data_5U13 # _model_server_result.job_id Uv79qK6eoR4jr_E1ftW4OA _model_server_result.datetime_utc '2024-11-08 16:44:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5U13 # _exptl.entry_id 5U13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 331.35 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-8-{[2-(4-methoxyphenyl)-2-oxoethyl]sulfanyl}-1,9-dihydro-6H-purin-6-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.47 _cell.angle_gamma 90 _cell.entry_id 5U13 _cell.length_a 95.881 _cell.length_b 84.803 _cell.length_c 84.223 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H13 N5 O3 S' _chem_comp.formula_weight 331.35 _chem_comp.id YH5 _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-8-{[2-(4-methoxyphenyl)-2-oxoethyl]sulfanyl}-1,9-dihydro-6H-purin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 O3 YH5 sing 376 n n O3 C11 YH5 sing 377 n n C11 C10 YH5 doub 378 n y C11 C12 YH5 sing 379 n y C10 C9 YH5 sing 380 n y C12 C13 YH5 doub 381 n y C9 C8 YH5 doub 382 n y C13 C8 YH5 sing 383 n y C8 C7 YH5 sing 384 n n O1 C1 YH5 doub 385 n n C7 O2 YH5 doub 386 n n C7 C6 YH5 sing 387 n n C6 S1 YH5 sing 388 n n C1 C2 YH5 sing 389 n n C1 N4 YH5 sing 390 n n N1 C2 YH5 sing 391 n y N1 C3 YH5 doub 392 n y C2 C4 YH5 doub 393 n y N4 C5 YH5 sing 394 n n C3 S1 YH5 sing 395 n n C3 N2 YH5 sing 396 n y C4 N2 YH5 sing 397 n y C4 N3 YH5 sing 398 n n C5 N3 YH5 doub 399 n n C5 N5 YH5 sing 400 n n C10 H2 YH5 sing 401 n n C12 H3 YH5 sing 402 n n C13 H4 YH5 sing 403 n n C14 H5 YH5 sing 404 n n C14 H6 YH5 sing 405 n n C14 H7 YH5 sing 406 n n N2 H8 YH5 sing 407 n n N4 H9 YH5 sing 408 n n N5 H10 YH5 sing 409 n n N5 H11 YH5 sing 410 n n C6 H12 YH5 sing 411 n n C6 H13 YH5 sing 412 n n C9 H14 YH5 sing 413 n n # _atom_sites.entry_id 5U13 _atom_sites.fract_transf_matrix[1][1] 0.01043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003892 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 YH5 A 1 301 2 YH5 UNL . D 2 YH5 B 1 301 3 YH5 UNL . E 3 HOH A 1 401 165 HOH HOH . E 3 HOH A 2 402 19 HOH HOH . E 3 HOH A 3 403 185 HOH HOH . E 3 HOH A 4 404 97 HOH HOH . E 3 HOH A 5 405 3 HOH HOH . E 3 HOH A 6 406 141 HOH HOH . E 3 HOH A 7 407 85 HOH HOH . E 3 HOH A 8 408 181 HOH HOH . E 3 HOH A 9 409 94 HOH HOH . E 3 HOH A 10 410 99 HOH HOH . E 3 HOH A 11 411 52 HOH HOH . E 3 HOH A 12 412 146 HOH HOH . E 3 HOH A 13 413 159 HOH HOH . E 3 HOH A 14 414 142 HOH HOH . E 3 HOH A 15 415 17 HOH HOH . E 3 HOH A 16 416 147 HOH HOH . E 3 HOH A 17 417 154 HOH HOH . E 3 HOH A 18 418 22 HOH HOH . E 3 HOH A 19 419 55 HOH HOH . E 3 HOH A 20 420 117 HOH HOH . E 3 HOH A 21 421 34 HOH HOH . E 3 HOH A 22 422 133 HOH HOH . E 3 HOH A 23 423 211 HOH HOH . E 3 HOH A 24 424 42 HOH HOH . E 3 HOH A 25 425 54 HOH HOH . E 3 HOH A 26 426 108 HOH HOH . E 3 HOH A 27 427 12 HOH HOH . E 3 HOH A 28 428 186 HOH HOH . E 3 HOH A 29 429 155 HOH HOH . E 3 HOH A 30 430 123 HOH HOH . E 3 HOH A 31 431 75 HOH HOH . E 3 HOH A 32 432 192 HOH HOH . E 3 HOH A 33 433 18 HOH HOH . E 3 HOH A 34 434 33 HOH HOH . E 3 HOH A 35 435 84 HOH HOH . E 3 HOH A 36 436 40 HOH HOH . E 3 HOH A 37 437 93 HOH HOH . E 3 HOH A 38 438 65 HOH HOH . E 3 HOH A 39 439 30 HOH HOH . E 3 HOH A 40 440 124 HOH HOH . E 3 HOH A 41 441 64 HOH HOH . E 3 HOH A 42 442 164 HOH HOH . E 3 HOH A 43 443 171 HOH HOH . E 3 HOH A 44 444 71 HOH HOH . E 3 HOH A 45 445 46 HOH HOH . E 3 HOH A 46 446 70 HOH HOH . E 3 HOH A 47 447 90 HOH HOH . E 3 HOH A 48 448 210 HOH HOH . E 3 HOH A 49 449 122 HOH HOH . E 3 HOH A 50 450 13 HOH HOH . E 3 HOH A 51 451 35 HOH HOH . E 3 HOH A 52 452 107 HOH HOH . E 3 HOH A 53 453 166 HOH HOH . E 3 HOH A 54 454 58 HOH HOH . E 3 HOH A 55 455 149 HOH HOH . E 3 HOH A 56 456 183 HOH HOH . E 3 HOH A 57 457 67 HOH HOH . E 3 HOH A 58 458 6 HOH HOH . E 3 HOH A 59 459 14 HOH HOH . E 3 HOH A 60 460 53 HOH HOH . E 3 HOH A 61 461 28 HOH HOH . E 3 HOH A 62 462 109 HOH HOH . E 3 HOH A 63 463 167 HOH HOH . E 3 HOH A 64 464 73 HOH HOH . E 3 HOH A 65 465 160 HOH HOH . E 3 HOH A 66 466 83 HOH HOH . E 3 HOH A 67 467 49 HOH HOH . E 3 HOH A 68 468 169 HOH HOH . E 3 HOH A 69 469 139 HOH HOH . E 3 HOH A 70 470 44 HOH HOH . E 3 HOH A 71 471 80 HOH HOH . E 3 HOH A 72 472 102 HOH HOH . E 3 HOH A 73 473 156 HOH HOH . E 3 HOH A 74 474 138 HOH HOH . E 3 HOH A 75 475 37 HOH HOH . E 3 HOH A 76 476 43 HOH HOH . E 3 HOH A 77 477 195 HOH HOH . E 3 HOH A 78 478 4 HOH HOH . E 3 HOH A 79 479 172 HOH HOH . E 3 HOH A 80 480 182 HOH HOH . E 3 HOH A 81 481 100 HOH HOH . E 3 HOH A 82 482 27 HOH HOH . E 3 HOH A 83 483 148 HOH HOH . E 3 HOH A 84 484 145 HOH HOH . E 3 HOH A 85 485 24 HOH HOH . E 3 HOH A 86 486 205 HOH HOH . E 3 HOH A 87 487 45 HOH HOH . E 3 HOH A 88 488 106 HOH HOH . E 3 HOH A 89 489 23 HOH HOH . E 3 HOH A 90 490 188 HOH HOH . E 3 HOH A 91 491 126 HOH HOH . E 3 HOH A 92 492 98 HOH HOH . E 3 HOH A 93 493 175 HOH HOH . E 3 HOH A 94 494 206 HOH HOH . E 3 HOH A 95 495 140 HOH HOH . E 3 HOH A 96 496 191 HOH HOH . E 3 HOH A 97 497 120 HOH HOH . E 3 HOH A 98 498 32 HOH HOH . E 3 HOH A 99 499 176 HOH HOH . E 3 HOH A 100 500 10 HOH HOH . E 3 HOH A 101 501 48 HOH HOH . E 3 HOH A 102 502 187 HOH HOH . E 3 HOH A 103 503 177 HOH HOH . E 3 HOH A 104 504 131 HOH HOH . E 3 HOH A 105 505 69 HOH HOH . E 3 HOH A 106 506 179 HOH HOH . E 3 HOH A 107 507 193 HOH HOH . E 3 HOH A 108 508 194 HOH HOH . E 3 HOH A 109 509 130 HOH HOH . E 3 HOH A 110 510 50 HOH HOH . E 3 HOH A 111 511 180 HOH HOH . E 3 HOH A 112 512 204 HOH HOH . E 3 HOH A 113 513 128 HOH HOH . E 3 HOH A 114 514 132 HOH HOH . E 3 HOH A 115 515 202 HOH HOH . F 3 HOH B 1 401 82 HOH HOH . F 3 HOH B 2 402 61 HOH HOH . F 3 HOH B 3 403 1 HOH HOH . F 3 HOH B 4 404 119 HOH HOH . F 3 HOH B 5 405 57 HOH HOH . F 3 HOH B 6 406 199 HOH HOH . F 3 HOH B 7 407 21 HOH HOH . F 3 HOH B 8 408 39 HOH HOH . F 3 HOH B 9 409 111 HOH HOH . F 3 HOH B 10 410 38 HOH HOH . F 3 HOH B 11 411 47 HOH HOH . F 3 HOH B 12 412 41 HOH HOH . F 3 HOH B 13 413 114 HOH HOH . F 3 HOH B 14 414 36 HOH HOH . F 3 HOH B 15 415 59 HOH HOH . F 3 HOH B 16 416 25 HOH HOH . F 3 HOH B 17 417 112 HOH HOH . F 3 HOH B 18 418 9 HOH HOH . F 3 HOH B 19 419 189 HOH HOH . F 3 HOH B 20 420 76 HOH HOH . F 3 HOH B 21 421 101 HOH HOH . F 3 HOH B 22 422 91 HOH HOH . F 3 HOH B 23 423 118 HOH HOH . F 3 HOH B 24 424 104 HOH HOH . F 3 HOH B 25 425 79 HOH HOH . F 3 HOH B 26 426 96 HOH HOH . F 3 HOH B 27 427 87 HOH HOH . F 3 HOH B 28 428 31 HOH HOH . F 3 HOH B 29 429 11 HOH HOH . F 3 HOH B 30 430 15 HOH HOH . F 3 HOH B 31 431 86 HOH HOH . F 3 HOH B 32 432 161 HOH HOH . F 3 HOH B 33 433 95 HOH HOH . F 3 HOH B 34 434 8 HOH HOH . F 3 HOH B 35 435 78 HOH HOH . F 3 HOH B 36 436 88 HOH HOH . F 3 HOH B 37 437 135 HOH HOH . F 3 HOH B 38 438 20 HOH HOH . F 3 HOH B 39 439 103 HOH HOH . F 3 HOH B 40 440 63 HOH HOH . F 3 HOH B 41 441 162 HOH HOH . F 3 HOH B 42 442 56 HOH HOH . F 3 HOH B 43 443 51 HOH HOH . F 3 HOH B 44 444 16 HOH HOH . F 3 HOH B 45 445 168 HOH HOH . F 3 HOH B 46 446 7 HOH HOH . F 3 HOH B 47 447 200 HOH HOH . F 3 HOH B 48 448 72 HOH HOH . F 3 HOH B 49 449 136 HOH HOH . F 3 HOH B 50 450 144 HOH HOH . F 3 HOH B 51 451 66 HOH HOH . F 3 HOH B 52 452 5 HOH HOH . F 3 HOH B 53 453 89 HOH HOH . F 3 HOH B 54 454 92 HOH HOH . F 3 HOH B 55 455 26 HOH HOH . F 3 HOH B 56 456 170 HOH HOH . F 3 HOH B 57 457 174 HOH HOH . F 3 HOH B 58 458 134 HOH HOH . F 3 HOH B 59 459 2 HOH HOH . F 3 HOH B 60 460 137 HOH HOH . F 3 HOH B 61 461 62 HOH HOH . F 3 HOH B 62 462 60 HOH HOH . F 3 HOH B 63 463 105 HOH HOH . F 3 HOH B 64 464 157 HOH HOH . F 3 HOH B 65 465 150 HOH HOH . F 3 HOH B 66 466 29 HOH HOH . F 3 HOH B 67 467 198 HOH HOH . F 3 HOH B 68 468 115 HOH HOH . F 3 HOH B 69 469 158 HOH HOH . F 3 HOH B 70 470 121 HOH HOH . F 3 HOH B 71 471 208 HOH HOH . F 3 HOH B 72 472 203 HOH HOH . F 3 HOH B 73 473 207 HOH HOH . F 3 HOH B 74 474 74 HOH HOH . F 3 HOH B 75 475 151 HOH HOH . F 3 HOH B 76 476 143 HOH HOH . F 3 HOH B 77 477 196 HOH HOH . F 3 HOH B 78 478 209 HOH HOH . F 3 HOH B 79 479 127 HOH HOH . F 3 HOH B 80 480 197 HOH HOH . F 3 HOH B 81 481 113 HOH HOH . F 3 HOH B 82 482 125 HOH HOH . F 3 HOH B 83 483 163 HOH HOH . F 3 HOH B 84 484 178 HOH HOH . F 3 HOH B 85 485 201 HOH HOH . F 3 HOH B 86 486 110 HOH HOH . F 3 HOH B 87 487 129 HOH HOH . F 3 HOH B 88 488 116 HOH HOH . F 3 HOH B 89 489 184 HOH HOH . F 3 HOH B 90 490 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YH5 . . . C 2 10.386 1.57 23.71 1 36.62 ? C1 YH5 301 A 1 HETATM 2 O O1 YH5 . . . C 2 10.181 1.989 22.584 1 33.92 ? O1 YH5 301 A 1 HETATM 3 N N1 YH5 . . . C 2 8.45 -0.062 23.933 1 36.31 ? N1 YH5 301 A 1 HETATM 4 S S1 YH5 . . . C 2 6.791 -1.93 25.208 1 56.57 ? S1 YH5 301 A 1 HETATM 5 C C10 YH5 . . . C 2 4.739 -4.478 19.703 1 43.3 ? C10 YH5 301 A 1 HETATM 6 C C11 YH5 . . . C 2 3.693 -3.593 19.499 1 42.74 ? C11 YH5 301 A 1 HETATM 7 C C12 YH5 . . . C 2 3.492 -2.525 20.343 1 43.55 ? C12 YH5 301 A 1 HETATM 8 C C13 YH5 . . . C 2 4.339 -2.336 21.397 1 40.05 ? C13 YH5 301 A 1 HETATM 9 C C14 YH5 . . . C 2 2.441 -5.087 18.22 1 50.88 ? C14 YH5 301 A 1 HETATM 10 N N2 YH5 . . . C 2 8.973 -0.675 26.052 1 43.24 ? N2 YH5 301 A 1 HETATM 11 C C2 YH5 . . . C 2 9.571 0.592 24.388 1 38.28 ? C2 YH5 301 A 1 HETATM 12 O O2 YH5 . . . C 2 7.258 -3.849 22.865 1 44.64 ? O2 YH5 301 A 1 HETATM 13 N N3 YH5 . . . C 2 10.921 0.633 26.448 1 37.55 ? N3 YH5 301 A 1 HETATM 14 C C3 YH5 . . . C 2 8.122 -0.813 24.981 1 47.95 ? C3 YH5 301 A 1 HETATM 15 O O3 YH5 . . . C 2 2.787 -3.714 18.448 1 54.29 ? O3 YH5 301 A 1 HETATM 16 C C4 YH5 . . . C 2 9.909 0.23 25.67 1 39.56 ? C4 YH5 301 A 1 HETATM 17 N N4 YH5 . . . C 2 11.431 1.967 24.53 1 45.47 ? N4 YH5 301 A 1 HETATM 18 C C5 YH5 . . . C 2 11.673 1.513 25.851 1 37.53 ? C5 YH5 301 A 1 HETATM 19 N N5 YH5 . . . C 2 12.767 2.091 26.469 1 33.36 ? N5 YH5 301 A 1 HETATM 20 C C6 YH5 . . . C 2 6.001 -1.862 23.6 1 43.91 ? C6 YH5 301 A 1 HETATM 21 C C7 YH5 . . . C 2 6.327 -3.054 22.726 1 43.43 ? C7 YH5 301 A 1 HETATM 22 C C8 YH5 . . . C 2 5.386 -3.218 21.606 1 43.25 ? C8 YH5 301 A 1 HETATM 23 C C9 YH5 . . . C 2 5.585 -4.283 20.764 1 47.23 ? C9 YH5 301 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #