data_5U1R # _model_server_result.job_id pYnnSFtXLOiO_T_a8kQSkg _model_server_result.datetime_utc '2024-11-02 05:22:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":302}' # _entry.id 5U1R # _exptl.entry_id 5U1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.38 _cell.angle_gamma 90 _cell.entry_id 5U1R _cell.length_a 212.571 _cell.length_b 69.65 _cell.length_c 142.85 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,S,T,U,V 1 1 E,F,G,H,O,P,Q,R,W,X,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 L N N ? 7 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 C CYS 98 1_555 A SG CYS 162 C CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 201 C CYS 200 1_555 A SG CYS 257 C CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 B SG CYS 22 D CYS 22 1_555 B SG CYS 88 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 132 D CYS 132 1_555 B SG CYS 182 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 157 D CYS 157 1_555 C SG CYS 172 E CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 23 E CYS 23 1_555 C SG CYS 91 E CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 C SG CYS 146 E CYS 146 1_555 C SG CYS 211 E CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 D SG CYS 26 F CYS 25 1_555 D SG CYS 81 F CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 E SG CYS 99 A CYS 98 1_555 E SG CYS 162 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 E SG CYS 201 A CYS 200 1_555 E SG CYS 257 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 F SG CYS 22 B CYS 22 1_555 F SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 F SG CYS 132 B CYS 132 1_555 F SG CYS 182 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 F SG CYS 157 B CYS 157 1_555 G SG CYS 172 G CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 G SG CYS 23 G CYS 23 1_555 G SG CYS 91 G CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf15 G SG CYS 146 G CYS 146 1_555 G SG CYS 211 G CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf16 H SG CYS 26 H CYS 25 1_555 H SG CYS 81 H CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A O PRO 182 C PRO 181 1_555 I NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? metalc ? metalc2 C OH TYR 47 E TYR 47 1_555 N NA NA . E NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc3 C O PRO 61 E PRO 61 1_555 N NA NA . E NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc4 C O TYR 64 E TYR 64 1_555 N NA NA . E NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc5 N NA NA . E NA 301 1_555 U O HOH . E HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc6 N NA NA . E NA 301 1_555 U O HOH . E HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 166 n n C1 C2 GOL sing 167 n n C1 H11 GOL sing 168 n n C1 H12 GOL sing 169 n n O1 HO1 GOL sing 170 n n C2 O2 GOL sing 171 n n C2 C3 GOL sing 172 n n C2 H2 GOL sing 173 n n O2 HO2 GOL sing 174 n n C3 O3 GOL sing 175 n n C3 H31 GOL sing 176 n n C3 H32 GOL sing 177 n n O3 HO3 GOL sing 178 n n # _atom_sites.entry_id 5U1R _atom_sites.fract_transf_matrix[1][1] 0.004704 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001119 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 NA C 1 301 4 NA NA . J 6 ACT C 1 302 3 ACT ACT . K 7 GOL C 1 303 1 GOL GOL . L 7 GOL C 1 304 2 GOL GOL . M 8 DIF C 1 305 2 DIF DFC . N 5 NA E 1 301 5 NA NA . O 6 ACT A 1 301 2 ACT ACT . P 7 GOL A 1 302 3 GOL GOL . Q 8 DIF A 1 303 1 DIF DFC . R 6 ACT B 1 301 1 ACT ACT . S 9 HOH C 1 401 73 HOH HOH . S 9 HOH C 2 402 163 HOH HOH . S 9 HOH C 3 403 161 HOH HOH . S 9 HOH C 4 404 19 HOH HOH . S 9 HOH C 5 405 117 HOH HOH . S 9 HOH C 6 406 131 HOH HOH . S 9 HOH C 7 407 59 HOH HOH . S 9 HOH C 8 408 61 HOH HOH . S 9 HOH C 9 409 96 HOH HOH . S 9 HOH C 10 410 82 HOH HOH . S 9 HOH C 11 411 38 HOH HOH . S 9 HOH C 12 412 6 HOH HOH . S 9 HOH C 13 413 128 HOH HOH . S 9 HOH C 14 414 110 HOH HOH . S 9 HOH C 15 415 78 HOH HOH . S 9 HOH C 16 416 76 HOH HOH . S 9 HOH C 17 417 140 HOH HOH . S 9 HOH C 18 418 113 HOH HOH . S 9 HOH C 19 419 55 HOH HOH . S 9 HOH C 20 420 44 HOH HOH . T 9 HOH D 1 301 106 HOH HOH . T 9 HOH D 2 302 60 HOH HOH . T 9 HOH D 3 303 105 HOH HOH . T 9 HOH D 4 304 94 HOH HOH . T 9 HOH D 5 305 101 HOH HOH . T 9 HOH D 6 306 79 HOH HOH . T 9 HOH D 7 307 103 HOH HOH . T 9 HOH D 8 308 77 HOH HOH . T 9 HOH D 9 309 102 HOH HOH . T 9 HOH D 10 310 31 HOH HOH . T 9 HOH D 11 311 25 HOH HOH . T 9 HOH D 12 312 138 HOH HOH . T 9 HOH D 13 313 1 HOH HOH . T 9 HOH D 14 314 118 HOH HOH . T 9 HOH D 15 315 122 HOH HOH . T 9 HOH D 16 316 145 HOH HOH . T 9 HOH D 17 317 16 HOH HOH . T 9 HOH D 18 318 42 HOH HOH . T 9 HOH D 19 319 58 HOH HOH . T 9 HOH D 20 320 39 HOH HOH . T 9 HOH D 21 321 50 HOH HOH . T 9 HOH D 22 322 98 HOH HOH . T 9 HOH D 23 323 164 HOH HOH . T 9 HOH D 24 324 35 HOH HOH . T 9 HOH D 25 325 56 HOH HOH . T 9 HOH D 26 326 71 HOH HOH . T 9 HOH D 27 327 10 HOH HOH . T 9 HOH D 28 328 119 HOH HOH . T 9 HOH D 29 329 124 HOH HOH . T 9 HOH D 30 330 127 HOH HOH . T 9 HOH D 31 331 65 HOH HOH . T 9 HOH D 32 332 121 HOH HOH . T 9 HOH D 33 333 37 HOH HOH . T 9 HOH D 34 334 132 HOH HOH . T 9 HOH D 35 335 158 HOH HOH . U 9 HOH E 1 401 47 HOH HOH . U 9 HOH E 2 402 57 HOH HOH . U 9 HOH E 3 403 24 HOH HOH . U 9 HOH E 4 404 15 HOH HOH . U 9 HOH E 5 405 120 HOH HOH . U 9 HOH E 6 406 30 HOH HOH . U 9 HOH E 7 407 26 HOH HOH . U 9 HOH E 8 408 168 HOH HOH . U 9 HOH E 9 409 5 HOH HOH . U 9 HOH E 10 410 154 HOH HOH . U 9 HOH E 11 411 90 HOH HOH . U 9 HOH E 12 412 46 HOH HOH . U 9 HOH E 13 413 7 HOH HOH . U 9 HOH E 14 414 45 HOH HOH . U 9 HOH E 15 415 109 HOH HOH . U 9 HOH E 16 416 29 HOH HOH . U 9 HOH E 17 417 125 HOH HOH . U 9 HOH E 18 418 2 HOH HOH . U 9 HOH E 19 419 49 HOH HOH . U 9 HOH E 20 420 146 HOH HOH . U 9 HOH E 21 421 130 HOH HOH . U 9 HOH E 22 422 23 HOH HOH . U 9 HOH E 23 423 36 HOH HOH . U 9 HOH E 24 424 112 HOH HOH . U 9 HOH E 25 425 104 HOH HOH . U 9 HOH E 26 426 166 HOH HOH . U 9 HOH E 27 427 48 HOH HOH . U 9 HOH E 28 428 20 HOH HOH . U 9 HOH E 29 429 74 HOH HOH . U 9 HOH E 30 430 151 HOH HOH . U 9 HOH E 31 431 70 HOH HOH . U 9 HOH E 32 432 149 HOH HOH . V 9 HOH F 1 101 144 HOH HOH . V 9 HOH F 2 102 129 HOH HOH . W 9 HOH A 1 401 52 HOH HOH . W 9 HOH A 2 402 80 HOH HOH . W 9 HOH A 3 403 150 HOH HOH . W 9 HOH A 4 404 85 HOH HOH . W 9 HOH A 5 405 95 HOH HOH . W 9 HOH A 6 406 152 HOH HOH . W 9 HOH A 7 407 9 HOH HOH . W 9 HOH A 8 408 147 HOH HOH . W 9 HOH A 9 409 17 HOH HOH . W 9 HOH A 10 410 171 HOH HOH . W 9 HOH A 11 411 91 HOH HOH . W 9 HOH A 12 412 51 HOH HOH . W 9 HOH A 13 413 67 HOH HOH . W 9 HOH A 14 414 153 HOH HOH . W 9 HOH A 15 415 108 HOH HOH . W 9 HOH A 16 416 136 HOH HOH . W 9 HOH A 17 417 167 HOH HOH . W 9 HOH A 18 418 89 HOH HOH . W 9 HOH A 19 419 165 HOH HOH . W 9 HOH A 20 420 66 HOH HOH . W 9 HOH A 21 421 34 HOH HOH . W 9 HOH A 22 422 12 HOH HOH . W 9 HOH A 23 423 86 HOH HOH . W 9 HOH A 24 424 111 HOH HOH . W 9 HOH A 25 425 93 HOH HOH . W 9 HOH A 26 426 28 HOH HOH . W 9 HOH A 27 427 4 HOH HOH . W 9 HOH A 28 428 54 HOH HOH . W 9 HOH A 29 429 63 HOH HOH . W 9 HOH A 30 430 169 HOH HOH . W 9 HOH A 31 431 107 HOH HOH . W 9 HOH A 32 432 143 HOH HOH . W 9 HOH A 33 433 135 HOH HOH . W 9 HOH A 34 434 81 HOH HOH . W 9 HOH A 35 435 133 HOH HOH . W 9 HOH A 36 436 139 HOH HOH . W 9 HOH A 37 437 137 HOH HOH . X 9 HOH B 1 401 156 HOH HOH . X 9 HOH B 2 402 72 HOH HOH . X 9 HOH B 3 403 99 HOH HOH . X 9 HOH B 4 404 13 HOH HOH . X 9 HOH B 5 405 83 HOH HOH . X 9 HOH B 6 406 88 HOH HOH . X 9 HOH B 7 407 173 HOH HOH . X 9 HOH B 8 408 172 HOH HOH . X 9 HOH B 9 409 8 HOH HOH . X 9 HOH B 10 410 68 HOH HOH . X 9 HOH B 11 411 11 HOH HOH . X 9 HOH B 12 412 162 HOH HOH . X 9 HOH B 13 413 43 HOH HOH . X 9 HOH B 14 414 159 HOH HOH . Y 9 HOH G 1 301 27 HOH HOH . Y 9 HOH G 2 302 141 HOH HOH . Y 9 HOH G 3 303 116 HOH HOH . Y 9 HOH G 4 304 22 HOH HOH . Y 9 HOH G 5 305 14 HOH HOH . Y 9 HOH G 6 306 21 HOH HOH . Y 9 HOH G 7 307 69 HOH HOH . Y 9 HOH G 8 308 40 HOH HOH . Y 9 HOH G 9 309 92 HOH HOH . Y 9 HOH G 10 310 32 HOH HOH . Y 9 HOH G 11 311 41 HOH HOH . Y 9 HOH G 12 312 64 HOH HOH . Y 9 HOH G 13 313 142 HOH HOH . Y 9 HOH G 14 314 126 HOH HOH . Y 9 HOH G 15 315 84 HOH HOH . Y 9 HOH G 16 316 53 HOH HOH . Y 9 HOH G 17 317 155 HOH HOH . Y 9 HOH G 18 318 134 HOH HOH . Y 9 HOH G 19 319 75 HOH HOH . Y 9 HOH G 20 320 97 HOH HOH . Y 9 HOH G 21 321 114 HOH HOH . Y 9 HOH G 22 322 170 HOH HOH . Z 9 HOH H 1 101 160 HOH HOH . Z 9 HOH H 2 102 87 HOH HOH . Z 9 HOH H 3 103 33 HOH HOH . Z 9 HOH H 4 104 3 HOH HOH . Z 9 HOH H 5 105 157 HOH HOH . Z 9 HOH H 6 106 100 HOH HOH . Z 9 HOH H 7 107 18 HOH HOH . Z 9 HOH H 8 108 62 HOH HOH . Z 9 HOH H 9 109 148 HOH HOH . Z 9 HOH H 10 110 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . P 7 20.277 32.542 226.679 1 43.23 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . P 7 19.763 33.317 225.617 1 36.39 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . P 7 21.269 33.358 227.504 1 44.57 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . P 7 20.677 33.734 228.725 1 43.08 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . P 7 22.497 32.509 227.798 1 49.26 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . P 7 23.449 33.287 228.486 1 58.01 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #