 85 HOH HOH . E 3 HOH A 77 477 125 HOH HOH . E 3 HOH A 78 478 103 HOH HOH . E 3 HOH A 79 479 153 HOH HOH . E 3 HOH A 80 480 76 HOH HOH . E 3 HOH A 81 481 87 HOH HOH . E 3 HOH A 82 482 128 HOH HOH . E 3 HOH A 83 483 88 HOH HOH . E 3 HOH A 84 484 140 HOH HOH . E 3 HOH A 85 485 77 HOH HOH . E 3 HOH A 86 486 21 HOH HOH . F 3 HOH B 1 401 134 HOH HOH . F 3 HOH B 2 402 146 HOH HOH . F 3 HOH B 3 403 54 HOH HOH . F 3 HOH B 4 404 40 HOH HOH . F 3 HOH B 5 405 37 HOH HOH . F 3 HOH B 6 406 108 HOH HOH . F 3 HOH B 7 407 68 HOH HOH . F 3 HOH B 8 408 49 HOH HOH . F 3 HOH B 9 409 111 HOH HOH . F 3 HOH B 10 410 147 HOH HOH . F 3 HOH B 11 411 48 HOH HOH . F 3 HOH B 12 412 149 HOH HOH . F 3 HOH B 13 413 72 HOH HOH . F 3 HOH B 14 414 32 HOH HOH . F 3 HOH B 15 415 124 HOH HOH . F 3 HOH B 16 416 96 HOH HOH . F 3 HOH B 17 417 144 HOH HOH . F 3 HOH B 18 418 138 HOH HOH . F 3 HOH B 19 419 47 HOH HOH . F 3 HOH B 20 420 53 HOH HOH . F 3 HOH B 21 421 97 HOH HOH . F 3 HOH B 22 422 116 HOH HOH . F 3 HOH B 23 423 41 HOH HOH . F 3 HOH B 24 424 31 HOH HOH . F 3 HOH B 25 425 117 HOH HOH . F 3 HOH B 26 426 102 HOH HOH . F 3 HOH B 27 427 74 HOH HOH . F 3 HOH B 28 428 71 HOH HOH . F 3 HOH B 29 429 133 HOH HOH . F 3 HOH B 30 430 83 HOH HOH . F 3 HOH B 31 431 59 HOH HOH . F 3 HOH B 32 432 115 HOH HOH . F 3 HOH B 33 433 35 HOH HOH . F 3 HOH B 34 434 100 HOH HOH . F 3 HOH B 35 435 19 HOH HOH . F 3 HOH B 36 436 119 HOH HOH . F 3 HOH B 37 437 80 HOH HOH . F 3 HOH B 38 438 107 HOH HOH . F 3 HOH B 39 439 34 HOH HOH . F 3 HOH B 40 440 106 HOH HOH . F 3 HOH B 41 441 63 HOH HOH . F 3 HOH B 42 442 110 HOH HOH . F 3 HOH B 43 443 46 HOH HOH . F 3 HOH B 44 444 44 HOH HOH . F 3 HOH B 45 445 36 HOH HOH . F 3 HOH B 46 446 98 HOH HOH . F 3 HOH B 47 447 95 HOH HOH . F 3 HOH B 48 448 43 HOH HOH . F 3 HOH B 49 449 55 HOH HOH . F 3 HOH B 50 450 121 HOH HOH . F 3 HOH B 51 451 28 HOH HOH . F 3 HOH B 52 452 38 HOH HOH . F 3 HOH B 53 453 151 HOH HOH . F 3 HOH B 54 454 42 HOH HOH . F 3 HOH B 55 455 51 HOH HOH . F 3 HOH B 56 456 64 HOH HOH . F 3 HOH B 57 457 129 HOH HOH . F 3 HOH B 58 458 33 HOH HOH . F 3 HOH B 59 459 39 HOH HOH . F 3 HOH B 60 460 70 HOH HOH . F 3 HOH B 61 461 137 HOH HOH . F 3 HOH B 62 462 123 HOH HOH . F 3 HOH B 63 463 152 HOH HOH . F 3 HOH B 64 464 136 HOH HOH . F 3 HOH B 65 465 101 HOH HOH . F 3 HOH B 66 466 118 HOH HOH . F 3 HOH B 67 467 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7PM . . . C 2 1.361 -2.768 23.985 1 71.15 ? C1 7PM 301 A 1 HETATM 2 C C2 7PM . . . C 2 1.84 -1.542 23.553 1 77.01 ? C2 7PM 301 A 1 HETATM 3 C C3 7PM . . . C 2 2.243 -3.763 24.355 1 61.07 ? C3 7PM 301 A 1 HETATM 4 C C4 7PM . . . C 2 3.199 -1.304 23.489 1 67.45 ? C4 7PM 301 A 1 HETATM 5 C C5 7PM . . . C 2 3.603 -3.519 24.289 1 60.86 ? C5 7PM 301 A 1 HETATM 6 C C6 7PM . . . C 2 4.093 -2.291 23.86 1 57.34 ? C6 7PM 301 A 1 HETATM 7 C C7 7PM . . . C 2 9.29 0.171 24.557 1 29.42 ? C7 7PM 301 A 1 HETATM 8 C C8 7PM . . . C 2 9.612 -0.177 25.835 1 26.8 ? C8 7PM 301 A 1 HETATM 9 C C9 7PM . . . C 2 7.797 -1.19 25.179 1 36.86 ? C9 7PM 301 A 1 HETATM 10 C C10 7PM . . . C 2 10.127 1.104 23.848 1 29.99 ? C10 7PM 301 A 1 HETATM 11 C C11 7PM . . . C 2 11.405 1.071 25.954 1 30.81 ? C11 7PM 301 A 1 HETATM 12 C C12 7PM . . . C 2 6.148 -2.998 22.751 1 41.71 ? C12 7PM 301 A 1 HETATM 13 C C13 7PM . . . C 2 5.568 -2.011 23.78 1 41.81 ? C13 7PM 301 A 1 HETATM 14 N N14 7PM . . . C 2 8.158 -0.462 24.131 1 31.97 ? N14 7PM 301 A 1 HETATM 15 N N15 7PM . . . C 2 10.634 0.227 26.583 1 31.81 ? N15 7PM 301 A 1 HETATM 16 N N16 7PM . . . C 2 8.657 -1.054 26.228 1 31.34 ? N16 7PM 301 A 1 HETATM 17 N N17 7PM . . . C 2 11.189 1.505 24.642 1 28.81 ? N17 7PM 301 A 1 HETATM 18 N N18 7PM . . . C 2 12.508 1.623 26.538 1 27 ? N18 7PM 301 A 1 HETATM 19 O O19 7PM . . . C 2 5.76 -2.761 21.58 1 45.49 ? O19 7PM 301 A 1 HETATM 20 O O20 7PM . . . C 2 9.936 1.496 22.708 1 24.36 ? O20 7PM 301 A 1 HETATM 21 O O21 7PM . . . C 2 6.905 -3.939 23.129 1 36.31 ? O21 7PM 301 A 1 HETATM 22 S S22 7PM . . . C 2 6.417 -2.263 25.367 1 35.79 ? S22 7PM 301 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #