data_5U0Z
#
_model_server_result.job_id            jotSqgMMzZk1eTXcDV4HRg 
_model_server_result.datetime_utc      '2024-11-27 18:14:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u0z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    5U0Z 
#
_exptl.entry_id    5U0Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              317.323 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-[(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl](phenyl)acetic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.62 
_cell.angle_gamma         90 
_cell.entry_id            5U0Z 
_cell.length_a            94.081 
_cell.length_b            85.33 
_cell.length_c            84.186 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5U0Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C13 H11 N5 O3 S' 
_chem_comp.formula_weight    317.323 
_chem_comp.id                7PM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-[(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl](phenyl)acetic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O19 C12 7PM doub 1 n n 
O20 C10 7PM doub 2 n n 
C12 O21 7PM sing 3 n n 
C12 C13 7PM sing 4 n n 
C4 C2 7PM doub 5 n y 
C4 C6 7PM sing 6 n y 
C2 C1 7PM sing 7 n y 
C13 C6 7PM sing 8 n n 
C13 S22 7PM sing 9 n n 
C10 C7 7PM sing 10 n n 
C10 N17 7PM sing 11 n n 
C6 C5 7PM doub 12 n y 
C1 C3 7PM doub 13 n y 
N14 C7 7PM sing 14 n y 
N14 C9 7PM doub 15 n y 
C5 C3 7PM sing 16 n y 
C7 C8 7PM doub 17 n y 
N17 C11 7PM sing 18 n n 
C9 S22 7PM sing 19 n n 
C9 N16 7PM sing 20 n y 
C8 N16 7PM sing 21 n y 
C8 N15 7PM sing 22 n n 
C11 N18 7PM sing 23 n n 
C11 N15 7PM doub 24 n n 
C1 H1 7PM sing 25 n n 
C2 H2 7PM sing 26 n n 
C3 H3 7PM sing 27 n n 
C4 H4 7PM sing 28 n n 
C5 H5 7PM sing 29 n n 
C13 H6 7PM sing 30 n n 
N16 H8 7PM sing 31 n n 
N17 H9 7PM sing 32 n n 
N18 H10 7PM sing 33 n n 
N18 H11 7PM sing 34 n n 
O21 H12 7PM sing 35 n n 
#
_atom_sites.entry_id                     5U0Z 
_atom_sites.fract_transf_matrix[1][1]    0.010629 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003999 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011719 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012691 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 7PM A 1 301 2 7PM UNL . 
D 2 7PM B 1 301 1 7PM UNL . 
E 3 HOH A 1 401 67 HOH HOH . 
E 3 HOH A 2 402 29 HOH HOH . 
E 3 HOH A 3 403 139 HOH HOH . 
E 3 HOH A 4 404 104 HOH HOH . 
E 3 HOH A 5 405 109 HOH HOH . 
E 3 HOH A 6 406 92 HOH HOH . 
E 3 HOH A 7 407 127 HOH HOH . 
E 3 HOH A 8 408 60 HOH HOH . 
E 3 HOH A 9 409 10 HOH HOH . 
E 3 HOH A 10 410 73 HOH HOH . 
E 3 HOH A 11 411 94 HOH HOH . 
E 3 HOH A 12 412 3 HOH HOH . 
E 3 HOH A 13 413 56 HOH HOH . 
E 3 HOH A 14 414 9 HOH HOH . 
E 3 HOH A 15 415 45 HOH HOH . 
E 3 HOH A 16 416 24 HOH HOH . 
E 3 HOH A 17 417 143 HOH HOH . 
E 3 HOH A 18 418 30 HOH HOH . 
E 3 HOH A 19 419 130 HOH HOH . 
E 3 HOH A 20 420 79 HOH HOH . 
E 3 HOH A 21 421 4 HOH HOH . 
E 3 HOH A 22 422 61 HOH HOH . 
E 3 HOH A 23 423 25 HOH HOH . 
E 3 HOH A 24 424 18 HOH HOH . 
E 3 HOH A 25 425 99 HOH HOH . 
E 3 HOH A 26 426 14 HOH HOH . 
E 3 HOH A 27 427 7 HOH HOH . 
E 3 HOH A 28 428 16 HOH HOH . 
E 3 HOH A 29 429 90 HOH HOH . 
E 3 HOH A 30 430 20 HOH HOH . 
E 3 HOH A 31 431 113 HOH HOH . 
E 3 HOH A 32 432 62 HOH HOH . 
E 3 HOH A 33 433 141 HOH HOH . 
E 3 HOH A 34 434 78 HOH HOH . 
E 3 HOH A 35 435 150 HOH HOH . 
E 3 HOH A 36 436 145 HOH HOH . 
E 3 HOH A 37 437 50 HOH HOH . 
E 3 HOH A 38 438 75 HOH HOH . 
E 3 HOH A 39 439 8 HOH HOH . 
E 3 HOH A 40 440 1 HOH HOH . 
E 3 HOH A 41 441 81 HOH HOH . 
E 3 HOH A 42 442 69 HOH HOH . 
E 3 HOH A 43 443 132 HOH HOH . 
E 3 HOH A 44 444 114 HOH HOH . 
E 3 HOH A 45 445 84 HOH HOH . 
E 3 HOH A 46 446 2 HOH HOH . 
E 3 HOH A 47 447 17 HOH HOH . 
E 3 HOH A 48 448 65 HOH HOH . 
E 3 HOH A 49 449 126 HOH HOH . 
E 3 HOH A 50 450 112 HOH HOH . 
E 3 HOH A 51 451 58 HOH HOH . 
E 3 HOH A 52 452 91 HOH HOH . 
E 3 HOH A 53 453 122 HOH HOH . 
E 3 HOH A 54 454 52 HOH HOH . 
E 3 HOH A 55 455 6 HOH HOH . 
E 3 HOH A 56 456 82 HOH HOH . 
E 3 HOH A 57 457 142 HOH HOH . 
E 3 HOH A 58 458 27 HOH HOH . 
E 3 HOH A 59 459 135 HOH HOH . 
E 3 HOH A 60 460 66 HOH HOH . 
E 3 HOH A 61 461 11 HOH HOH . 
E 3 HOH A 62 462 5 HOH HOH . 
E 3 HOH A 63 463 148 HOH HOH . 
E 3 HOH A 64 464 57 HOH HOH . 
E 3 HOH A 65 465 12 HOH HOH . 
E 3 HOH A 66 466 89 HOH HOH . 
E 3 HOH A 67 467 131 HOH HOH . 
E 3 HOH A 68 468 22 HOH HOH . 
E 3 HOH A 69 469 15 HOH HOH . 
E 3 HOH A 70 470 23 HOH HOH . 
E 3 HOH A 71 471 86 HOH HOH . 
E 3 HOH A 72 472 26 HOH HOH . 
E 3 HOH A 73 473 93 HOH HOH . 
E 3 HOH A 74 474 13 HOH HOH . 
E 3 HOH A 75 475 105 HOH HOH . 
E 3 HOH A 76 476 85 HOH HOH . 
E 3 HOH A 77 477 125 HOH HOH . 
E 3 HOH A 78 478 103 HOH HOH . 
E 3 HOH A 79 479 153 HOH HOH . 
E 3 HOH A 80 480 76 HOH HOH . 
E 3 HOH A 81 481 87 HOH HOH . 
E 3 HOH A 82 482 128 HOH HOH . 
E 3 HOH A 83 483 88 HOH HOH . 
E 3 HOH A 84 484 140 HOH HOH . 
E 3 HOH A 85 485 77 HOH HOH . 
E 3 HOH A 86 486 21 HOH HOH . 
F 3 HOH B 1 401 134 HOH HOH . 
F 3 HOH B 2 402 146 HOH HOH . 
F 3 HOH B 3 403 54 HOH HOH . 
F 3 HOH B 4 404 40 HOH HOH . 
F 3 HOH B 5 405 37 HOH HOH . 
F 3 HOH B 6 406 108 HOH HOH . 
F 3 HOH B 7 407 68 HOH HOH . 
F 3 HOH B 8 408 49 HOH HOH . 
F 3 HOH B 9 409 111 HOH HOH . 
F 3 HOH B 10 410 147 HOH HOH . 
F 3 HOH B 11 411 48 HOH HOH . 
F 3 HOH B 12 412 149 HOH HOH . 
F 3 HOH B 13 413 72 HOH HOH . 
F 3 HOH B 14 414 32 HOH HOH . 
F 3 HOH B 15 415 124 HOH HOH . 
F 3 HOH B 16 416 96 HOH HOH . 
F 3 HOH B 17 417 144 HOH HOH . 
F 3 HOH B 18 418 138 HOH HOH . 
F 3 HOH B 19 419 47 HOH HOH . 
F 3 HOH B 20 420 53 HOH HOH . 
F 3 HOH B 21 421 97 HOH HOH . 
F 3 HOH B 22 422 116 HOH HOH . 
F 3 HOH B 23 423 41 HOH HOH . 
F 3 HOH B 24 424 31 HOH HOH . 
F 3 HOH B 25 425 117 HOH HOH . 
F 3 HOH B 26 426 102 HOH HOH . 
F 3 HOH B 27 427 74 HOH HOH . 
F 3 HOH B 28 428 71 HOH HOH . 
F 3 HOH B 29 429 133 HOH HOH . 
F 3 HOH B 30 430 83 HOH HOH . 
F 3 HOH B 31 431 59 HOH HOH . 
F 3 HOH B 32 432 115 HOH HOH . 
F 3 HOH B 33 433 35 HOH HOH . 
F 3 HOH B 34 434 100 HOH HOH . 
F 3 HOH B 35 435 19 HOH HOH . 
F 3 HOH B 36 436 119 HOH HOH . 
F 3 HOH B 37 437 80 HOH HOH . 
F 3 HOH B 38 438 107 HOH HOH . 
F 3 HOH B 39 439 34 HOH HOH . 
F 3 HOH B 40 440 106 HOH HOH . 
F 3 HOH B 41 441 63 HOH HOH . 
F 3 HOH B 42 442 110 HOH HOH . 
F 3 HOH B 43 443 46 HOH HOH . 
F 3 HOH B 44 444 44 HOH HOH . 
F 3 HOH B 45 445 36 HOH HOH . 
F 3 HOH B 46 446 98 HOH HOH . 
F 3 HOH B 47 447 95 HOH HOH . 
F 3 HOH B 48 448 43 HOH HOH . 
F 3 HOH B 49 449 55 HOH HOH . 
F 3 HOH B 50 450 121 HOH HOH . 
F 3 HOH B 51 451 28 HOH HOH . 
F 3 HOH B 52 452 38 HOH HOH . 
F 3 HOH B 53 453 151 HOH HOH . 
F 3 HOH B 54 454 42 HOH HOH . 
F 3 HOH B 55 455 51 HOH HOH . 
F 3 HOH B 56 456 64 HOH HOH . 
F 3 HOH B 57 457 129 HOH HOH . 
F 3 HOH B 58 458 33 HOH HOH . 
F 3 HOH B 59 459 39 HOH HOH . 
F 3 HOH B 60 460 70 HOH HOH . 
F 3 HOH B 61 461 137 HOH HOH . 
F 3 HOH B 62 462 123 HOH HOH . 
F 3 HOH B 63 463 152 HOH HOH . 
F 3 HOH B 64 464 136 HOH HOH . 
F 3 HOH B 65 465 101 HOH HOH . 
F 3 HOH B 66 466 118 HOH HOH . 
F 3 HOH B 67 467 120 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 7PM . . . D 2 29.1 -15.276 -8.256 1 36.63 ? C1 7PM 301 B 1 
HETATM 2 C C2 7PM . . . D 2 29.561 -13.975 -8.216 1 43.37 ? C2 7PM 301 B 1 
HETATM 3 C C3 7PM . . . D 2 27.75 -15.522 -8.381 1 43.52 ? C3 7PM 301 B 1 
HETATM 4 C C4 7PM . . . D 2 28.679 -12.916 -8.306 1 36.99 ? C4 7PM 301 B 1 
HETATM 5 C C5 7PM . . . D 2 26.863 -14.466 -8.47 1 42.83 ? C5 7PM 301 B 1 
HETATM 6 C C6 7PM . . . D 2 27.326 -13.158 -8.436 1 38.87 ? C6 7PM 301 B 1 
HETATM 7 C C7 7PM . . . D 2 25.559 -7.895 -9.812 1 27.97 ? C7 7PM 301 B 1 
HETATM 8 C C8 7PM . . . D 2 25.081 -8.003 -11.082 1 25.41 ? C8 7PM 301 B 1 
HETATM 9 C C9 7PM . . . D 2 25.565 -9.964 -10.243 1 30.97 ? C9 7PM 301 B 1 
HETATM 10 C C10 7PM . . . D 2 25.68 -6.607 -9.209 1 25.87 ? C10 7PM 301 B 1 
HETATM 11 C C11 7PM . . . D 2 24.789 -5.858 -11.37 1 26.53 ? C11 7PM 301 B 1 
HETATM 12 C C12 7PM . . . D 2 25.215 -12.193 -7.586 1 40.27 ? C12 7PM 301 B 1 
HETATM 13 C C13 7PM . . . D 2 26.396 -11.978 -8.537 1 43.34 ? C13 7PM 301 B 1 
HETATM 14 N N14 7PM . . . D 2 25.861 -9.116 -9.28 1 30.86 ? N14 7PM 301 B 1 
HETATM 15 N N15 7PM . . . D 2 24.685 -7.034 -11.912 1 26.98 ? N15 7PM 301 B 1 
HETATM 16 N N16 7PM . . . D 2 25.087 -9.331 -11.357 1 25.15 ? N16 7PM 301 B 1 
HETATM 17 N N17 7PM . . . D 2 25.253 -5.647 -10.084 1 20.6 ? N17 7PM 301 B 1 
HETATM 18 N N18 7PM . . . D 2 24.455 -4.722 -12.053 1 25.29 ? N18 7PM 301 B 1 
HETATM 19 O O19 7PM . . . D 2 24.053 -12.241 -8.081 1 36.11 ? O19 7PM 301 B 1 
HETATM 20 O O20 7PM . . . D 2 26.091 -6.383 -8.076 1 26.87 ? O20 7PM 301 B 1 
HETATM 21 O O21 7PM . . . D 2 25.572 -12.322 -6.379 1 46 ? O21 7PM 301 B 1 
HETATM 22 S S22 7PM . . . D 2 25.734 -11.702 -10.211 1 34.83 ? S22 7PM 301 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           22 
#