data_5U13
#
_model_server_result.job_id            ERcPFZMcG4S7UAWhV8GY0A 
_model_server_result.datetime_utc      '2024-11-23 22:46:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u13 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    5U13 
#
_exptl.entry_id    5U13 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              331.35 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-amino-8-{[2-(4-methoxyphenyl)-2-oxoethyl]sulfanyl}-1,9-dihydro-6H-purin-6-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.47 
_cell.angle_gamma         90 
_cell.entry_id            5U13 
_cell.length_a            95.881 
_cell.length_b            84.803 
_cell.length_c            84.223 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5U13 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C14 H13 N5 O3 S' 
_chem_comp.formula_weight    331.35 
_chem_comp.id                YH5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-amino-8-{[2-(4-methoxyphenyl)-2-oxoethyl]sulfanyl}-1,9-dihydro-6H-purin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C14 O3 YH5 sing 376 n n 
O3 C11 YH5 sing 377 n n 
C11 C10 YH5 doub 378 n y 
C11 C12 YH5 sing 379 n y 
C10 C9 YH5 sing 380 n y 
C12 C13 YH5 doub 381 n y 
C9 C8 YH5 doub 382 n y 
C13 C8 YH5 sing 383 n y 
C8 C7 YH5 sing 384 n n 
O1 C1 YH5 doub 385 n n 
C7 O2 YH5 doub 386 n n 
C7 C6 YH5 sing 387 n n 
C6 S1 YH5 sing 388 n n 
C1 C2 YH5 sing 389 n n 
C1 N4 YH5 sing 390 n n 
N1 C2 YH5 sing 391 n y 
N1 C3 YH5 doub 392 n y 
C2 C4 YH5 doub 393 n y 
N4 C5 YH5 sing 394 n n 
C3 S1 YH5 sing 395 n n 
C3 N2 YH5 sing 396 n y 
C4 N2 YH5 sing 397 n y 
C4 N3 YH5 sing 398 n n 
C5 N3 YH5 doub 399 n n 
C5 N5 YH5 sing 400 n n 
C10 H2 YH5 sing 401 n n 
C12 H3 YH5 sing 402 n n 
C13 H4 YH5 sing 403 n n 
C14 H5 YH5 sing 404 n n 
C14 H6 YH5 sing 405 n n 
C14 H7 YH5 sing 406 n n 
N2 H8 YH5 sing 407 n n 
N4 H9 YH5 sing 408 n n 
N5 H10 YH5 sing 409 n n 
N5 H11 YH5 sing 410 n n 
C6 H12 YH5 sing 411 n n 
C6 H13 YH5 sing 412 n n 
C9 H14 YH5 sing 413 n n 
#
_atom_sites.entry_id                     5U13 
_atom_sites.fract_transf_matrix[1][1]    0.01043 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003892 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011792 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012673 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 YH5 A 1 301 2 YH5 UNL . 
D 2 YH5 B 1 301 3 YH5 UNL . 
E 3 HOH A 1 401 165 HOH HOH . 
E 3 HOH A 2 402 19 HOH HOH . 
E 3 HOH A 3 403 185 HOH HOH . 
E 3 HOH A 4 404 97 HOH HOH . 
E 3 HOH A 5 405 3 HOH HOH . 
E 3 HOH A 6 406 141 HOH HOH . 
E 3 HOH A 7 407 85 HOH HOH . 
E 3 HOH A 8 408 181 HOH HOH . 
E 3 HOH A 9 409 94 HOH HOH . 
E 3 HOH A 10 410 99 HOH HOH . 
E 3 HOH A 11 411 52 HOH HOH . 
E 3 HOH A 12 412 146 HOH HOH . 
E 3 HOH A 13 413 159 HOH HOH . 
E 3 HOH A 14 414 142 HOH HOH . 
E 3 HOH A 15 415 17 HOH HOH . 
E 3 HOH A 16 416 147 HOH HOH . 
E 3 HOH A 17 417 154 HOH HOH . 
E 3 HOH A 18 418 22 HOH HOH . 
E 3 HOH A 19 419 55 HOH HOH . 
E 3 HOH A 20 420 117 HOH HOH . 
E 3 HOH A 21 421 34 HOH HOH . 
E 3 HOH A 22 422 133 HOH HOH . 
E 3 HOH A 23 423 211 HOH HOH . 
E 3 HOH A 24 424 42 HOH HOH . 
E 3 HOH A 25 425 54 HOH HOH . 
E 3 HOH A 26 426 108 HOH HOH . 
E 3 HOH A 27 427 12 HOH HOH . 
E 3 HOH A 28 428 186 HOH HOH . 
E 3 HOH A 29 429 155 HOH HOH . 
E 3 HOH A 30 430 123 HOH HOH . 
E 3 HOH A 31 431 75 HOH HOH . 
E 3 HOH A 32 432 192 HOH HOH . 
E 3 HOH A 33 433 18 HOH HOH . 
E 3 HOH A 34 434 33 HOH HOH . 
E 3 HOH A 35 435 84 HOH HOH . 
E 3 HOH A 36 436 40 HOH HOH . 
E 3 HOH A 37 437 93 HOH HOH . 
E 3 HOH A 38 438 65 HOH HOH . 
E 3 HOH A 39 439 30 HOH HOH . 
E 3 HOH A 40 440 124 HOH HOH . 
E 3 HOH A 41 441 64 HOH HOH . 
E 3 HOH A 42 442 164 HOH HOH . 
E 3 HOH A 43 443 171 HOH HOH . 
E 3 HOH A 44 444 71 HOH HOH . 
E 3 HOH A 45 445 46 HOH HOH . 
E 3 HOH A 46 446 70 HOH HOH . 
E 3 HOH A 47 447 90 HOH HOH . 
E 3 HOH A 48 448 210 HOH HOH . 
E 3 HOH A 49 449 122 HOH HOH . 
E 3 HOH A 50 450 13 HOH HOH . 
E 3 HOH A 51 451 35 HOH HOH . 
E 3 HOH A 52 452 107 HOH HOH . 
E 3 HOH A 53 453 166 HOH HOH . 
E 3 HOH A 54 454 58 HOH HOH . 
E 3 HOH A 55 455 149 HOH HOH . 
E 3 HOH A 56 456 183 HOH HOH . 
E 3 HOH A 57 457 67 HOH HOH . 
E 3 HOH A 58 458 6 HOH HOH . 
E 3 HOH A 59 459 14 HOH HOH . 
E 3 HOH A 60 460 53 HOH HOH . 
E 3 HOH A 61 461 28 HOH HOH . 
E 3 HOH A 62 462 109 HOH HOH . 
E 3 HOH A 63 463 167 HOH HOH . 
E 3 HOH A 64 464 73 HOH HOH . 
E 3 HOH A 65 465 160 HOH HOH . 
E 3 HOH A 66 466 83 HOH HOH . 
E 3 HOH A 67 467 49 HOH HOH . 
E 3 HOH A 68 468 169 HOH HOH . 
E 3 HOH A 69 469 139 HOH HOH . 
E 3 HOH A 70 470 44 HOH HOH . 
E 3 HOH A 71 471 80 HOH HOH . 
E 3 HOH A 72 472 102 HOH HOH . 
E 3 HOH A 73 473 156 HOH HOH . 
E 3 HOH A 74 474 138 HOH HOH . 
E 3 HOH A 75 475 37 HOH HOH . 
E 3 HOH A 76 476 43 HOH HOH . 
E 3 HOH A 77 477 195 HOH HOH . 
E 3 HOH A 78 478 4 HOH HOH . 
E 3 HOH A 79 479 172 HOH HOH . 
E 3 HOH A 80 480 182 HOH HOH . 
E 3 HOH A 81 481 100 HOH HOH . 
E 3 HOH A 82 482 27 HOH HOH . 
E 3 HOH A 83 483 148 HOH HOH . 
E 3 HOH A 84 484 145 HOH HOH . 
E 3 HOH A 85 485 24 HOH HOH . 
E 3 HOH A 86 486 205 HOH HOH . 
E 3 HOH A 87 487 45 HOH HOH . 
E 3 HOH A 88 488 106 HOH HOH . 
E 3 HOH A 89 489 23 HOH HOH . 
E 3 HOH A 90 490 188 HOH HOH . 
E 3 HOH A 91 491 126 HOH HOH . 
E 3 HOH A 92 492 98 HOH HOH . 
E 3 HOH A 93 493 175 HOH HOH . 
E 3 HOH A 94 494 206 HOH HOH . 
E 3 HOH A 95 495 140 HOH HOH . 
E 3 HOH A 96 496 191 HOH HOH . 
E 3 HOH A 97 497 120 HOH HOH . 
E 3 HOH A 98 498 32 HOH HOH . 
E 3 HOH A 99 499 176 HOH HOH . 
E 3 HOH A 100 500 10 HOH HOH . 
E 3 HOH A 101 501 48 HOH HOH . 
E 3 HOH A 102 502 187 HOH HOH . 
E 3 HOH A 103 503 177 HOH HOH . 
E 3 HOH A 104 504 131 HOH HOH . 
E 3 HOH A 105 505 69 HOH HOH . 
E 3 HOH A 106 506 179 HOH HOH . 
E 3 HOH A 107 507 193 HOH HOH . 
E 3 HOH A 108 508 194 HOH HOH . 
E 3 HOH A 109 509 130 HOH HOH . 
E 3 HOH A 110 510 50 HOH HOH . 
E 3 HOH A 111 511 180 HOH HOH . 
E 3 HOH A 112 512 204 HOH HOH . 
E 3 HOH A 113 513 128 HOH HOH . 
E 3 HOH A 114 514 132 HOH HOH . 
E 3 HOH A 115 515 202 HOH HOH . 
F 3 HOH B 1 401 82 HOH HOH . 
F 3 HOH B 2 402 61 HOH HOH . 
F 3 HOH B 3 403 1 HOH HOH . 
F 3 HOH B 4 404 119 HOH HOH . 
F 3 HOH B 5 405 57 HOH HOH . 
F 3 HOH B 6 406 199 HOH HOH . 
F 3 HOH B 7 407 21 HOH HOH . 
F 3 HOH B 8 408 39 HOH HOH . 
F 3 HOH B 9 409 111 HOH HOH . 
F 3 HOH B 10 410 38 HOH HOH . 
F 3 HOH B 11 411 47 HOH HOH . 
F 3 HOH B 12 412 41 HOH HOH . 
F 3 HOH B 13 413 114 HOH HOH . 
F 3 HOH B 14 414 36 HOH HOH . 
F 3 HOH B 15 415 59 HOH HOH . 
F 3 HOH B 16 416 25 HOH HOH . 
F 3 HOH B 17 417 112 HOH HOH . 
F 3 HOH B 18 418 9 HOH HOH . 
F 3 HOH B 19 419 189 HOH HOH . 
F 3 HOH B 20 420 76 HOH HOH . 
F 3 HOH B 21 421 101 HOH HOH . 
F 3 HOH B 22 422 91 HOH HOH . 
F 3 HOH B 23 423 118 HOH HOH . 
F 3 HOH B 24 424 104 HOH HOH . 
F 3 HOH B 25 425 79 HOH HOH . 
F 3 HOH B 26 426 96 HOH HOH . 
F 3 HOH B 27 427 87 HOH HOH . 
F 3 HOH B 28 428 31 HOH HOH . 
F 3 HOH B 29 429 11 HOH HOH . 
F 3 HOH B 30 430 15 HOH HOH . 
F 3 HOH B 31 431 86 HOH HOH . 
F 3 HOH B 32 432 161 HOH HOH . 
F 3 HOH B 33 433 95 HOH HOH . 
F 3 HOH B 34 434 8 HOH HOH . 
F 3 HOH B 35 435 78 HOH HOH . 
F 3 HOH B 36 436 88 HOH HOH . 
F 3 HOH B 37 437 135 HOH HOH . 
F 3 HOH B 38 438 20 HOH HOH . 
F 3 HOH B 39 439 103 HOH HOH . 
F 3 HOH B 40 440 63 HOH HOH . 
F 3 HOH B 41 441 162 HOH HOH . 
F 3 HOH B 42 442 56 HOH HOH . 
F 3 HOH B 43 443 51 HOH HOH . 
F 3 HOH B 44 444 16 HOH HOH . 
F 3 HOH B 45 445 168 HOH HOH . 
F 3 HOH B 46 446 7 HOH HOH . 
F 3 HOH B 47 447 200 HOH HOH . 
F 3 HOH B 48 448 72 HOH HOH . 
F 3 HOH B 49 449 136 HOH HOH . 
F 3 HOH B 50 450 144 HOH HOH . 
F 3 HOH B 51 451 66 HOH HOH . 
F 3 HOH B 52 452 5 HOH HOH . 
F 3 HOH B 53 453 89 HOH HOH . 
F 3 HOH B 54 454 92 HOH HOH . 
F 3 HOH B 55 455 26 HOH HOH . 
F 3 HOH B 56 456 170 HOH HOH . 
F 3 HOH B 57 457 174 HOH HOH . 
F 3 HOH B 58 458 134 HOH HOH . 
F 3 HOH B 59 459 2 HOH HOH . 
F 3 HOH B 60 460 137 HOH HOH . 
F 3 HOH B 61 461 62 HOH HOH . 
F 3 HOH B 62 462 60 HOH HOH . 
F 3 HOH B 63 463 105 HOH HOH . 
F 3 HOH B 64 464 157 HOH HOH . 
F 3 HOH B 65 465 150 HOH HOH . 
F 3 HOH B 66 466 29 HOH HOH . 
F 3 HOH B 67 467 198 HOH HOH . 
F 3 HOH B 68 468 115 HOH HOH . 
F 3 HOH B 69 469 158 HOH HOH . 
F 3 HOH B 70 470 121 HOH HOH . 
F 3 HOH B 71 471 208 HOH HOH . 
F 3 HOH B 72 472 203 HOH HOH . 
F 3 HOH B 73 473 207 HOH HOH . 
F 3 HOH B 74 474 74 HOH HOH . 
F 3 HOH B 75 475 151 HOH HOH . 
F 3 HOH B 76 476 143 HOH HOH . 
F 3 HOH B 77 477 196 HOH HOH . 
F 3 HOH B 78 478 209 HOH HOH . 
F 3 HOH B 79 479 127 HOH HOH . 
F 3 HOH B 80 480 197 HOH HOH . 
F 3 HOH B 81 481 113 HOH HOH . 
F 3 HOH B 82 482 125 HOH HOH . 
F 3 HOH B 83 483 163 HOH HOH . 
F 3 HOH B 84 484 178 HOH HOH . 
F 3 HOH B 85 485 201 HOH HOH . 
F 3 HOH B 86 486 110 HOH HOH . 
F 3 HOH B 87 487 129 HOH HOH . 
F 3 HOH B 88 488 116 HOH HOH . 
F 3 HOH B 89 489 184 HOH HOH . 
F 3 HOH B 90 490 190 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 YH5 . . . D 2 25.612 -6.468 -9.501 1 47.37 ? C1 YH5 301 B 1 
HETATM 2 O O1 YH5 . . . D 2 26.067 -6.314 -8.371 1 46.86 ? O1 YH5 301 B 1 
HETATM 3 N N1 YH5 . . . D 2 25.792 -8.979 -9.645 1 52.61 ? N1 YH5 301 B 1 
HETATM 4 S S1 YH5 . . . D 2 25.695 -11.569 -10.515 1 69.47 ? S1 YH5 301 B 1 
HETATM 5 C C10 YH5 . . . D 2 25.435 -14.476 -4.851 1 63.72 ? C10 YH5 301 B 1 
HETATM 6 C C11 YH5 . . . D 2 26.802 -14.735 -4.83 1 67.77 ? C11 YH5 301 B 1 
HETATM 7 C C12 YH5 . . . D 2 27.603 -14.227 -5.829 1 63.51 ? C12 YH5 301 B 1 
HETATM 8 C C13 YH5 . . . D 2 27.065 -13.474 -6.84 1 70.4 ? C13 YH5 301 B 1 
HETATM 9 C C14 YH5 . . . D 2 26.672 -16.485 -3.257 1 57.79 ? C14 YH5 301 B 1 
HETATM 10 N N2 YH5 . . . D 2 24.976 -9.193 -11.716 1 52.81 ? N2 YH5 301 B 1 
HETATM 11 C C2 YH5 . . . D 2 25.468 -7.749 -10.15 1 57.5 ? C2 YH5 301 B 1 
HETATM 12 O O2 YH5 . . . D 2 23.882 -12.396 -8.161 1 62.76 ? O2 YH5 301 B 1 
HETATM 13 N N3 YH5 . . . D 2 24.549 -6.83 -12.215 1 47.48 ? N3 YH5 301 B 1 
HETATM 14 C C3 YH5 . . . D 2 25.486 -9.831 -10.612 1 60.23 ? C3 YH5 301 B 1 
HETATM 15 O O3 YH5 . . . D 2 27.485 -15.477 -3.859 1 62.98 ? O3 YH5 301 B 1 
HETATM 16 C C4 YH5 . . . D 2 24.963 -7.847 -11.423 1 55.15 ? C4 YH5 301 B 1 
HETATM 17 N N4 YH5 . . . D 2 25.173 -5.458 -10.336 1 45.1 ? N4 YH5 301 B 1 
HETATM 18 C C5 YH5 . . . D 2 24.665 -5.652 -11.646 1 50.8 ? C5 YH5 301 B 1 
HETATM 19 N N5 YH5 . . . D 2 24.323 -4.451 -12.252 1 38.34 ? N5 YH5 301 B 1 
HETATM 20 C C6 YH5 . . . D 2 26.057 -11.565 -8.75 1 64.03 ? C6 YH5 301 B 1 
HETATM 21 C C7 YH5 . . . D 2 25.096 -12.404 -7.956 1 72.2 ? C7 YH5 301 B 1 
HETATM 22 C C8 YH5 . . . D 2 25.701 -13.214 -6.87 1 72.04 ? C8 YH5 301 B 1 
HETATM 23 C C9 YH5 . . . D 2 24.888 -13.719 -5.87 1 68.57 ? C9 YH5 301 B 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#