data_5U26 # _model_server_result.job_id Om-Y57gHhJHRL0uHqGY4-w _model_server_result.datetime_utc '2024-11-25 02:46:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u26 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5U26 # _exptl.entry_id 5U26 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U26 _cell.length_a 29.05 _cell.length_b 66.98 _cell.length_c 77.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U26 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 297 n n PA O2A NAP sing 298 n n PA O5B NAP sing 299 n n PA O3 NAP sing 300 n n O2A HOA2 NAP sing 301 n n O5B C5B NAP sing 302 n n C5B C4B NAP sing 303 n n C5B H51A NAP sing 304 n n C5B H52A NAP sing 305 n n C4B O4B NAP sing 306 n n C4B C3B NAP sing 307 n n C4B H4B NAP sing 308 n n O4B C1B NAP sing 309 n n C3B O3B NAP sing 310 n n C3B C2B NAP sing 311 n n C3B H3B NAP sing 312 n n O3B HO3A NAP sing 313 n n C2B O2B NAP sing 314 n n C2B C1B NAP sing 315 n n C2B H2B NAP sing 316 n n O2B P2B NAP sing 317 n n C1B N9A NAP sing 318 n n C1B H1B NAP sing 319 n n N9A C8A NAP sing 320 n y N9A C4A NAP sing 321 n y C8A N7A NAP doub 322 n y C8A H8A NAP sing 323 n n N7A C5A NAP sing 324 n y C5A C6A NAP sing 325 n y C5A C4A NAP doub 326 n y C6A N6A NAP sing 327 n n C6A N1A NAP doub 328 n y N6A H61A NAP sing 329 n n N6A H62A NAP sing 330 n n N1A C2A NAP sing 331 n y C2A N3A NAP doub 332 n y C2A H2A NAP sing 333 n n N3A C4A NAP sing 334 n y O3 PN NAP sing 335 n n PN O1N NAP doub 336 n n PN O2N NAP sing 337 n n PN O5D NAP sing 338 n n O5D C5D NAP sing 339 n n C5D C4D NAP sing 340 n n C5D H51N NAP sing 341 n n C5D H52N NAP sing 342 n n C4D O4D NAP sing 343 n n C4D C3D NAP sing 344 n n C4D H4D NAP sing 345 n n O4D C1D NAP sing 346 n n C3D O3D NAP sing 347 n n C3D C2D NAP sing 348 n n C3D H3D NAP sing 349 n n O3D HO3N NAP sing 350 n n C2D O2D NAP sing 351 n n C2D C1D NAP sing 352 n n C2D H2D NAP sing 353 n n O2D HO2N NAP sing 354 n n C1D N1N NAP sing 355 n n C1D H1D NAP sing 356 n n N1N C2N NAP sing 357 n y N1N C6N NAP doub 358 n y C2N C3N NAP doub 359 n y C2N H2N NAP sing 360 n n C3N C7N NAP sing 361 n n C3N C4N NAP sing 362 n y C7N O7N NAP doub 363 n n C7N N7N NAP sing 364 n n N7N H71N NAP sing 365 n n N7N H72N NAP sing 366 n n C4N C5N NAP doub 367 n y C4N H4N NAP sing 368 n n C5N C6N NAP sing 369 n y C5N H5N NAP sing 370 n n C6N H6N NAP sing 371 n n P2B O1X NAP doub 372 n n P2B O2X NAP sing 373 n n P2B O3X NAP sing 374 n n O2X HOP2 NAP sing 375 n n O3X HOP3 NAP sing 376 n n # _atom_sites.entry_id 5U26 _atom_sites.fract_transf_matrix[1][1] 0.034423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012943 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MMV A 1 201 1 MMV 218 . C 3 NAP A 1 202 1 NAP NAP . D 4 EDO A 1 203 2 EDO EDO . E 5 SO4 A 1 204 1 SO4 SO4 . F 5 SO4 A 1 205 2 SO4 SO4 . G 6 HOH A 1 301 97 HOH HOH . G 6 HOH A 2 302 114 HOH HOH . G 6 HOH A 3 303 76 HOH HOH . G 6 HOH A 4 304 103 HOH HOH . G 6 HOH A 5 305 34 HOH HOH . G 6 HOH A 6 306 122 HOH HOH . G 6 HOH A 7 307 75 HOH HOH . G 6 HOH A 8 308 7 HOH HOH . G 6 HOH A 9 309 46 HOH HOH . G 6 HOH A 10 310 80 HOH HOH . G 6 HOH A 11 311 2 HOH HOH . G 6 HOH A 12 312 16 HOH HOH . G 6 HOH A 13 313 88 HOH HOH . G 6 HOH A 14 314 21 HOH HOH . G 6 HOH A 15 315 15 HOH HOH . G 6 HOH A 16 316 20 HOH HOH . G 6 HOH A 17 317 84 HOH HOH . G 6 HOH A 18 318 6 HOH HOH . G 6 HOH A 19 319 109 HOH HOH . G 6 HOH A 20 320 86 HOH HOH . G 6 HOH A 21 321 56 HOH HOH . G 6 HOH A 22 322 49 HOH HOH . G 6 HOH A 23 323 69 HOH HOH . G 6 HOH A 24 324 113 HOH HOH . G 6 HOH A 25 325 107 HOH HOH . G 6 HOH A 26 326 12 HOH HOH . G 6 HOH A 27 327 94 HOH HOH . G 6 HOH A 28 328 65 HOH HOH . G 6 HOH A 29 329 5 HOH HOH . G 6 HOH A 30 330 66 HOH HOH . G 6 HOH A 31 331 51 HOH HOH . G 6 HOH A 32 332 120 HOH HOH . G 6 HOH A 33 333 11 HOH HOH . G 6 HOH A 34 334 4 HOH HOH . G 6 HOH A 35 335 48 HOH HOH . G 6 HOH A 36 336 70 HOH HOH . G 6 HOH A 37 337 92 HOH HOH . G 6 HOH A 38 338 67 HOH HOH . G 6 HOH A 39 339 14 HOH HOH . G 6 HOH A 40 340 19 HOH HOH . G 6 HOH A 41 341 95 HOH HOH . G 6 HOH A 42 342 10 HOH HOH . G 6 HOH A 43 343 110 HOH HOH . G 6 HOH A 44 344 98 HOH HOH . G 6 HOH A 45 345 81 HOH HOH . G 6 HOH A 46 346 52 HOH HOH . G 6 HOH A 47 347 3 HOH HOH . G 6 HOH A 48 348 108 HOH HOH . G 6 HOH A 49 349 36 HOH HOH . G 6 HOH A 50 350 82 HOH HOH . G 6 HOH A 51 351 42 HOH HOH . G 6 HOH A 52 352 60 HOH HOH . G 6 HOH A 53 353 123 HOH HOH . G 6 HOH A 54 354 41 HOH HOH . G 6 HOH A 55 355 55 HOH HOH . G 6 HOH A 56 356 38 HOH HOH . G 6 HOH A 57 357 119 HOH HOH . G 6 HOH A 58 358 24 HOH HOH . G 6 HOH A 59 359 62 HOH HOH . G 6 HOH A 60 360 72 HOH HOH . G 6 HOH A 61 361 77 HOH HOH . G 6 HOH A 62 362 37 HOH HOH . G 6 HOH A 63 363 44 HOH HOH . G 6 HOH A 64 364 33 HOH HOH . G 6 HOH A 65 365 27 HOH HOH . G 6 HOH A 66 366 104 HOH HOH . G 6 HOH A 67 367 31 HOH HOH . G 6 HOH A 68 368 1 HOH HOH . G 6 HOH A 69 369 8 HOH HOH . G 6 HOH A 70 370 47 HOH HOH . G 6 HOH A 71 371 40 HOH HOH . G 6 HOH A 72 372 96 HOH HOH . G 6 HOH A 73 373 68 HOH HOH . G 6 HOH A 74 374 13 HOH HOH . G 6 HOH A 75 375 71 HOH HOH . G 6 HOH A 76 376 32 HOH HOH . G 6 HOH A 77 377 63 HOH HOH . G 6 HOH A 78 378 87 HOH HOH . G 6 HOH A 79 379 112 HOH HOH . G 6 HOH A 80 380 74 HOH HOH . G 6 HOH A 81 381 28 HOH HOH . G 6 HOH A 82 382 91 HOH HOH . G 6 HOH A 83 383 117 HOH HOH . G 6 HOH A 84 384 50 HOH HOH . G 6 HOH A 85 385 23 HOH HOH . G 6 HOH A 86 386 18 HOH HOH . G 6 HOH A 87 387 54 HOH HOH . G 6 HOH A 88 388 90 HOH HOH . G 6 HOH A 89 389 64 HOH HOH . G 6 HOH A 90 390 101 HOH HOH . G 6 HOH A 91 391 22 HOH HOH . G 6 HOH A 92 392 43 HOH HOH . G 6 HOH A 93 393 45 HOH HOH . G 6 HOH A 94 394 26 HOH HOH . G 6 HOH A 95 395 85 HOH HOH . G 6 HOH A 96 396 100 HOH HOH . G 6 HOH A 97 397 83 HOH HOH . G 6 HOH A 98 398 78 HOH HOH . G 6 HOH A 99 399 58 HOH HOH . G 6 HOH A 100 400 17 HOH HOH . G 6 HOH A 101 401 53 HOH HOH . G 6 HOH A 102 402 39 HOH HOH . G 6 HOH A 103 403 25 HOH HOH . G 6 HOH A 104 404 29 HOH HOH . G 6 HOH A 105 405 35 HOH HOH . G 6 HOH A 106 406 116 HOH HOH . G 6 HOH A 107 407 124 HOH HOH . G 6 HOH A 108 408 106 HOH HOH . G 6 HOH A 109 409 9 HOH HOH . G 6 HOH A 110 410 73 HOH HOH . G 6 HOH A 111 411 105 HOH HOH . G 6 HOH A 112 412 59 HOH HOH . G 6 HOH A 113 413 121 HOH HOH . G 6 HOH A 114 414 61 HOH HOH . G 6 HOH A 115 415 57 HOH HOH . G 6 HOH A 116 416 79 HOH HOH . G 6 HOH A 117 417 111 HOH HOH . G 6 HOH A 118 418 93 HOH HOH . G 6 HOH A 119 419 30 HOH HOH . G 6 HOH A 120 420 115 HOH HOH . G 6 HOH A 121 421 89 HOH HOH . G 6 HOH A 122 422 102 HOH HOH . G 6 HOH A 123 423 99 HOH HOH . G 6 HOH A 124 424 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 -14.329 4.934 9.322 1 7.59 ? PA NAP 202 A 1 HETATM 2 O O1A NAP . . . C 3 -15.109 3.835 9.351 1 7.62 ? O1A NAP 202 A 1 HETATM 3 O O2A NAP . . . C 3 -12.957 4.852 9.306 1 6.91 ? O2A NAP 202 A 1 HETATM 4 O O5B NAP . . . C 3 -14.675 5.845 8.072 1 10.4 ? O5B NAP 202 A 1 HETATM 5 C C5B NAP . . . C 3 -15.915 6.417 7.851 1 8.68 ? C5B NAP 202 A 1 HETATM 6 C C4B NAP . . . C 3 -16.075 6.951 6.43 1 9.37 ? C4B NAP 202 A 1 HETATM 7 O O4B NAP . . . C 3 -15.922 5.992 5.418 1 10.95 ? O4B NAP 202 A 1 HETATM 8 C C3B NAP . . . C 3 -17.357 7.7 6.159 1 11.58 ? C3B NAP 202 A 1 HETATM 9 O O3B NAP . . . C 3 -17.356 8.985 6.69 1 14.08 ? O3B NAP 202 A 1 HETATM 10 C C2B NAP . . . C 3 -17.32 7.71 4.632 1 12.31 ? C2B NAP 202 A 1 HETATM 11 O O2B NAP . . . C 3 -16.392 8.617 4.212 1 11.37 ? O2B NAP 202 A 1 HETATM 12 C C1B NAP . . . C 3 -16.766 6.322 4.354 1 12.04 ? C1B NAP 202 A 1 HETATM 13 N N9A NAP . . . C 3 -17.769 5.302 4.183 1 14.2 ? N9A NAP 202 A 1 HETATM 14 C C8A NAP . . . C 3 -18.344 4.559 5.11 1 15.65 ? C8A NAP 202 A 1 HETATM 15 N N7A NAP . . . C 3 -19.17 3.647 4.595 1 16.32 ? N7A NAP 202 A 1 HETATM 16 C C5A NAP . . . C 3 -19.127 3.808 3.276 1 17.57 ? C5A NAP 202 A 1 HETATM 17 C C6A NAP . . . C 3 -19.753 3.212 2.062 1 23.8 ? C6A NAP 202 A 1 HETATM 18 N N6A NAP . . . C 3 -20.642 2.212 2.18 1 27.91 ? N6A NAP 202 A 1 HETATM 19 N N1A NAP . . . C 3 -19.424 3.689 0.873 1 18.87 ? N1A NAP 202 A 1 HETATM 20 C C2A NAP . . . C 3 -18.567 4.68 0.751 1 15.73 ? C2A NAP 202 A 1 HETATM 21 N N3A NAP . . . C 3 -17.976 5.265 1.76 1 11 ? N3A NAP 202 A 1 HETATM 22 C C4A NAP . . . C 3 -18.196 4.901 3.014 1 12.5 ? C4A NAP 202 A 1 HETATM 23 O O3 NAP . . . C 3 -14.767 5.93 10.51 1 8.69 ? O3 NAP 202 A 1 HETATM 24 P PN NAP . . . C 3 -14.988 5.651 12.057 1 10.43 ? PN NAP 202 A 1 HETATM 25 O O1N NAP . . . C 3 -16.003 4.726 12.258 1 9.27 ? O1N NAP 202 A 1 HETATM 26 O O2N NAP . . . C 3 -15.181 6.928 12.629 1 8.15 ? O2N NAP 202 A 1 HETATM 27 O O5D NAP . . . C 3 -13.648 5.07 12.541 1 10.31 ? O5D NAP 202 A 1 HETATM 28 C C5D NAP . . . C 3 -12.521 5.868 12.693 1 8.77 ? C5D NAP 202 A 1 HETATM 29 C C4D NAP . . . C 3 -11.843 5.671 14.057 1 8.62 ? C4D NAP 202 A 1 HETATM 30 O O4D NAP . . . C 3 -11.464 4.338 14.307 1 9.94 ? O4D NAP 202 A 1 HETATM 31 C C3D NAP . . . C 3 -10.601 6.514 14.308 1 11.86 ? C3D NAP 202 A 1 HETATM 32 O O3D NAP . . . C 3 -10.549 6.943 15.665 1 12.71 ? O3D NAP 202 A 1 HETATM 33 C C2D NAP . . . C 3 -9.451 5.523 14.134 1 10.56 ? C2D NAP 202 A 1 HETATM 34 O O2D NAP . . . C 3 -8.304 5.877 14.843 1 9.76 ? O2D NAP 202 A 1 HETATM 35 C C1D NAP . . . C 3 -10.116 4.265 14.67 1 8.89 ? C1D NAP 202 A 1 HETATM 36 N N1N NAP . . . C 3 -9.537 3.007 14.217 1 12.25 ? N1N NAP 202 A 1 HETATM 37 C C2N NAP . . . C 3 -9.221 2.058 15.107 1 8.72 ? C2N NAP 202 A 1 HETATM 38 C C3N NAP . . . C 3 -8.709 0.837 14.726 1 7.3 ? C3N NAP 202 A 1 HETATM 39 C C7N NAP . . . C 3 -8.362 -0.197 15.788 1 9.63 ? C7N NAP 202 A 1 HETATM 40 O O7N NAP . . . C 3 -8.173 -1.279 15.445 1 10.95 ? O7N NAP 202 A 1 HETATM 41 N N7N NAP . . . C 3 -8.321 0.18 17.049 1 4.91 ? N7N NAP 202 A 1 HETATM 42 C C4N NAP . . . C 3 -8.5 0.613 13.376 1 7.47 ? C4N NAP 202 A 1 HETATM 43 C C5N NAP . . . C 3 -8.837 1.577 12.484 1 7.23 ? C5N NAP 202 A 1 HETATM 44 C C6N NAP . . . C 3 -9.377 2.752 12.948 1 11.5 ? C6N NAP 202 A 1 HETATM 45 P P2B NAP . . . C 3 -16.745 10.053 3.573 1 12.47 ? P2B NAP 202 A 1 HETATM 46 O O1X NAP . . . C 3 -17.206 10.737 4.763 1 12.3 ? O1X NAP 202 A 1 HETATM 47 O O2X NAP . . . C 3 -15.482 10.512 3.093 1 9.28 ? O2X NAP 202 A 1 HETATM 48 O O3X NAP . . . C 3 -17.721 9.816 2.579 1 8.45 ? O3X NAP 202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 48 #