data_5U11 # _model_server_result.job_id 3D19U45KbsfNbLsMAZQDLA _model_server_result.datetime_utc '2024-11-25 03:56:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u11 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5U11 # _exptl.entry_id 5U11 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.269 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]-N-methylacetamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.52 _cell.angle_gamma 90 _cell.entry_id 5U11 _cell.length_a 94.782 _cell.length_b 84.599 _cell.length_c 83.963 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U11 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C8 H10 N6 O2 S' _chem_comp.formula_weight 254.269 _chem_comp.id 7PS _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]-N-methylacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 N14 7PS sing 1 n n N14 C6 7PS sing 2 n n O16 C3 7PS doub 3 n n C6 O15 7PS doub 4 n n C6 C8 7PS sing 5 n n C8 S17 7PS sing 6 n n C3 N11 7PS sing 7 n n C3 C1 7PS sing 8 n n N12 C1 7PS sing 9 n y N12 C5 7PS doub 10 n y N11 C4 7PS sing 11 n n C1 C2 7PS doub 12 n y C5 S17 7PS sing 13 n n C5 N10 7PS sing 14 n y C4 N13 7PS sing 15 n n C4 N9 7PS doub 16 n n C2 N10 7PS sing 17 n y C2 N9 7PS sing 18 n n C7 H1 7PS sing 19 n n C7 H2 7PS sing 20 n n C7 H3 7PS sing 21 n n C8 H4 7PS sing 22 n n C8 H5 7PS sing 23 n n N10 H6 7PS sing 24 n n N11 H7 7PS sing 25 n n N13 H9 7PS sing 26 n n N13 H10 7PS sing 27 n n N14 H11 7PS sing 28 n n # _atom_sites.entry_id 5U11 _atom_sites.fract_transf_matrix[1][1] 0.010551 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003949 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7PS A 1 301 1 7PS UNL . D 2 7PS B 1 301 2 7PS UNL . E 3 HOH A 1 401 55 HOH HOH . E 3 HOH A 2 402 112 HOH HOH . E 3 HOH A 3 403 57 HOH HOH . E 3 HOH A 4 404 151 HOH HOH . E 3 HOH A 5 405 118 HOH HOH . E 3 HOH A 6 406 149 HOH HOH . E 3 HOH A 7 407 75 HOH HOH . E 3 HOH A 8 408 123 HOH HOH . E 3 HOH A 9 409 58 HOH HOH . E 3 HOH A 10 410 96 HOH HOH . E 3 HOH A 11 411 49 HOH HOH . E 3 HOH A 12 412 3 HOH HOH . E 3 HOH A 13 413 44 HOH HOH . E 3 HOH A 14 414 120 HOH HOH . E 3 HOH A 15 415 152 HOH HOH . E 3 HOH A 16 416 14 HOH HOH . E 3 HOH A 17 417 103 HOH HOH . E 3 HOH A 18 418 80 HOH HOH . E 3 HOH A 19 419 13 HOH HOH . E 3 HOH A 20 420 141 HOH HOH . E 3 HOH A 21 421 16 HOH HOH . E 3 HOH A 22 422 117 HOH HOH . E 3 HOH A 23 423 68 HOH HOH . E 3 HOH A 24 424 139 HOH HOH . E 3 HOH A 25 425 147 HOH HOH . E 3 HOH A 26 426 122 HOH HOH . E 3 HOH A 27 427 48 HOH HOH . E 3 HOH A 28 428 7 HOH HOH . E 3 HOH A 29 429 111 HOH HOH . E 3 HOH A 30 430 45 HOH HOH . E 3 HOH A 31 431 79 HOH HOH . E 3 HOH A 32 432 113 HOH HOH . E 3 HOH A 33 433 66 HOH HOH . E 3 HOH A 34 434 35 HOH HOH . E 3 HOH A 35 435 70 HOH HOH . E 3 HOH A 36 436 12 HOH HOH . E 3 HOH A 37 437 133 HOH HOH . E 3 HOH A 38 438 24 HOH HOH . E 3 HOH A 39 439 114 HOH HOH . E 3 HOH A 40 440 29 HOH HOH . E 3 HOH A 41 441 137 HOH HOH . E 3 HOH A 42 442 76 HOH HOH . E 3 HOH A 43 443 25 HOH HOH . E 3 HOH A 44 444 40 HOH HOH . E 3 HOH A 45 445 156 HOH HOH . E 3 HOH A 46 446 82 HOH HOH . E 3 HOH A 47 447 90 HOH HOH . E 3 HOH A 48 448 26 HOH HOH . E 3 HOH A 49 449 65 HOH HOH . E 3 HOH A 50 450 94 HOH HOH . E 3 HOH A 51 451 136 HOH HOH . E 3 HOH A 52 452 89 HOH HOH . E 3 HOH A 53 453 21 HOH HOH . E 3 HOH A 54 454 43 HOH HOH . E 3 HOH A 55 455 99 HOH HOH . E 3 HOH A 56 456 106 HOH HOH . E 3 HOH A 57 457 128 HOH HOH . E 3 HOH A 58 458 2 HOH HOH . E 3 HOH A 59 459 134 HOH HOH . E 3 HOH A 60 460 100 HOH HOH . E 3 HOH A 61 461 11 HOH HOH . E 3 HOH A 62 462 129 HOH HOH . E 3 HOH A 63 463 20 HOH HOH . E 3 HOH A 64 464 50 HOH HOH . E 3 HOH A 65 465 154 HOH HOH . E 3 HOH A 66 466 85 HOH HOH . E 3 HOH A 67 467 126 HOH HOH . E 3 HOH A 68 468 87 HOH HOH . E 3 HOH A 69 469 30 HOH HOH . E 3 HOH A 70 470 104 HOH HOH . E 3 HOH A 71 471 8 HOH HOH . E 3 HOH A 72 472 140 HOH HOH . E 3 HOH A 73 473 108 HOH HOH . E 3 HOH A 74 474 53 HOH HOH . E 3 HOH A 75 475 34 HOH HOH . E 3 HOH A 76 476 138 HOH HOH . E 3 HOH A 77 477 84 HOH HOH . E 3 HOH A 78 478 157 HOH HOH . E 3 HOH A 79 479 64 HOH HOH . E 3 HOH A 80 480 127 HOH HOH . E 3 HOH A 81 481 153 HOH HOH . E 3 HOH A 82 482 67 HOH HOH . E 3 HOH A 83 483 83 HOH HOH . E 3 HOH A 84 484 119 HOH HOH . E 3 HOH A 85 485 54 HOH HOH . E 3 HOH A 86 486 6 HOH HOH . E 3 HOH A 87 487 19 HOH HOH . F 3 HOH B 1 401 150 HOH HOH . F 3 HOH B 2 402 62 HOH HOH . F 3 HOH B 3 403 59 HOH HOH . F 3 HOH B 4 404 71 HOH HOH . F 3 HOH B 5 405 121 HOH HOH . F 3 HOH B 6 406 77 HOH HOH . F 3 HOH B 7 407 5 HOH HOH . F 3 HOH B 8 408 51 HOH HOH . F 3 HOH B 9 409 37 HOH HOH . F 3 HOH B 10 410 143 HOH HOH . F 3 HOH B 11 411 115 HOH HOH . F 3 HOH B 12 412 116 HOH HOH . F 3 HOH B 13 413 27 HOH HOH . F 3 HOH B 14 414 124 HOH HOH . F 3 HOH B 15 415 42 HOH HOH . F 3 HOH B 16 416 32 HOH HOH . F 3 HOH B 17 417 110 HOH HOH . F 3 HOH B 18 418 88 HOH HOH . F 3 HOH B 19 419 144 HOH HOH . F 3 HOH B 20 420 1 HOH HOH . F 3 HOH B 21 421 15 HOH HOH . F 3 HOH B 22 422 17 HOH HOH . F 3 HOH B 23 423 60 HOH HOH . F 3 HOH B 24 424 4 HOH HOH . F 3 HOH B 25 425 98 HOH HOH . F 3 HOH B 26 426 52 HOH HOH . F 3 HOH B 27 427 81 HOH HOH . F 3 HOH B 28 428 148 HOH HOH . F 3 HOH B 29 429 22 HOH HOH . F 3 HOH B 30 430 10 HOH HOH . F 3 HOH B 31 431 47 HOH HOH . F 3 HOH B 32 432 107 HOH HOH . F 3 HOH B 33 433 23 HOH HOH . F 3 HOH B 34 434 73 HOH HOH . F 3 HOH B 35 435 91 HOH HOH . F 3 HOH B 36 436 46 HOH HOH . F 3 HOH B 37 437 86 HOH HOH . F 3 HOH B 38 438 97 HOH HOH . F 3 HOH B 39 439 125 HOH HOH . F 3 HOH B 40 440 39 HOH HOH . F 3 HOH B 41 441 18 HOH HOH . F 3 HOH B 42 442 95 HOH HOH . F 3 HOH B 43 443 33 HOH HOH . F 3 HOH B 44 444 31 HOH HOH . F 3 HOH B 45 445 28 HOH HOH . F 3 HOH B 46 446 92 HOH HOH . F 3 HOH B 47 447 9 HOH HOH . F 3 HOH B 48 448 146 HOH HOH . F 3 HOH B 49 449 63 HOH HOH . F 3 HOH B 50 450 38 HOH HOH . F 3 HOH B 51 451 130 HOH HOH . F 3 HOH B 52 452 36 HOH HOH . F 3 HOH B 53 453 145 HOH HOH . F 3 HOH B 54 454 135 HOH HOH . F 3 HOH B 55 455 155 HOH HOH . F 3 HOH B 56 456 61 HOH HOH . F 3 HOH B 57 457 72 HOH HOH . F 3 HOH B 58 458 105 HOH HOH . F 3 HOH B 59 459 132 HOH HOH . F 3 HOH B 60 460 74 HOH HOH . F 3 HOH B 61 461 93 HOH HOH . F 3 HOH B 62 462 101 HOH HOH . F 3 HOH B 63 463 78 HOH HOH . F 3 HOH B 64 464 142 HOH HOH . F 3 HOH B 65 465 102 HOH HOH . F 3 HOH B 66 466 41 HOH HOH . F 3 HOH B 67 467 131 HOH HOH . F 3 HOH B 68 468 56 HOH HOH . F 3 HOH B 69 469 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7PS . . . C 2 9.511 0.578 24.448 1 28.8 ? C1 7PS 301 A 1 HETATM 2 C C2 7PS . . . C 2 9.828 0.163 25.724 1 29.23 ? C2 7PS 301 A 1 HETATM 3 C C3 7PS . . . C 2 10.304 1.491 23.795 1 27.04 ? C3 7PS 301 A 1 HETATM 4 C C4 7PS . . . C 2 11.633 1.497 25.687 1 30.3 ? C4 7PS 301 A 1 HETATM 5 C C5 7PS . . . C 2 8.058 -0.879 25.202 1 28.39 ? C5 7PS 301 A 1 HETATM 6 C C6 7PS . . . C 2 6.246 -2.803 22.603 1 41.03 ? C6 7PS 301 A 1 HETATM 7 C C7 7PS . . . C 2 5.063 -3.824 20.65 1 44.16 ? C7 7PS 301 A 1 HETATM 8 C C8 7PS . . . C 2 5.793 -1.794 23.656 1 33.01 ? C8 7PS 301 A 1 HETATM 9 N N9 7PS . . . C 2 10.905 0.609 26.383 1 26.2 ? N9 7PS 301 A 1 HETATM 10 N N10 7PS . . . C 2 8.914 -0.739 26.191 1 31.69 ? N10 7PS 301 A 1 HETATM 11 N N11 7PS . . . C 2 11.381 1.947 24.442 1 29.47 ? N11 7PS 301 A 1 HETATM 12 N N12 7PS . . . C 2 8.374 -0.097 24.127 1 26.72 ? N12 7PS 301 A 1 HETATM 13 N N13 7PS . . . C 2 12.754 2.004 26.332 1 28.67 ? N13 7PS 301 A 1 HETATM 14 N N14 7PS . . . C 2 5.43 -2.7 21.478 1 41.9 ? N14 7PS 301 A 1 HETATM 15 O O15 7PS . . . C 2 7.188 -3.589 22.716 1 35.63 ? O15 7PS 301 A 1 HETATM 16 O O16 7PS . . . C 2 10.038 1.941 22.524 1 25.2 ? O16 7PS 301 A 1 HETATM 17 S S17 7PS . . . C 2 6.666 -1.934 25.241 1 38.35 ? S17 7PS 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #