data_5U1E # _model_server_result.job_id sIduX3YohQtVuOnGmbZkOg _model_server_result.datetime_utc '2024-11-28 18:17:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u1e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5U1E # _exptl.entry_id 5U1E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U1E _cell.length_a 66.718 _cell.length_b 68.168 _cell.length_c 69.799 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U1E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 349 n n N HN1 SAH sing 350 n n N HN2 SAH sing 351 n n CA CB SAH sing 352 n n CA C SAH sing 353 n n CA HA SAH sing 354 n n CB CG SAH sing 355 n n CB HB1 SAH sing 356 n n CB HB2 SAH sing 357 n n CG SD SAH sing 358 n n CG HG1 SAH sing 359 n n CG HG2 SAH sing 360 n n SD C5' SAH sing 361 n n C O SAH doub 362 n n C OXT SAH sing 363 n n OXT HXT SAH sing 364 n n C5' C4' SAH sing 365 n n C5' "H5'1" SAH sing 366 n n C5' "H5'2" SAH sing 367 n n C4' O4' SAH sing 368 n n C4' C3' SAH sing 369 n n C4' H4' SAH sing 370 n n O4' C1' SAH sing 371 n n C3' O3' SAH sing 372 n n C3' C2' SAH sing 373 n n C3' H3' SAH sing 374 n n O3' HO3' SAH sing 375 n n C2' O2' SAH sing 376 n n C2' C1' SAH sing 377 n n C2' H2' SAH sing 378 n n O2' HO2' SAH sing 379 n n C1' N9 SAH sing 380 n n C1' H1' SAH sing 381 n n N9 C8 SAH sing 382 n y N9 C4 SAH sing 383 n y C8 N7 SAH doub 384 n y C8 H8 SAH sing 385 n n N7 C5 SAH sing 386 n y C5 C6 SAH sing 387 n y C5 C4 SAH doub 388 n y C6 N6 SAH sing 389 n n C6 N1 SAH doub 390 n y N6 HN61 SAH sing 391 n n N6 HN62 SAH sing 392 n n N1 C2 SAH sing 393 n y C2 N3 SAH doub 394 n y C2 H2 SAH sing 395 n n N3 C4 SAH sing 396 n y # _atom_sites.entry_id 5U1E _atom_sites.fract_transf_matrix[1][1] 0.014988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9CS A 1 401 1 9CS LIG . C 3 SAH A 1 402 1 SAH SAM . D 4 HOH A 1 501 54 HOH HOH . D 4 HOH A 2 502 42 HOH HOH . D 4 HOH A 3 503 97 HOH HOH . D 4 HOH A 4 504 108 HOH HOH . D 4 HOH A 5 505 114 HOH HOH . D 4 HOH A 6 506 72 HOH HOH . D 4 HOH A 7 507 22 HOH HOH . D 4 HOH A 8 508 104 HOH HOH . D 4 HOH A 9 509 17 HOH HOH . D 4 HOH A 10 510 52 HOH HOH . D 4 HOH A 11 511 24 HOH HOH . D 4 HOH A 12 512 60 HOH HOH . D 4 HOH A 13 513 25 HOH HOH . D 4 HOH A 14 514 78 HOH HOH . D 4 HOH A 15 515 71 HOH HOH . D 4 HOH A 16 516 38 HOH HOH . D 4 HOH A 17 517 8 HOH HOH . D 4 HOH A 18 518 2 HOH HOH . D 4 HOH A 19 519 70 HOH HOH . D 4 HOH A 20 520 112 HOH HOH . D 4 HOH A 21 521 12 HOH HOH . D 4 HOH A 22 522 27 HOH HOH . D 4 HOH A 23 523 18 HOH HOH . D 4 HOH A 24 524 120 HOH HOH . D 4 HOH A 25 525 21 HOH HOH . D 4 HOH A 26 526 73 HOH HOH . D 4 HOH A 27 527 102 HOH HOH . D 4 HOH A 28 528 32 HOH HOH . D 4 HOH A 29 529 14 HOH HOH . D 4 HOH A 30 530 11 HOH HOH . D 4 HOH A 31 531 75 HOH HOH . D 4 HOH A 32 532 20 HOH HOH . D 4 HOH A 33 533 41 HOH HOH . D 4 HOH A 34 534 56 HOH HOH . D 4 HOH A 35 535 9 HOH HOH . D 4 HOH A 36 536 103 HOH HOH . D 4 HOH A 37 537 6 HOH HOH . D 4 HOH A 38 538 4 HOH HOH . D 4 HOH A 39 539 39 HOH HOH . D 4 HOH A 40 540 37 HOH HOH . D 4 HOH A 41 541 81 HOH HOH . D 4 HOH A 42 542 15 HOH HOH . D 4 HOH A 43 543 122 HOH HOH . D 4 HOH A 44 544 92 HOH HOH . D 4 HOH A 45 545 13 HOH HOH . D 4 HOH A 46 546 1 HOH HOH . D 4 HOH A 47 547 19 HOH HOH . D 4 HOH A 48 548 5 HOH HOH . D 4 HOH A 49 549 80 HOH HOH . D 4 HOH A 50 550 85 HOH HOH . D 4 HOH A 51 551 26 HOH HOH . D 4 HOH A 52 552 49 HOH HOH . D 4 HOH A 53 553 77 HOH HOH . D 4 HOH A 54 554 55 HOH HOH . D 4 HOH A 55 555 62 HOH HOH . D 4 HOH A 56 556 16 HOH HOH . D 4 HOH A 57 557 50 HOH HOH . D 4 HOH A 58 558 3 HOH HOH . D 4 HOH A 59 559 36 HOH HOH . D 4 HOH A 60 560 40 HOH HOH . D 4 HOH A 61 561 87 HOH HOH . D 4 HOH A 62 562 43 HOH HOH . D 4 HOH A 63 563 123 HOH HOH . D 4 HOH A 64 564 53 HOH HOH . D 4 HOH A 65 565 79 HOH HOH . D 4 HOH A 66 566 126 HOH HOH . D 4 HOH A 67 567 10 HOH HOH . D 4 HOH A 68 568 83 HOH HOH . D 4 HOH A 69 569 35 HOH HOH . D 4 HOH A 70 570 90 HOH HOH . D 4 HOH A 71 571 30 HOH HOH . D 4 HOH A 72 572 23 HOH HOH . D 4 HOH A 73 573 51 HOH HOH . D 4 HOH A 74 574 58 HOH HOH . D 4 HOH A 75 575 57 HOH HOH . D 4 HOH A 76 576 117 HOH HOH . D 4 HOH A 77 577 101 HOH HOH . D 4 HOH A 78 578 124 HOH HOH . D 4 HOH A 79 579 44 HOH HOH . D 4 HOH A 80 580 48 HOH HOH . D 4 HOH A 81 581 93 HOH HOH . D 4 HOH A 82 582 69 HOH HOH . D 4 HOH A 83 583 68 HOH HOH . D 4 HOH A 84 584 116 HOH HOH . D 4 HOH A 85 585 84 HOH HOH . D 4 HOH A 86 586 61 HOH HOH . D 4 HOH A 87 587 74 HOH HOH . D 4 HOH A 88 588 95 HOH HOH . D 4 HOH A 89 589 28 HOH HOH . D 4 HOH A 90 590 111 HOH HOH . D 4 HOH A 91 591 33 HOH HOH . D 4 HOH A 92 592 45 HOH HOH . D 4 HOH A 93 593 29 HOH HOH . D 4 HOH A 94 594 110 HOH HOH . D 4 HOH A 95 595 118 HOH HOH . D 4 HOH A 96 596 105 HOH HOH . D 4 HOH A 97 597 59 HOH HOH . D 4 HOH A 98 598 67 HOH HOH . D 4 HOH A 99 599 7 HOH HOH . D 4 HOH A 100 600 96 HOH HOH . D 4 HOH A 101 601 46 HOH HOH . D 4 HOH A 102 602 47 HOH HOH . D 4 HOH A 103 603 100 HOH HOH . D 4 HOH A 104 604 125 HOH HOH . D 4 HOH A 105 605 63 HOH HOH . D 4 HOH A 106 606 82 HOH HOH . D 4 HOH A 107 607 91 HOH HOH . D 4 HOH A 108 608 113 HOH HOH . D 4 HOH A 109 609 121 HOH HOH . D 4 HOH A 110 610 109 HOH HOH . D 4 HOH A 111 611 64 HOH HOH . D 4 HOH A 112 612 106 HOH HOH . D 4 HOH A 113 613 86 HOH HOH . D 4 HOH A 114 614 94 HOH HOH . D 4 HOH A 115 615 98 HOH HOH . D 4 HOH A 116 616 115 HOH HOH . D 4 HOH A 117 617 99 HOH HOH . D 4 HOH A 118 618 88 HOH HOH . D 4 HOH A 119 619 66 HOH HOH . D 4 HOH A 120 620 119 HOH HOH . D 4 HOH A 121 621 89 HOH HOH . D 4 HOH A 122 622 107 HOH HOH . D 4 HOH A 123 623 34 HOH HOH . D 4 HOH A 124 624 76 HOH HOH . D 4 HOH A 125 625 65 HOH HOH . D 4 HOH A 126 626 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 -2.798 -3.655 12.555 1 26.92 ? N SAH 402 A 1 HETATM 2 C CA SAH . . . C 3 -1.99 -4.647 13.263 1 22.81 ? CA SAH 402 A 1 HETATM 3 C CB SAH . . . C 3 -2.712 -5.038 14.556 1 24.71 ? CB SAH 402 A 1 HETATM 4 C CG SAH . . . C 3 -4.078 -5.714 14.385 1 29.54 ? CG SAH 402 A 1 HETATM 5 S SD SAH . . . C 3 -4.71 -6.511 15.895 1 26.49 ? SD SAH 402 A 1 HETATM 6 C C SAH . . . C 3 -1.691 -5.879 12.394 1 26.41 ? C SAH 402 A 1 HETATM 7 O O SAH . . . C 3 -2.323 -6.093 11.351 1 26.81 ? O SAH 402 A 1 HETATM 8 O OXT SAH . . . C 3 -0.816 -6.697 12.706 1 24.25 ? OXT SAH 402 A 1 HETATM 9 C C5' SAH . . . C 3 -5.926 -5.295 16.488 1 28.61 ? C5' SAH 402 A 1 HETATM 10 C C4' SAH . . . C 3 -5.397 -3.99 17.101 1 26.61 ? C4' SAH 402 A 1 HETATM 11 O O4' SAH . . . C 3 -6.52 -3.196 17.453 1 25.7 ? O4' SAH 402 A 1 HETATM 12 C C3' SAH . . . C 3 -4.605 -4.225 18.395 1 26.93 ? C3' SAH 402 A 1 HETATM 13 O O3' SAH . . . C 3 -3.311 -3.653 18.361 1 24.97 ? O3' SAH 402 A 1 HETATM 14 C C2' SAH . . . C 3 -5.421 -3.554 19.48 1 27.24 ? C2' SAH 402 A 1 HETATM 15 O O2' SAH . . . C 3 -4.613 -3.004 20.507 1 23.86 ? O2' SAH 402 A 1 HETATM 16 C C1' SAH . . . C 3 -6.214 -2.543 18.67 1 25.72 ? C1' SAH 402 A 1 HETATM 17 N N9 SAH . . . C 3 -7.366 -1.991 19.411 1 30.02 ? N9 SAH 402 A 1 HETATM 18 C C8 SAH . . . C 3 -8.219 -2.644 20.262 1 27.54 ? C8 SAH 402 A 1 HETATM 19 N N7 SAH . . . C 3 -9.103 -1.728 20.745 1 30.44 ? N7 SAH 402 A 1 HETATM 20 C C5 SAH . . . C 3 -8.824 -0.505 20.234 1 26.63 ? C5 SAH 402 A 1 HETATM 21 C C6 SAH . . . C 3 -9.402 0.765 20.406 1 30.34 ? C6 SAH 402 A 1 HETATM 22 N N6 SAH . . . C 3 -10.454 0.947 21.208 1 29.46 ? N6 SAH 402 A 1 HETATM 23 N N1 SAH . . . C 3 -8.868 1.845 19.738 1 26.21 ? N1 SAH 402 A 1 HETATM 24 C C2 SAH . . . C 3 -7.773 1.665 18.925 1 27.77 ? C2 SAH 402 A 1 HETATM 25 N N3 SAH . . . C 3 -7.211 0.41 18.756 1 24.05 ? N3 SAH 402 A 1 HETATM 26 C C4 SAH . . . C 3 -7.724 -0.657 19.405 1 24.5 ? C4 SAH 402 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #