data_5U18
#
_model_server_result.job_id            gvEub6A08rf4c_Nof7c0hQ 
_model_server_result.datetime_utc      '2024-11-13 20:32:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u18 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5U18 
#
_exptl.entry_id    5U18 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              496.552 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GENETICIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5U18 
_cell.length_a            65.113 
_cell.length_b            68.892 
_cell.length_c            69.29 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5U18 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H40 N4 O10' 
_chem_comp.formula_weight    496.552 
_chem_comp.id                GET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GENETICIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     G418 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 O11 GET sing 83 n n 
C11 C21 GET sing 84 n n 
C11 O51 GET sing 85 n n 
C11 H111 GET sing 86 n n 
O11 C42 GET sing 87 n n 
C21 N21 GET sing 88 n n 
C21 C31 GET sing 89 n n 
C21 H21 GET sing 90 n n 
N21 H211 GET sing 91 n n 
N21 H212 GET sing 92 n n 
C31 O31 GET sing 93 n n 
C31 C41 GET sing 94 n n 
C31 H311 GET sing 95 n n 
O31 H31 GET sing 96 n n 
C41 O41 GET sing 97 n n 
C41 C51 GET sing 98 n n 
C41 H411 GET sing 99 n n 
O41 H41 GET sing 100 n n 
C51 O51 GET sing 101 n n 
C51 C61 GET sing 102 n n 
C51 H511 GET sing 103 n n 
C61 O61 GET sing 104 n n 
C61 C71 GET sing 105 n n 
C61 H611 GET sing 106 n n 
O61 H61 GET sing 107 n n 
C71 H711 GET sing 108 n n 
C71 H712 GET sing 109 n n 
C71 H713 GET sing 110 n n 
C12 N12 GET sing 111 n n 
C12 C22 GET sing 112 n n 
C12 C62 GET sing 113 n n 
C12 H12 GET sing 114 n n 
N12 H121 GET sing 115 n n 
N12 H122 GET sing 116 n n 
C22 C32 GET sing 117 n n 
C22 H221 GET sing 118 n n 
C22 H222 GET sing 119 n n 
C32 N32 GET sing 120 n n 
C32 C42 GET sing 121 n n 
C32 H32 GET sing 122 n n 
N32 H321 GET sing 123 n n 
N32 H322 GET sing 124 n n 
C42 C52 GET sing 125 n n 
C42 H421 GET sing 126 n n 
C52 O52 GET sing 127 n n 
C52 C62 GET sing 128 n n 
C52 H521 GET sing 129 n n 
O52 H52 GET sing 130 n n 
C62 O62 GET sing 131 n n 
C62 H621 GET sing 132 n n 
O62 C13 GET sing 133 n n 
C13 C23 GET sing 134 n n 
C13 O53 GET sing 135 n n 
C13 H131 GET sing 136 n n 
C23 O23 GET sing 137 n n 
C23 C33 GET sing 138 n n 
C23 H231 GET sing 139 n n 
O23 H23 GET sing 140 n n 
C33 N33 GET sing 141 n n 
C33 C43 GET sing 142 n n 
C33 H331 GET sing 143 n n 
N33 C93 GET sing 144 n n 
N33 H33 GET sing 145 n n 
C93 H931 GET sing 146 n n 
C93 H932 GET sing 147 n n 
C93 H933 GET sing 148 n n 
C43 O43 GET sing 149 n n 
C43 C83 GET sing 150 n n 
C43 C53 GET sing 151 n n 
O43 H43 GET sing 152 n n 
C83 H831 GET sing 153 n n 
C83 H832 GET sing 154 n n 
C83 H833 GET sing 155 n n 
C53 O53 GET sing 156 n n 
C53 H531 GET sing 157 n n 
C53 H532 GET sing 158 n n 
#
_atom_sites.entry_id                     5U18 
_atom_sites.fract_transf_matrix[1][1]    0.015358 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014432 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAH A 1 401 1 SAH SAH . 
C 3 GET A 1 402 1 GET GET . 
D 4 HOH A 1 501 62 HOH HOH . 
D 4 HOH A 2 502 42 HOH HOH . 
D 4 HOH A 3 503 55 HOH HOH . 
D 4 HOH A 4 504 32 HOH HOH . 
D 4 HOH A 5 505 36 HOH HOH . 
D 4 HOH A 6 506 95 HOH HOH . 
D 4 HOH A 7 507 35 HOH HOH . 
D 4 HOH A 8 508 18 HOH HOH . 
D 4 HOH A 9 509 77 HOH HOH . 
D 4 HOH A 10 510 23 HOH HOH . 
D 4 HOH A 11 511 33 HOH HOH . 
D 4 HOH A 12 512 19 HOH HOH . 
D 4 HOH A 13 513 108 HOH HOH . 
D 4 HOH A 14 514 124 HOH HOH . 
D 4 HOH A 15 515 16 HOH HOH . 
D 4 HOH A 16 516 26 HOH HOH . 
D 4 HOH A 17 517 38 HOH HOH . 
D 4 HOH A 18 518 78 HOH HOH . 
D 4 HOH A 19 519 138 HOH HOH . 
D 4 HOH A 20 520 20 HOH HOH . 
D 4 HOH A 21 521 4 HOH HOH . 
D 4 HOH A 22 522 3 HOH HOH . 
D 4 HOH A 23 523 15 HOH HOH . 
D 4 HOH A 24 524 72 HOH HOH . 
D 4 HOH A 25 525 53 HOH HOH . 
D 4 HOH A 26 526 74 HOH HOH . 
D 4 HOH A 27 527 37 HOH HOH . 
D 4 HOH A 28 528 97 HOH HOH . 
D 4 HOH A 29 529 22 HOH HOH . 
D 4 HOH A 30 530 39 HOH HOH . 
D 4 HOH A 31 531 6 HOH HOH . 
D 4 HOH A 32 532 92 HOH HOH . 
D 4 HOH A 33 533 118 HOH HOH . 
D 4 HOH A 34 534 21 HOH HOH . 
D 4 HOH A 35 535 69 HOH HOH . 
D 4 HOH A 36 536 17 HOH HOH . 
D 4 HOH A 37 537 64 HOH HOH . 
D 4 HOH A 38 538 88 HOH HOH . 
D 4 HOH A 39 539 84 HOH HOH . 
D 4 HOH A 40 540 45 HOH HOH . 
D 4 HOH A 41 541 114 HOH HOH . 
D 4 HOH A 42 542 140 HOH HOH . 
D 4 HOH A 43 543 30 HOH HOH . 
D 4 HOH A 44 544 7 HOH HOH . 
D 4 HOH A 45 545 47 HOH HOH . 
D 4 HOH A 46 546 25 HOH HOH . 
D 4 HOH A 47 547 51 HOH HOH . 
D 4 HOH A 48 548 54 HOH HOH . 
D 4 HOH A 49 549 29 HOH HOH . 
D 4 HOH A 50 550 52 HOH HOH . 
D 4 HOH A 51 551 107 HOH HOH . 
D 4 HOH A 52 552 120 HOH HOH . 
D 4 HOH A 53 553 27 HOH HOH . 
D 4 HOH A 54 554 11 HOH HOH . 
D 4 HOH A 55 555 1 HOH HOH . 
D 4 HOH A 56 556 59 HOH HOH . 
D 4 HOH A 57 557 68 HOH HOH . 
D 4 HOH A 58 558 129 HOH HOH . 
D 4 HOH A 59 559 14 HOH HOH . 
D 4 HOH A 60 560 106 HOH HOH . 
D 4 HOH A 61 561 87 HOH HOH . 
D 4 HOH A 62 562 10 HOH HOH . 
D 4 HOH A 63 563 2 HOH HOH . 
D 4 HOH A 64 564 13 HOH HOH . 
D 4 HOH A 65 565 8 HOH HOH . 
D 4 HOH A 66 566 58 HOH HOH . 
D 4 HOH A 67 567 93 HOH HOH . 
D 4 HOH A 68 568 132 HOH HOH . 
D 4 HOH A 69 569 133 HOH HOH . 
D 4 HOH A 70 570 82 HOH HOH . 
D 4 HOH A 71 571 9 HOH HOH . 
D 4 HOH A 72 572 104 HOH HOH . 
D 4 HOH A 73 573 139 HOH HOH . 
D 4 HOH A 74 574 44 HOH HOH . 
D 4 HOH A 75 575 12 HOH HOH . 
D 4 HOH A 76 576 41 HOH HOH . 
D 4 HOH A 77 577 49 HOH HOH . 
D 4 HOH A 78 578 70 HOH HOH . 
D 4 HOH A 79 579 46 HOH HOH . 
D 4 HOH A 80 580 56 HOH HOH . 
D 4 HOH A 81 581 71 HOH HOH . 
D 4 HOH A 82 582 61 HOH HOH . 
D 4 HOH A 83 583 110 HOH HOH . 
D 4 HOH A 84 584 102 HOH HOH . 
D 4 HOH A 85 585 75 HOH HOH . 
D 4 HOH A 86 586 103 HOH HOH . 
D 4 HOH A 87 587 145 HOH HOH . 
D 4 HOH A 88 588 134 HOH HOH . 
D 4 HOH A 89 589 117 HOH HOH . 
D 4 HOH A 90 590 76 HOH HOH . 
D 4 HOH A 91 591 115 HOH HOH . 
D 4 HOH A 92 592 24 HOH HOH . 
D 4 HOH A 93 593 81 HOH HOH . 
D 4 HOH A 94 594 122 HOH HOH . 
D 4 HOH A 95 595 5 HOH HOH . 
D 4 HOH A 96 596 60 HOH HOH . 
D 4 HOH A 97 597 100 HOH HOH . 
D 4 HOH A 98 598 57 HOH HOH . 
D 4 HOH A 99 599 43 HOH HOH . 
D 4 HOH A 100 600 83 HOH HOH . 
D 4 HOH A 101 601 146 HOH HOH . 
D 4 HOH A 102 602 28 HOH HOH . 
D 4 HOH A 103 603 99 HOH HOH . 
D 4 HOH A 104 604 109 HOH HOH . 
D 4 HOH A 105 605 86 HOH HOH . 
D 4 HOH A 106 606 48 HOH HOH . 
D 4 HOH A 107 607 85 HOH HOH . 
D 4 HOH A 108 608 63 HOH HOH . 
D 4 HOH A 109 609 130 HOH HOH . 
D 4 HOH A 110 610 65 HOH HOH . 
D 4 HOH A 111 611 136 HOH HOH . 
D 4 HOH A 112 612 112 HOH HOH . 
D 4 HOH A 113 613 79 HOH HOH . 
D 4 HOH A 114 614 116 HOH HOH . 
D 4 HOH A 115 615 67 HOH HOH . 
D 4 HOH A 116 616 34 HOH HOH . 
D 4 HOH A 117 617 66 HOH HOH . 
D 4 HOH A 118 618 135 HOH HOH . 
D 4 HOH A 119 619 31 HOH HOH . 
D 4 HOH A 120 620 123 HOH HOH . 
D 4 HOH A 121 621 144 HOH HOH . 
D 4 HOH A 122 622 126 HOH HOH . 
D 4 HOH A 123 623 101 HOH HOH . 
D 4 HOH A 124 624 96 HOH HOH . 
D 4 HOH A 125 625 113 HOH HOH . 
D 4 HOH A 126 626 119 HOH HOH . 
D 4 HOH A 127 627 50 HOH HOH . 
D 4 HOH A 128 628 105 HOH HOH . 
D 4 HOH A 129 629 91 HOH HOH . 
D 4 HOH A 130 630 143 HOH HOH . 
D 4 HOH A 131 631 127 HOH HOH . 
D 4 HOH A 132 632 141 HOH HOH . 
D 4 HOH A 133 633 142 HOH HOH . 
D 4 HOH A 134 634 40 HOH HOH . 
D 4 HOH A 135 635 94 HOH HOH . 
D 4 HOH A 136 636 80 HOH HOH . 
D 4 HOH A 137 637 147 HOH HOH . 
D 4 HOH A 138 638 128 HOH HOH . 
D 4 HOH A 139 639 98 HOH HOH . 
D 4 HOH A 140 640 121 HOH HOH . 
D 4 HOH A 141 641 90 HOH HOH . 
D 4 HOH A 142 642 111 HOH HOH . 
D 4 HOH A 143 643 137 HOH HOH . 
D 4 HOH A 144 644 131 HOH HOH . 
D 4 HOH A 145 645 73 HOH HOH . 
D 4 HOH A 146 646 89 HOH HOH . 
D 4 HOH A 147 647 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 GET . . . C 3 -4.476 -18.164 17.412 1 36.49 ? C11 GET 402 A 1 
HETATM 2 O O11 GET . . . C 3 -4.176 -17.177 16.458 1 30.52 ? O11 GET 402 A 1 
HETATM 3 C C21 GET . . . C 3 -4.173 -17.722 18.839 1 30.28 ? C21 GET 402 A 1 
HETATM 4 N N21 GET . . . C 3 -4.786 -16.481 19.087 1 31.11 ? N21 GET 402 A 1 
HETATM 5 C C31 GET . . . C 3 -2.68 -17.656 19.127 1 28.01 ? C31 GET 402 A 1 
HETATM 6 O O31 GET . . . C 3 -2.484 -17.41 20.485 1 27.16 ? O31 GET 402 A 1 
HETATM 7 C C41 GET . . . C 3 -2.046 -18.988 18.699 1 29.74 ? C41 GET 402 A 1 
HETATM 8 O O41 GET . . . C 3 -0.665 -19.045 18.986 1 27.94 ? O41 GET 402 A 1 
HETATM 9 C C51 GET . . . C 3 -2.38 -19.257 17.231 1 27.99 ? C51 GET 402 A 1 
HETATM 10 O O51 GET . . . C 3 -3.768 -19.359 17.1 1 33.46 ? O51 GET 402 A 1 
HETATM 11 C C61 GET . . . C 3 -1.793 -20.513 16.608 1 36.9 ? C61 GET 402 A 1 
HETATM 12 O O61 GET . . . C 3 -1.99 -20.499 15.19 1 35.24 ? O61 GET 402 A 1 
HETATM 13 C C71 GET . . . C 3 -2.299 -21.795 17.276 1 32.11 ? C71 GET 402 A 1 
HETATM 14 C C12 GET . . . C 3 -5.928 -15.757 12.949 1 31.55 ? C12 GET 402 A 1 
HETATM 15 N N12 GET . . . C 3 -6.87 -15.418 11.92 1 25.66 ? N12 GET 402 A 1 
HETATM 16 C C22 GET . . . C 3 -5.791 -17.255 13.063 1 33.37 ? C22 GET 402 A 1 
HETATM 17 C C32 GET . . . C 3 -4.848 -17.711 14.195 1 35.99 ? C32 GET 402 A 1 
HETATM 18 N N32 GET . . . C 3 -4.9 -19.154 14.314 1 32.35 ? N32 GET 402 A 1 
HETATM 19 C C42 GET . . . C 3 -5.197 -17.047 15.535 1 32.76 ? C42 GET 402 A 1 
HETATM 20 C C52 GET . . . C 3 -5.361 -15.561 15.397 1 31 ? C52 GET 402 A 1 
HETATM 21 O O52 GET . . . C 3 -5.671 -15.075 16.653 1 26.27 ? O52 GET 402 A 1 
HETATM 22 C C62 GET . . . C 3 -6.309 -15.136 14.283 1 27.97 ? C62 GET 402 A 1 
HETATM 23 O O62 GET . . . C 3 -6.151 -13.751 14.108 1 29.85 ? O62 GET 402 A 1 
HETATM 24 C C13 GET . . . C 3 -7.36 -13.022 14.131 1 26.37 ? C13 GET 402 A 1 
HETATM 25 C C23 GET . . . C 3 -7.258 -11.58 13.592 1 23.35 ? C23 GET 402 A 1 
HETATM 26 O O23 GET . . . C 3 -6.514 -11.522 12.378 1 25.43 ? O23 GET 402 A 1 
HETATM 27 C C33 GET . . . C 3 -6.654 -10.601 14.591 1 22.76 ? C33 GET 402 A 1 
HETATM 28 N N33 GET . . . C 3 -7.084 -9.323 14.164 1 23.06 ? N33 GET 402 A 1 
HETATM 29 C C93 GET . . . C 3 -6.353 -8.147 14.533 1 24.46 ? C93 GET 402 A 1 
HETATM 30 C C43 GET . . . C 3 -7.112 -10.859 16.025 1 28.94 ? C43 GET 402 A 1 
HETATM 31 O O43 GET . . . C 3 -8.381 -10.282 16.195 1 28.13 ? O43 GET 402 A 1 
HETATM 32 C C83 GET . . . C 3 -6.226 -10.224 17.056 1 27.8 ? C83 GET 402 A 1 
HETATM 33 C C53 GET . . . C 3 -7.208 -12.333 16.397 1 25.93 ? C53 GET 402 A 1 
HETATM 34 O O53 GET . . . C 3 -7.859 -13.109 15.434 1 27.72 ? O53 GET 402 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#