data_5U18 # _model_server_result.job_id sPswUF6Fiur1SIfw_nnyMg _model_server_result.datetime_utc '2024-11-13 20:34:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u18 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5U18 # _exptl.entry_id 5U18 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U18 _cell.length_a 65.113 _cell.length_b 68.892 _cell.length_c 69.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U18 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 353 n n N HN1 SAH sing 354 n n N HN2 SAH sing 355 n n CA CB SAH sing 356 n n CA C SAH sing 357 n n CA HA SAH sing 358 n n CB CG SAH sing 359 n n CB HB1 SAH sing 360 n n CB HB2 SAH sing 361 n n CG SD SAH sing 362 n n CG HG1 SAH sing 363 n n CG HG2 SAH sing 364 n n SD C5' SAH sing 365 n n C O SAH doub 366 n n C OXT SAH sing 367 n n OXT HXT SAH sing 368 n n C5' C4' SAH sing 369 n n C5' "H5'1" SAH sing 370 n n C5' "H5'2" SAH sing 371 n n C4' O4' SAH sing 372 n n C4' C3' SAH sing 373 n n C4' H4' SAH sing 374 n n O4' C1' SAH sing 375 n n C3' O3' SAH sing 376 n n C3' C2' SAH sing 377 n n C3' H3' SAH sing 378 n n O3' HO3' SAH sing 379 n n C2' O2' SAH sing 380 n n C2' C1' SAH sing 381 n n C2' H2' SAH sing 382 n n O2' HO2' SAH sing 383 n n C1' N9 SAH sing 384 n n C1' H1' SAH sing 385 n n N9 C8 SAH sing 386 n y N9 C4 SAH sing 387 n y C8 N7 SAH doub 388 n y C8 H8 SAH sing 389 n n N7 C5 SAH sing 390 n y C5 C6 SAH sing 391 n y C5 C4 SAH doub 392 n y C6 N6 SAH sing 393 n n C6 N1 SAH doub 394 n y N6 HN61 SAH sing 395 n n N6 HN62 SAH sing 396 n n N1 C2 SAH sing 397 n y C2 N3 SAH doub 398 n y C2 H2 SAH sing 399 n n N3 C4 SAH sing 400 n y # _atom_sites.entry_id 5U18 _atom_sites.fract_transf_matrix[1][1] 0.015358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014432 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 401 1 SAH SAH . C 3 GET A 1 402 1 GET GET . D 4 HOH A 1 501 62 HOH HOH . D 4 HOH A 2 502 42 HOH HOH . D 4 HOH A 3 503 55 HOH HOH . D 4 HOH A 4 504 32 HOH HOH . D 4 HOH A 5 505 36 HOH HOH . D 4 HOH A 6 506 95 HOH HOH . D 4 HOH A 7 507 35 HOH HOH . D 4 HOH A 8 508 18 HOH HOH . D 4 HOH A 9 509 77 HOH HOH . D 4 HOH A 10 510 23 HOH HOH . D 4 HOH A 11 511 33 HOH HOH . D 4 HOH A 12 512 19 HOH HOH . D 4 HOH A 13 513 108 HOH HOH . D 4 HOH A 14 514 124 HOH HOH . D 4 HOH A 15 515 16 HOH HOH . D 4 HOH A 16 516 26 HOH HOH . D 4 HOH A 17 517 38 HOH HOH . D 4 HOH A 18 518 78 HOH HOH . D 4 HOH A 19 519 138 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . D 4 HOH A 21 521 4 HOH HOH . D 4 HOH A 22 522 3 HOH HOH . D 4 HOH A 23 523 15 HOH HOH . D 4 HOH A 24 524 72 HOH HOH . D 4 HOH A 25 525 53 HOH HOH . D 4 HOH A 26 526 74 HOH HOH . D 4 HOH A 27 527 37 HOH HOH . D 4 HOH A 28 528 97 HOH HOH . D 4 HOH A 29 529 22 HOH HOH . D 4 HOH A 30 530 39 HOH HOH . D 4 HOH A 31 531 6 HOH HOH . D 4 HOH A 32 532 92 HOH HOH . D 4 HOH A 33 533 118 HOH HOH . D 4 HOH A 34 534 21 HOH HOH . D 4 HOH A 35 535 69 HOH HOH . D 4 HOH A 36 536 17 HOH HOH . D 4 HOH A 37 537 64 HOH HOH . D 4 HOH A 38 538 88 HOH HOH . D 4 HOH A 39 539 84 HOH HOH . D 4 HOH A 40 540 45 HOH HOH . D 4 HOH A 41 541 114 HOH HOH . D 4 HOH A 42 542 140 HOH HOH . D 4 HOH A 43 543 30 HOH HOH . D 4 HOH A 44 544 7 HOH HOH . D 4 HOH A 45 545 47 HOH HOH . D 4 HOH A 46 546 25 HOH HOH . D 4 HOH A 47 547 51 HOH HOH . D 4 HOH A 48 548 54 HOH HOH . D 4 HOH A 49 549 29 HOH HOH . D 4 HOH A 50 550 52 HOH HOH . D 4 HOH A 51 551 107 HOH HOH . D 4 HOH A 52 552 120 HOH HOH . D 4 HOH A 53 553 27 HOH HOH . D 4 HOH A 54 554 11 HOH HOH . D 4 HOH A 55 555 1 HOH HOH . D 4 HOH A 56 556 59 HOH HOH . D 4 HOH A 57 557 68 HOH HOH . D 4 HOH A 58 558 129 HOH HOH . D 4 HOH A 59 559 14 HOH HOH . D 4 HOH A 60 560 106 HOH HOH . D 4 HOH A 61 561 87 HOH HOH . D 4 HOH A 62 562 10 HOH HOH . D 4 HOH A 63 563 2 HOH HOH . D 4 HOH A 64 564 13 HOH HOH . D 4 HOH A 65 565 8 HOH HOH . D 4 HOH A 66 566 58 HOH HOH . D 4 HOH A 67 567 93 HOH HOH . D 4 HOH A 68 568 132 HOH HOH . D 4 HOH A 69 569 133 HOH HOH . D 4 HOH A 70 570 82 HOH HOH . D 4 HOH A 71 571 9 HOH HOH . D 4 HOH A 72 572 104 HOH HOH . D 4 HOH A 73 573 139 HOH HOH . D 4 HOH A 74 574 44 HOH HOH . D 4 HOH A 75 575 12 HOH HOH . D 4 HOH A 76 576 41 HOH HOH . D 4 HOH A 77 577 49 HOH HOH . D 4 HOH A 78 578 70 HOH HOH . D 4 HOH A 79 579 46 HOH HOH . D 4 HOH A 80 580 56 HOH HOH . D 4 HOH A 81 581 71 HOH HOH . D 4 HOH A 82 582 61 HOH HOH . D 4 HOH A 83 583 110 HOH HOH . D 4 HOH A 84 584 102 HOH HOH . D 4 HOH A 85 585 75 HOH HOH . D 4 HOH A 86 586 103 HOH HOH . D 4 HOH A 87 587 145 HOH HOH . D 4 HOH A 88 588 134 HOH HOH . D 4 HOH A 89 589 117 HOH HOH . D 4 HOH A 90 590 76 HOH HOH . D 4 HOH A 91 591 115 HOH HOH . D 4 HOH A 92 592 24 HOH HOH . D 4 HOH A 93 593 81 HOH HOH . D 4 HOH A 94 594 122 HOH HOH . D 4 HOH A 95 595 5 HOH HOH . D 4 HOH A 96 596 60 HOH HOH . D 4 HOH A 97 597 100 HOH HOH . D 4 HOH A 98 598 57 HOH HOH . D 4 HOH A 99 599 43 HOH HOH . D 4 HOH A 100 600 83 HOH HOH . D 4 HOH A 101 601 146 HOH HOH . D 4 HOH A 102 602 28 HOH HOH . D 4 HOH A 103 603 99 HOH HOH . D 4 HOH A 104 604 109 HOH HOH . D 4 HOH A 105 605 86 HOH HOH . D 4 HOH A 106 606 48 HOH HOH . D 4 HOH A 107 607 85 HOH HOH . D 4 HOH A 108 608 63 HOH HOH . D 4 HOH A 109 609 130 HOH HOH . D 4 HOH A 110 610 65 HOH HOH . D 4 HOH A 111 611 136 HOH HOH . D 4 HOH A 112 612 112 HOH HOH . D 4 HOH A 113 613 79 HOH HOH . D 4 HOH A 114 614 116 HOH HOH . D 4 HOH A 115 615 67 HOH HOH . D 4 HOH A 116 616 34 HOH HOH . D 4 HOH A 117 617 66 HOH HOH . D 4 HOH A 118 618 135 HOH HOH . D 4 HOH A 119 619 31 HOH HOH . D 4 HOH A 120 620 123 HOH HOH . D 4 HOH A 121 621 144 HOH HOH . D 4 HOH A 122 622 126 HOH HOH . D 4 HOH A 123 623 101 HOH HOH . D 4 HOH A 124 624 96 HOH HOH . D 4 HOH A 125 625 113 HOH HOH . D 4 HOH A 126 626 119 HOH HOH . D 4 HOH A 127 627 50 HOH HOH . D 4 HOH A 128 628 105 HOH HOH . D 4 HOH A 129 629 91 HOH HOH . D 4 HOH A 130 630 143 HOH HOH . D 4 HOH A 131 631 127 HOH HOH . D 4 HOH A 132 632 141 HOH HOH . D 4 HOH A 133 633 142 HOH HOH . D 4 HOH A 134 634 40 HOH HOH . D 4 HOH A 135 635 94 HOH HOH . D 4 HOH A 136 636 80 HOH HOH . D 4 HOH A 137 637 147 HOH HOH . D 4 HOH A 138 638 128 HOH HOH . D 4 HOH A 139 639 98 HOH HOH . D 4 HOH A 140 640 121 HOH HOH . D 4 HOH A 141 641 90 HOH HOH . D 4 HOH A 142 642 111 HOH HOH . D 4 HOH A 143 643 137 HOH HOH . D 4 HOH A 144 644 131 HOH HOH . D 4 HOH A 145 645 73 HOH HOH . D 4 HOH A 146 646 89 HOH HOH . D 4 HOH A 147 647 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -2.685 -3.509 12.445 1 20.82 ? N SAH 401 A 1 HETATM 2 C CA SAH . . . B 2 -1.839 -4.43 13.212 1 22.31 ? CA SAH 401 A 1 HETATM 3 C CB SAH . . . B 2 -2.445 -4.799 14.556 1 18.35 ? CB SAH 401 A 1 HETATM 4 C CG SAH . . . B 2 -3.81 -5.464 14.461 1 20.45 ? CG SAH 401 A 1 HETATM 5 S SD SAH . . . B 2 -4.319 -6.041 16.097 1 20.29 ? SD SAH 401 A 1 HETATM 6 C C SAH . . . B 2 -1.673 -5.681 12.38 1 25.75 ? C SAH 401 A 1 HETATM 7 O O SAH . . . B 2 -2.319 -5.775 11.32 1 24.49 ? O SAH 401 A 1 HETATM 8 O OXT SAH . . . B 2 -0.918 -6.594 12.746 1 23.46 ? OXT SAH 401 A 1 HETATM 9 C C5' SAH . . . B 2 -5.695 -4.877 16.304 1 20.99 ? C5' SAH 401 A 1 HETATM 10 C C4' SAH . . . B 2 -5.323 -3.638 17.116 1 17.59 ? C4' SAH 401 A 1 HETATM 11 O O4' SAH . . . B 2 -6.486 -2.939 17.497 1 23.33 ? O4' SAH 401 A 1 HETATM 12 C C3' SAH . . . B 2 -4.62 -3.979 18.422 1 21.88 ? C3' SAH 401 A 1 HETATM 13 O O3' SAH . . . B 2 -3.376 -3.342 18.402 1 18.08 ? O3' SAH 401 A 1 HETATM 14 C C2' SAH . . . B 2 -5.478 -3.368 19.525 1 19.77 ? C2' SAH 401 A 1 HETATM 15 O O2' SAH . . . B 2 -4.705 -2.779 20.541 1 19.6 ? O2' SAH 401 A 1 HETATM 16 C C1' SAH . . . B 2 -6.228 -2.316 18.741 1 18.55 ? C1' SAH 401 A 1 HETATM 17 N N9 SAH . . . B 2 -7.41 -1.767 19.43 1 22.91 ? N9 SAH 401 A 1 HETATM 18 C C8 SAH . . . B 2 -8.339 -2.405 20.219 1 17.96 ? C8 SAH 401 A 1 HETATM 19 N N7 SAH . . . B 2 -9.225 -1.474 20.641 1 19.63 ? N7 SAH 401 A 1 HETATM 20 C C5 SAH . . . B 2 -8.879 -0.261 20.142 1 21 ? C5 SAH 401 A 1 HETATM 21 C C6 SAH . . . B 2 -9.418 1.027 20.254 1 25.12 ? C6 SAH 401 A 1 HETATM 22 N N6 SAH . . . B 2 -10.521 1.257 20.968 1 27.15 ? N6 SAH 401 A 1 HETATM 23 N N1 SAH . . . B 2 -8.811 2.087 19.605 1 21.28 ? N1 SAH 401 A 1 HETATM 24 C C2 SAH . . . B 2 -7.67 1.874 18.864 1 21.37 ? C2 SAH 401 A 1 HETATM 25 N N3 SAH . . . B 2 -7.141 0.606 18.766 1 21.41 ? N3 SAH 401 A 1 HETATM 26 C C4 SAH . . . B 2 -7.734 -0.44 19.385 1 21.16 ? C4 SAH 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #