data_5U12 # _model_server_result.job_id Np_j4dg-xlGI8pZVU5252w _model_server_result.datetime_utc '2024-11-15 05:33:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u12 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5U12 # _exptl.entry_id 5U12 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 291.304 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-azanyl-8-[(2-fluorophenyl)methylsulfanyl]-1,9-dihydropurin-6-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.87 _cell.angle_gamma 90 _cell.entry_id 5U12 _cell.length_a 95.887 _cell.length_b 84.546 _cell.length_c 84.145 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U12 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C12 H10 F N5 O S' _chem_comp.formula_weight 291.304 _chem_comp.id 5RU _chem_comp.mon_nstd_flag . _chem_comp.name 2-azanyl-8-[(2-fluorophenyl)methylsulfanyl]-1,9-dihydropurin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N19 C18 5RU sing 1 n n N17 C18 5RU doub 2 n n N17 C4 5RU sing 3 n n C18 N20 5RU sing 4 n n C4 N5 5RU sing 5 n y C4 C3 5RU doub 6 n y N5 C6 5RU sing 7 n y N20 C2 5RU sing 8 n n C3 C2 5RU sing 9 n n C3 N16 5RU sing 10 n y C2 O1 5RU doub 11 n n C6 N16 5RU doub 12 n y C6 S7 5RU sing 13 n n S7 C8 5RU sing 14 n n C12 C11 5RU doub 15 n y C12 C13 5RU sing 16 n y C11 C10 5RU sing 17 n y C13 C14 5RU doub 18 n y C10 C9 5RU doub 19 n y C14 C9 5RU sing 20 n y C14 F15 5RU sing 21 n n C9 C8 5RU sing 22 n n C11 H1 5RU sing 23 n n C12 H2 5RU sing 24 n n C10 H3 5RU sing 25 n n C13 H4 5RU sing 26 n n C8 H5 5RU sing 27 n n C8 H6 5RU sing 28 n n N5 H7 5RU sing 29 n n N20 H8 5RU sing 30 n n N19 H10 5RU sing 31 n n N19 H11 5RU sing 32 n n # _atom_sites.entry_id 5U12 _atom_sites.fract_transf_matrix[1][1] 0.010429 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003769 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012636 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5RU A 1 301 301 5RU 5RU . D 2 5RU B 1 301 301 5RU 5RU . E 3 HOH A 1 401 401 HOH HOH . E 3 HOH A 2 402 402 HOH HOH . E 3 HOH A 3 403 403 HOH HOH . E 3 HOH A 4 404 404 HOH HOH . E 3 HOH A 5 405 405 HOH HOH . E 3 HOH A 6 406 406 HOH HOH . E 3 HOH A 7 407 407 HOH HOH . E 3 HOH A 8 408 408 HOH HOH . E 3 HOH A 9 409 409 HOH HOH . E 3 HOH A 10 410 410 HOH HOH . E 3 HOH A 11 411 411 HOH HOH . E 3 HOH A 12 412 412 HOH HOH . E 3 HOH A 13 413 413 HOH HOH . E 3 HOH A 14 414 414 HOH HOH . E 3 HOH A 15 415 415 HOH HOH . E 3 HOH A 16 416 416 HOH HOH . E 3 HOH A 17 417 417 HOH HOH . E 3 HOH A 18 418 418 HOH HOH . E 3 HOH A 19 419 419 HOH HOH . E 3 HOH A 20 420 420 HOH HOH . E 3 HOH A 21 421 421 HOH HOH . E 3 HOH A 22 422 422 HOH HOH . E 3 HOH A 23 423 423 HOH HOH . E 3 HOH A 24 424 424 HOH HOH . E 3 HOH A 25 425 425 HOH HOH . E 3 HOH A 26 426 426 HOH HOH . E 3 HOH A 27 427 427 HOH HOH . E 3 HOH A 28 428 428 HOH HOH . E 3 HOH A 29 429 429 HOH HOH . E 3 HOH A 30 430 430 HOH HOH . E 3 HOH A 31 431 431 HOH HOH . E 3 HOH A 32 432 432 HOH HOH . E 3 HOH A 33 433 433 HOH HOH . E 3 HOH A 34 434 434 HOH HOH . E 3 HOH A 35 435 435 HOH HOH . E 3 HOH A 36 436 436 HOH HOH . E 3 HOH A 37 437 437 HOH HOH . E 3 HOH A 38 438 438 HOH HOH . E 3 HOH A 39 439 439 HOH HOH . E 3 HOH A 40 440 440 HOH HOH . E 3 HOH A 41 441 441 HOH HOH . E 3 HOH A 42 442 442 HOH HOH . E 3 HOH A 43 443 443 HOH HOH . E 3 HOH A 44 444 444 HOH HOH . E 3 HOH A 45 445 445 HOH HOH . E 3 HOH A 46 446 446 HOH HOH . E 3 HOH A 47 447 447 HOH HOH . E 3 HOH A 48 448 448 HOH HOH . E 3 HOH A 49 449 449 HOH HOH . E 3 HOH A 50 450 450 HOH HOH . E 3 HOH A 51 451 451 HOH HOH . E 3 HOH A 52 452 452 HOH HOH . E 3 HOH A 53 453 453 HOH HOH . E 3 HOH A 54 454 454 HOH HOH . E 3 HOH A 55 455 455 HOH HOH . E 3 HOH A 56 456 456 HOH HOH . E 3 HOH A 57 457 457 HOH HOH . E 3 HOH A 58 458 458 HOH HOH . E 3 HOH A 59 459 459 HOH HOH . E 3 HOH A 60 460 460 HOH HOH . E 3 HOH A 61 461 461 HOH HOH . E 3 HOH A 62 462 462 HOH HOH . E 3 HOH A 63 463 463 HOH HOH . E 3 HOH A 64 464 464 HOH HOH . E 3 HOH A 65 465 465 HOH HOH . E 3 HOH A 66 466 466 HOH HOH . E 3 HOH A 67 467 467 HOH HOH . E 3 HOH A 68 468 468 HOH HOH . E 3 HOH A 69 469 469 HOH HOH . E 3 HOH A 70 470 470 HOH HOH . E 3 HOH A 71 471 471 HOH HOH . E 3 HOH A 72 472 472 HOH HOH . E 3 HOH A 73 473 473 HOH HOH . E 3 HOH A 74 474 474 HOH HOH . E 3 HOH A 75 475 475 HOH HOH . E 3 HOH A 76 476 476 HOH HOH . E 3 HOH A 77 477 477 HOH HOH . E 3 HOH A 78 478 478 HOH HOH . E 3 HOH A 79 479 479 HOH HOH . E 3 HOH A 80 480 480 HOH HOH . E 3 HOH A 81 481 481 HOH HOH . E 3 HOH A 82 482 482 HOH HOH . E 3 HOH A 83 483 483 HOH HOH . E 3 HOH A 84 484 484 HOH HOH . E 3 HOH A 85 485 485 HOH HOH . E 3 HOH A 86 486 486 HOH HOH . E 3 HOH A 87 487 487 HOH HOH . E 3 HOH A 88 488 488 HOH HOH . E 3 HOH A 89 489 489 HOH HOH . E 3 HOH A 90 490 490 HOH HOH . E 3 HOH A 91 491 491 HOH HOH . E 3 HOH A 92 492 492 HOH HOH . E 3 HOH A 93 493 493 HOH HOH . E 3 HOH A 94 494 494 HOH HOH . E 3 HOH A 95 495 495 HOH HOH . E 3 HOH A 96 496 496 HOH HOH . E 3 HOH A 97 497 497 HOH HOH . E 3 HOH A 98 498 498 HOH HOH . E 3 HOH A 99 499 499 HOH HOH . E 3 HOH A 100 500 500 HOH HOH . E 3 HOH A 101 501 501 HOH HOH . E 3 HOH A 102 502 502 HOH HOH . E 3 HOH A 103 503 503 HOH HOH . E 3 HOH A 104 504 504 HOH HOH . E 3 HOH A 105 505 505 HOH HOH . E 3 HOH A 106 506 506 HOH HOH . F 3 HOH B 1 401 401 HOH HOH . F 3 HOH B 2 402 402 HOH HOH . F 3 HOH B 3 403 403 HOH HOH . F 3 HOH B 4 404 404 HOH HOH . F 3 HOH B 5 405 405 HOH HOH . F 3 HOH B 6 406 406 HOH HOH . F 3 HOH B 7 407 407 HOH HOH . F 3 HOH B 8 408 408 HOH HOH . F 3 HOH B 9 409 409 HOH HOH . F 3 HOH B 10 410 410 HOH HOH . F 3 HOH B 11 411 411 HOH HOH . F 3 HOH B 12 412 412 HOH HOH . F 3 HOH B 13 413 413 HOH HOH . F 3 HOH B 14 414 414 HOH HOH . F 3 HOH B 15 415 415 HOH HOH . F 3 HOH B 16 416 416 HOH HOH . F 3 HOH B 17 417 417 HOH HOH . F 3 HOH B 18 418 418 HOH HOH . F 3 HOH B 19 419 419 HOH HOH . F 3 HOH B 20 420 420 HOH HOH . F 3 HOH B 21 421 421 HOH HOH . F 3 HOH B 22 422 422 HOH HOH . F 3 HOH B 23 423 423 HOH HOH . F 3 HOH B 24 424 424 HOH HOH . F 3 HOH B 25 425 425 HOH HOH . F 3 HOH B 26 426 426 HOH HOH . F 3 HOH B 27 427 427 HOH HOH . F 3 HOH B 28 428 428 HOH HOH . F 3 HOH B 29 429 429 HOH HOH . F 3 HOH B 30 430 430 HOH HOH . F 3 HOH B 31 431 431 HOH HOH . F 3 HOH B 32 432 432 HOH HOH . F 3 HOH B 33 433 433 HOH HOH . F 3 HOH B 34 434 434 HOH HOH . F 3 HOH B 35 435 435 HOH HOH . F 3 HOH B 36 436 436 HOH HOH . F 3 HOH B 37 437 437 HOH HOH . F 3 HOH B 38 438 438 HOH HOH . F 3 HOH B 39 439 439 HOH HOH . F 3 HOH B 40 440 440 HOH HOH . F 3 HOH B 41 441 441 HOH HOH . F 3 HOH B 42 442 442 HOH HOH . F 3 HOH B 43 443 443 HOH HOH . F 3 HOH B 44 444 444 HOH HOH . F 3 HOH B 45 445 445 HOH HOH . F 3 HOH B 46 446 446 HOH HOH . F 3 HOH B 47 447 447 HOH HOH . F 3 HOH B 48 448 448 HOH HOH . F 3 HOH B 49 449 449 HOH HOH . F 3 HOH B 50 450 450 HOH HOH . F 3 HOH B 51 451 451 HOH HOH . F 3 HOH B 52 452 452 HOH HOH . F 3 HOH B 53 453 453 HOH HOH . F 3 HOH B 54 454 454 HOH HOH . F 3 HOH B 55 455 455 HOH HOH . F 3 HOH B 56 456 456 HOH HOH . F 3 HOH B 57 457 457 HOH HOH . F 3 HOH B 58 458 458 HOH HOH . F 3 HOH B 59 459 459 HOH HOH . F 3 HOH B 60 460 460 HOH HOH . F 3 HOH B 61 461 461 HOH HOH . F 3 HOH B 62 462 462 HOH HOH . F 3 HOH B 63 463 463 HOH HOH . F 3 HOH B 64 464 464 HOH HOH . F 3 HOH B 65 465 465 HOH HOH . F 3 HOH B 66 466 466 HOH HOH . F 3 HOH B 67 467 467 HOH HOH . F 3 HOH B 68 468 468 HOH HOH . F 3 HOH B 69 469 469 HOH HOH . F 3 HOH B 70 470 470 HOH HOH . F 3 HOH B 71 471 471 HOH HOH . F 3 HOH B 72 472 472 HOH HOH . F 3 HOH B 73 473 473 HOH HOH . F 3 HOH B 74 474 474 HOH HOH . F 3 HOH B 75 475 475 HOH HOH . F 3 HOH B 76 476 476 HOH HOH . F 3 HOH B 77 477 477 HOH HOH . F 3 HOH B 78 478 478 HOH HOH . F 3 HOH B 79 479 479 HOH HOH . F 3 HOH B 80 480 480 HOH HOH . F 3 HOH B 81 481 481 HOH HOH . F 3 HOH B 82 482 482 HOH HOH . F 3 HOH B 83 483 483 HOH HOH . F 3 HOH B 84 484 484 HOH HOH . F 3 HOH B 85 485 485 HOH HOH . F 3 HOH B 86 486 486 HOH HOH . F 3 HOH B 87 487 487 HOH HOH . F 3 HOH B 88 488 488 HOH HOH . F 3 HOH B 89 489 489 HOH HOH . F 3 HOH B 90 490 490 HOH HOH . F 3 HOH B 91 491 491 HOH HOH . F 3 HOH B 92 492 492 HOH HOH . F 3 HOH B 93 493 493 HOH HOH . F 3 HOH B 94 494 494 HOH HOH . F 3 HOH B 95 495 495 HOH HOH . F 3 HOH B 96 496 496 HOH HOH . F 3 HOH B 97 497 497 HOH HOH . F 3 HOH B 98 498 498 HOH HOH . F 3 HOH B 99 499 499 HOH HOH . F 3 HOH B 100 500 500 HOH HOH . F 3 HOH B 101 501 501 HOH HOH . F 3 HOH B 102 502 502 HOH HOH . F 3 HOH B 103 503 503 HOH HOH . F 3 HOH B 104 504 504 HOH HOH . F 3 HOH B 105 505 505 HOH HOH . F 3 HOH B 106 506 506 HOH HOH . F 3 HOH B 107 507 507 HOH HOH . F 3 HOH B 108 508 508 HOH HOH . F 3 HOH B 109 509 509 HOH HOH . F 3 HOH B 110 510 510 HOH HOH . F 3 HOH B 111 511 511 HOH HOH . F 3 HOH B 112 512 512 HOH HOH . F 3 HOH B 113 513 513 HOH HOH . F 3 HOH B 114 514 514 HOH HOH . F 3 HOH B 115 515 515 HOH HOH . F 3 HOH B 116 516 516 HOH HOH . F 3 HOH B 117 517 517 HOH HOH . F 3 HOH B 118 518 518 HOH HOH . F 3 HOH B 119 519 519 HOH HOH . F 3 HOH B 120 520 520 HOH HOH . F 3 HOH B 121 521 521 HOH HOH . F 3 HOH B 122 522 522 HOH HOH . F 3 HOH B 123 523 523 HOH HOH . F 3 HOH B 124 524 524 HOH HOH . F 3 HOH B 125 525 525 HOH HOH . F 3 HOH B 126 526 526 HOH HOH . F 3 HOH B 127 527 527 HOH HOH . F 3 HOH B 128 528 528 HOH HOH . F 3 HOH B 129 529 529 HOH HOH . F 3 HOH B 130 530 530 HOH HOH . F 3 HOH B 131 531 531 HOH HOH . F 3 HOH B 132 532 532 HOH HOH . F 3 HOH B 133 533 533 HOH HOH . F 3 HOH B 134 534 534 HOH HOH . F 3 HOH B 135 535 535 HOH HOH . F 3 HOH B 136 536 536 HOH HOH . F 3 HOH B 137 537 537 HOH HOH . F 3 HOH B 138 538 538 HOH HOH . F 3 HOH B 139 539 539 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 5RU . . . D 2 -24.794 3.118 100.9 1 38.02 ? C11 5RU 301 B 1 HETATM 2 C C12 5RU . . . D 2 -24.817 2.335 99.777 1 41.48 ? C12 5RU 301 B 1 HETATM 3 C C10 5RU . . . D 2 -24.406 2.539 102.075 1 42.19 ? C10 5RU 301 B 1 HETATM 4 C C13 5RU . . . D 2 -24.467 1.005 99.816 1 46.5 ? C13 5RU 301 B 1 HETATM 5 C C9 5RU . . . D 2 -24.027 1.203 102.158 1 47.58 ? C9 5RU 301 B 1 HETATM 6 C C3 5RU . . . D 2 -18.959 2.331 103.449 1 32.21 ? C3 5RU 301 B 1 HETATM 7 C C14 5RU . . . D 2 -24.071 0.43 100.999 1 48.93 ? C14 5RU 301 B 1 HETATM 8 C C4 5RU . . . D 2 -18.75 1.895 104.737 1 34.25 ? C4 5RU 301 B 1 HETATM 9 C C2 5RU . . . D 2 -18.08 3.237 102.878 1 33.78 ? C2 5RU 301 B 1 HETATM 10 C C18 5RU . . . D 2 -16.88 3.199 104.86 1 33.8 ? C18 5RU 301 B 1 HETATM 11 C C6 5RU . . . D 2 -20.552 0.908 104.063 1 40.77 ? C6 5RU 301 B 1 HETATM 12 C C8 5RU . . . D 2 -23.626 0.716 103.531 1 31.64 ? C8 5RU 301 B 1 HETATM 13 N N17 5RU . . . D 2 -17.696 2.32 105.479 1 33.43 ? N17 5RU 301 B 1 HETATM 14 N N5 5RU . . . D 2 -19.741 1.008 105.107 1 36 ? N5 5RU 301 B 1 HETATM 15 N N20 5RU . . . D 2 -17.039 3.663 103.598 1 38.83 ? N20 5RU 301 B 1 HETATM 16 N N16 5RU . . . D 2 -20.102 1.682 103.042 1 33.23 ? N16 5RU 301 B 1 HETATM 17 N N19 5RU . . . D 2 -15.764 3.719 105.559 1 33.49 ? N19 5RU 301 B 1 HETATM 18 O O1 5RU . . . D 2 -18.189 3.756 101.617 1 33.35 ? O1 5RU 301 B 1 HETATM 19 F F15 5RU . . . D 2 -23.746 -0.884 100.911 1 57.8 ? F15 5RU 301 B 1 HETATM 20 S S7 5RU . . . D 2 -22 -0.081 103.86 1 50.51 ? S7 5RU 301 B 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #