data_5U1U # _model_server_result.job_id qvfVTaQYGTr-Dh4f381p9Q _model_server_result.datetime_utc '2024-12-01 06:43:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u1u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5U1U # _exptl.entry_id 5U1U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.555 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-{(1R)-1-[N''-cyano-N'-(quinolin-5-yl)carbamimidamido]-2,2-dimethylpropyl}-2-(3,4-dimethoxyphenyl)acetamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U1U _cell.length_a 169.566 _cell.length_b 169.566 _cell.length_c 169.566 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 119 1_555 A SG CYS 148 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf2 A SG CYS 109 A CYS 129 1_555 A SG CYS 132 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 115 A CYS 135 1_555 A SG CYS 142 A CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 196 A CYS 216 1_555 A SG CYS 206 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 240 A CYS 260 1_555 A SG CYS 249 A CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 167 A ASN 187 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 182 A ASN 202 1_555 C C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 193 A ASN 213 1_555 D C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C26 H30 N6 O3' _chem_comp.formula_weight 474.555 _chem_comp.id 7S4 _chem_comp.mon_nstd_flag . _chem_comp.name "N-{(1R)-1-[N''-cyano-N'-(quinolin-5-yl)carbamimidamido]-2,2-dimethylpropyl}-2-(3,4-dimethoxyphenyl)acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'antagonist A740003' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 N35 7S4 doub 1 n y C34 C33 7S4 sing 2 n y N35 C30 7S4 sing 3 n y C33 C32 7S4 doub 4 n y C30 C29 7S4 doub 5 n y C30 C31 7S4 sing 6 n y C29 C28 7S4 sing 7 n y C32 C31 7S4 sing 8 n y C31 C26 7S4 doub 9 n y C28 C27 7S4 doub 10 n y C26 C27 7S4 sing 11 n y C26 N25 7S4 sing 12 n n N22 C23 7S4 sing 13 n n N22 C21 7S4 doub 14 n n C23 N24 7S4 trip 15 n n N25 C21 7S4 sing 16 n n C21 N20 7S4 sing 17 n n N20 C05 7S4 sing 18 n n C03 C02 7S4 sing 19 n n C05 C02 7S4 sing 20 n n C05 N06 7S4 sing 21 n n C04 C02 7S4 sing 22 n n C02 C01 7S4 sing 23 n n N06 C07 7S4 sing 24 n n O08 C07 7S4 doub 25 n n C07 C09 7S4 sing 26 n n C09 C10 7S4 sing 27 n n C10 C11 7S4 doub 28 n y C10 C15 7S4 sing 29 n y C11 C12 7S4 sing 30 n y C15 C14 7S4 doub 31 n y C12 O18 7S4 sing 32 n n C12 C13 7S4 doub 33 n y O18 C19 7S4 sing 34 n n C14 C13 7S4 sing 35 n y C13 O16 7S4 sing 36 n n O16 C17 7S4 sing 37 n n C15 H1 7S4 sing 38 n n C17 H2 7S4 sing 39 n n C17 H3 7S4 sing 40 n n C17 H4 7S4 sing 41 n n C28 H5 7S4 sing 42 n n C01 H6 7S4 sing 43 n n C01 H7 7S4 sing 44 n n C01 H8 7S4 sing 45 n n C03 H9 7S4 sing 46 n n C03 H10 7S4 sing 47 n n C03 H11 7S4 sing 48 n n C04 H12 7S4 sing 49 n n C04 H13 7S4 sing 50 n n C04 H14 7S4 sing 51 n n C05 H15 7S4 sing 52 n n N06 H16 7S4 sing 53 n n C09 H17 7S4 sing 54 n n C09 H18 7S4 sing 55 n n C11 H19 7S4 sing 56 n n C14 H20 7S4 sing 57 n n C19 H21 7S4 sing 58 n n C19 H22 7S4 sing 59 n n C19 H23 7S4 sing 60 n n N20 H24 7S4 sing 61 n n N25 H25 7S4 sing 62 n n C27 H26 7S4 sing 63 n n C29 H27 7S4 sing 64 n n C32 H28 7S4 sing 65 n n C33 H29 7S4 sing 66 n n C34 H30 7S4 sing 67 n n # _atom_sites.entry_id 5U1U _atom_sites.fract_transf_matrix[1][1] 0.005897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005897 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 401 9187 NAG NAG . C 2 NAG A 1 402 9202 NAG NAG . D 2 NAG A 1 403 9213 NAG NAG . E 3 7S4 A 1 404 1 7S4 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 7S4 . . . E 3 -13.623 -6.481 -10.149 1 95.08 ? C10 7S4 404 A 1 HETATM 2 C C13 7S4 . . . E 3 -12.473 -6.268 -7.629 1 115.72 ? C13 7S4 404 A 1 HETATM 3 C C15 7S4 . . . E 3 -14.176 -5.627 -9.204 1 82.48 ? C15 7S4 404 A 1 HETATM 4 C C17 7S4 . . . E 3 -10.633 -5.537 -6.293 1 111.15 ? C17 7S4 404 A 1 HETATM 5 C C21 7S4 . . . E 3 -15.255 -3.34 -15.683 1 72.32 ? C21 7S4 404 A 1 HETATM 6 C C26 7S4 . . . E 3 -17.121 -2.638 -17.157 1 94.11 ? C26 7S4 404 A 1 HETATM 7 C C28 7S4 . . . E 3 -19.303 -3.223 -18.024 1 89.45 ? C28 7S4 404 A 1 HETATM 8 C C01 7S4 . . . E 3 -12.633 -2.505 -11.983 1 59.64 ? C01 7S4 404 A 1 HETATM 9 C C02 7S4 . . . E 3 -12.44 -2.71 -13.473 1 86.95 ? C02 7S4 404 A 1 HETATM 10 C C03 7S4 . . . E 3 -12.627 -1.383 -14.173 1 100.68 ? C03 7S4 404 A 1 HETATM 11 C C04 7S4 . . . E 3 -11.033 -3.213 -13.722 1 43.41 ? C04 7S4 404 A 1 HETATM 12 C C05 7S4 . . . E 3 -13.447 -3.731 -13.995 1 95.11 ? C05 7S4 404 A 1 HETATM 13 N N06 7S4 . . . E 3 -14.092 -4.557 -13.027 1 98.26 ? N06 7S4 404 A 1 HETATM 14 C C07 7S4 . . . E 3 -13.505 -5.771 -12.561 1 94.63 ? C07 7S4 404 A 1 HETATM 15 O O08 7S4 . . . E 3 -12.427 -6.136 -12.98 1 122.8 ? O08 7S4 404 A 1 HETATM 16 C C09 7S4 . . . E 3 -14.251 -6.596 -11.53 1 82.42 ? C09 7S4 404 A 1 HETATM 17 C C11 7S4 . . . E 3 -12.497 -7.226 -9.836 1 99.89 ? C11 7S4 404 A 1 HETATM 18 C C12 7S4 . . . E 3 -11.923 -7.122 -8.576 1 124.98 ? C12 7S4 404 A 1 HETATM 19 C C14 7S4 . . . E 3 -13.602 -5.523 -7.944 1 88.87 ? C14 7S4 404 A 1 HETATM 20 O O16 7S4 . . . E 3 -11.901 -6.158 -6.344 1 113.19 ? O16 7S4 404 A 1 HETATM 21 O O18 7S4 . . . E 3 -10.782 -7.885 -8.273 1 135.28 ? O18 7S4 404 A 1 HETATM 22 C C19 7S4 . . . E 3 -11.045 -9.255 -8.074 1 115.09 ? C19 7S4 404 A 1 HETATM 23 N N20 7S4 . . . E 3 -14.523 -3.027 -14.621 1 83.16 ? N20 7S4 404 A 1 HETATM 24 N N22 7S4 . . . E 3 -15.134 -4.494 -16.529 1 77.73 ? N22 7S4 404 A 1 HETATM 25 C C23 7S4 . . . E 3 -14.197 -5.556 -16.395 1 100.14 ? C23 7S4 404 A 1 HETATM 26 N N24 7S4 . . . E 3 -13.44 -6.399 -16.292 1 132.5 ? N24 7S4 404 A 1 HETATM 27 N N25 7S4 . . . E 3 -16.273 -2.402 -16.031 1 96.93 ? N25 7S4 404 A 1 HETATM 28 C C27 7S4 . . . E 3 -18.453 -2.984 -16.941 1 91.85 ? C27 7S4 404 A 1 HETATM 29 C C29 7S4 . . . E 3 -18.817 -3.116 -19.322 1 86.85 ? C29 7S4 404 A 1 HETATM 30 C C30 7S4 . . . E 3 -17.45 -2.763 -19.548 1 91.85 ? C30 7S4 404 A 1 HETATM 31 C C31 7S4 . . . E 3 -16.619 -2.529 -18.492 1 75.96 ? C31 7S4 404 A 1 HETATM 32 C C32 7S4 . . . E 3 -15.273 -2.181 -18.761 1 74.41 ? C32 7S4 404 A 1 HETATM 33 C C33 7S4 . . . E 3 -14.831 -2.088 -20.065 1 105.33 ? C33 7S4 404 A 1 HETATM 34 C C34 7S4 . . . E 3 -15.714 -2.337 -21.117 1 133.45 ? C34 7S4 404 A 1 HETATM 35 N N35 7S4 . . . E 3 -17.002 -2.667 -20.864 1 142.36 ? N35 7S4 404 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #