data_5U27 # _model_server_result.job_id MBLgBVA5LYoQlgw3XLsiUQ _model_server_result.datetime_utc '2024-11-28 19:33:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5U27 # _exptl.entry_id 5U27 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U27 _cell.length_a 29.73 _cell.length_b 66.55 _cell.length_c 77.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 246 n n PA O2A NAP sing 247 n n PA O5B NAP sing 248 n n PA O3 NAP sing 249 n n O2A HOA2 NAP sing 250 n n O5B C5B NAP sing 251 n n C5B C4B NAP sing 252 n n C5B H51A NAP sing 253 n n C5B H52A NAP sing 254 n n C4B O4B NAP sing 255 n n C4B C3B NAP sing 256 n n C4B H4B NAP sing 257 n n O4B C1B NAP sing 258 n n C3B O3B NAP sing 259 n n C3B C2B NAP sing 260 n n C3B H3B NAP sing 261 n n O3B HO3A NAP sing 262 n n C2B O2B NAP sing 263 n n C2B C1B NAP sing 264 n n C2B H2B NAP sing 265 n n O2B P2B NAP sing 266 n n C1B N9A NAP sing 267 n n C1B H1B NAP sing 268 n n N9A C8A NAP sing 269 n y N9A C4A NAP sing 270 n y C8A N7A NAP doub 271 n y C8A H8A NAP sing 272 n n N7A C5A NAP sing 273 n y C5A C6A NAP sing 274 n y C5A C4A NAP doub 275 n y C6A N6A NAP sing 276 n n C6A N1A NAP doub 277 n y N6A H61A NAP sing 278 n n N6A H62A NAP sing 279 n n N1A C2A NAP sing 280 n y C2A N3A NAP doub 281 n y C2A H2A NAP sing 282 n n N3A C4A NAP sing 283 n y O3 PN NAP sing 284 n n PN O1N NAP doub 285 n n PN O2N NAP sing 286 n n PN O5D NAP sing 287 n n O5D C5D NAP sing 288 n n C5D C4D NAP sing 289 n n C5D H51N NAP sing 290 n n C5D H52N NAP sing 291 n n C4D O4D NAP sing 292 n n C4D C3D NAP sing 293 n n C4D H4D NAP sing 294 n n O4D C1D NAP sing 295 n n C3D O3D NAP sing 296 n n C3D C2D NAP sing 297 n n C3D H3D NAP sing 298 n n O3D HO3N NAP sing 299 n n C2D O2D NAP sing 300 n n C2D C1D NAP sing 301 n n C2D H2D NAP sing 302 n n O2D HO2N NAP sing 303 n n C1D N1N NAP sing 304 n n C1D H1D NAP sing 305 n n N1N C2N NAP sing 306 n y N1N C6N NAP doub 307 n y C2N C3N NAP doub 308 n y C2N H2N NAP sing 309 n n C3N C7N NAP sing 310 n n C3N C4N NAP sing 311 n y C7N O7N NAP doub 312 n n C7N N7N NAP sing 313 n n N7N H71N NAP sing 314 n n N7N H72N NAP sing 315 n n C4N C5N NAP doub 316 n y C4N H4N NAP sing 317 n n C5N C6N NAP sing 318 n y C5N H5N NAP sing 319 n n C6N H6N NAP sing 320 n n P2B O1X NAP doub 321 n n P2B O2X NAP sing 322 n n P2B O3X NAP sing 323 n n O2X HOP2 NAP sing 324 n n O3X HOP3 NAP sing 325 n n # _atom_sites.entry_id 5U27 _atom_sites.fract_transf_matrix[1][1] 0.033636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 1 NAP NAP . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 3 EDO A 1 204 3 EDO EDO . F 4 P65 A 1 205 1 P65 P65 . G 5 HOH A 1 301 101 HOH HOH . G 5 HOH A 2 302 58 HOH HOH . G 5 HOH A 3 303 72 HOH HOH . G 5 HOH A 4 304 102 HOH HOH . G 5 HOH A 5 305 10 HOH HOH . G 5 HOH A 6 306 85 HOH HOH . G 5 HOH A 7 307 105 HOH HOH . G 5 HOH A 8 308 55 HOH HOH . G 5 HOH A 9 309 82 HOH HOH . G 5 HOH A 10 310 81 HOH HOH . G 5 HOH A 11 311 84 HOH HOH . G 5 HOH A 12 312 89 HOH HOH . G 5 HOH A 13 313 23 HOH HOH . G 5 HOH A 14 314 60 HOH HOH . G 5 HOH A 15 315 39 HOH HOH . G 5 HOH A 16 316 73 HOH HOH . G 5 HOH A 17 317 113 HOH HOH . G 5 HOH A 18 318 75 HOH HOH . G 5 HOH A 19 319 52 HOH HOH . G 5 HOH A 20 320 40 HOH HOH . G 5 HOH A 21 321 17 HOH HOH . G 5 HOH A 22 322 97 HOH HOH . G 5 HOH A 23 323 33 HOH HOH . G 5 HOH A 24 324 104 HOH HOH . G 5 HOH A 25 325 12 HOH HOH . G 5 HOH A 26 326 15 HOH HOH . G 5 HOH A 27 327 76 HOH HOH . G 5 HOH A 28 328 92 HOH HOH . G 5 HOH A 29 329 11 HOH HOH . G 5 HOH A 30 330 95 HOH HOH . G 5 HOH A 31 331 44 HOH HOH . G 5 HOH A 32 332 66 HOH HOH . G 5 HOH A 33 333 20 HOH HOH . G 5 HOH A 34 334 110 HOH HOH . G 5 HOH A 35 335 19 HOH HOH . G 5 HOH A 36 336 48 HOH HOH . G 5 HOH A 37 337 62 HOH HOH . G 5 HOH A 38 338 80 HOH HOH . G 5 HOH A 39 339 14 HOH HOH . G 5 HOH A 40 340 63 HOH HOH . G 5 HOH A 41 341 64 HOH HOH . G 5 HOH A 42 342 30 HOH HOH . G 5 HOH A 43 343 109 HOH HOH . G 5 HOH A 44 344 13 HOH HOH . G 5 HOH A 45 345 119 HOH HOH . G 5 HOH A 46 346 47 HOH HOH . G 5 HOH A 47 347 2 HOH HOH . G 5 HOH A 48 348 79 HOH HOH . G 5 HOH A 49 349 5 HOH HOH . G 5 HOH A 50 350 86 HOH HOH . G 5 HOH A 51 351 8 HOH HOH . G 5 HOH A 52 352 68 HOH HOH . G 5 HOH A 53 353 114 HOH HOH . G 5 HOH A 54 354 61 HOH HOH . G 5 HOH A 55 355 46 HOH HOH . G 5 HOH A 56 356 25 HOH HOH . G 5 HOH A 57 357 94 HOH HOH . G 5 HOH A 58 358 70 HOH HOH . G 5 HOH A 59 359 4 HOH HOH . G 5 HOH A 60 360 98 HOH HOH . G 5 HOH A 61 361 49 HOH HOH . G 5 HOH A 62 362 27 HOH HOH . G 5 HOH A 63 363 18 HOH HOH . G 5 HOH A 64 364 42 HOH HOH . G 5 HOH A 65 365 22 HOH HOH . G 5 HOH A 66 366 43 HOH HOH . G 5 HOH A 67 367 115 HOH HOH . G 5 HOH A 68 368 35 HOH HOH . G 5 HOH A 69 369 45 HOH HOH . G 5 HOH A 70 370 96 HOH HOH . G 5 HOH A 71 371 21 HOH HOH . G 5 HOH A 72 372 57 HOH HOH . G 5 HOH A 73 373 90 HOH HOH . G 5 HOH A 74 374 9 HOH HOH . G 5 HOH A 75 375 50 HOH HOH . G 5 HOH A 76 376 78 HOH HOH . G 5 HOH A 77 377 51 HOH HOH . G 5 HOH A 78 378 88 HOH HOH . G 5 HOH A 79 379 67 HOH HOH . G 5 HOH A 80 380 26 HOH HOH . G 5 HOH A 81 381 108 HOH HOH . G 5 HOH A 82 382 53 HOH HOH . G 5 HOH A 83 383 65 HOH HOH . G 5 HOH A 84 384 7 HOH HOH . G 5 HOH A 85 385 120 HOH HOH . G 5 HOH A 86 386 69 HOH HOH . G 5 HOH A 87 387 41 HOH HOH . G 5 HOH A 88 388 112 HOH HOH . G 5 HOH A 89 389 31 HOH HOH . G 5 HOH A 90 390 77 HOH HOH . G 5 HOH A 91 391 117 HOH HOH . G 5 HOH A 92 392 36 HOH HOH . G 5 HOH A 93 393 118 HOH HOH . G 5 HOH A 94 394 29 HOH HOH . G 5 HOH A 95 395 3 HOH HOH . G 5 HOH A 96 396 6 HOH HOH . G 5 HOH A 97 397 87 HOH HOH . G 5 HOH A 98 398 34 HOH HOH . G 5 HOH A 99 399 1 HOH HOH . G 5 HOH A 100 400 16 HOH HOH . G 5 HOH A 101 401 107 HOH HOH . G 5 HOH A 102 402 116 HOH HOH . G 5 HOH A 103 403 32 HOH HOH . G 5 HOH A 104 404 74 HOH HOH . G 5 HOH A 105 405 103 HOH HOH . G 5 HOH A 106 406 38 HOH HOH . G 5 HOH A 107 407 24 HOH HOH . G 5 HOH A 108 408 54 HOH HOH . G 5 HOH A 109 409 99 HOH HOH . G 5 HOH A 110 410 56 HOH HOH . G 5 HOH A 111 411 37 HOH HOH . G 5 HOH A 112 412 71 HOH HOH . G 5 HOH A 113 413 28 HOH HOH . G 5 HOH A 114 414 91 HOH HOH . G 5 HOH A 115 415 106 HOH HOH . G 5 HOH A 116 416 100 HOH HOH . G 5 HOH A 117 417 93 HOH HOH . G 5 HOH A 118 418 83 HOH HOH . G 5 HOH A 119 419 111 HOH HOH . G 5 HOH A 120 420 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 -14.359 5.005 9.358 1 12.39 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . B 2 -15.223 3.778 9.304 1 10.91 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . B 2 -12.863 4.858 9.449 1 13.52 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . B 2 -14.64 5.964 8.104 1 12.68 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . B 2 -15.961 6.402 7.796 1 12.45 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . B 2 -15.897 7.103 6.456 1 12.95 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . B 2 -15.8 6.118 5.43 1 14.05 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . B 2 -17.155 7.889 6.115 1 13.04 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . B 2 -17.108 9.208 6.663 1 11.66 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . B 2 -17.131 7.891 4.599 1 13.53 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . B 2 -16.119 8.774 4.123 1 14.26 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . B 2 -16.576 6.517 4.291 1 13.68 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . B 2 -17.679 5.548 4.125 1 15.04 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . B 2 -18.328 4.908 5.124 1 15.2 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . B 2 -19.281 4.085 4.629 1 15.29 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . B 2 -19.248 4.197 3.288 1 16.39 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . B 2 -19.983 3.604 2.153 1 18.34 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . B 2 -20.974 2.706 2.366 1 19.34 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . B 2 -19.636 3.992 0.903 1 19.31 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . B 2 -18.654 4.884 0.673 1 18.22 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . B 2 -17.946 5.459 1.659 1 17.4 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . B 2 -18.192 5.162 2.96 1 16.16 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . B 2 -14.874 6.023 10.498 1 12.06 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . B 2 -15.26 5.714 12.031 1 14.73 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . B 2 -16.362 4.684 12.074 1 15.12 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . B 2 -15.45 7.052 12.697 1 15.49 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . B 2 -13.899 5.086 12.614 1 15.79 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . B 2 -12.791 5.949 12.853 1 15.86 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . B 2 -12.237 5.682 14.246 1 16.32 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . B 2 -11.882 4.303 14.358 1 15.26 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . B 2 -10.977 6.489 14.516 1 15.9 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . B 2 -11.01 6.944 15.872 1 16.72 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . B 2 -9.862 5.479 14.405 1 14.63 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . B 2 -8.742 5.863 15.213 1 14.41 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . B 2 -10.557 4.219 14.889 1 14.3 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . B 2 -9.93 2.981 14.427 1 12.85 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . B 2 -9.604 2.065 15.345 1 11.5 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . B 2 -9.008 0.872 14.972 1 11.18 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . B 2 -8.655 -0.147 16.014 1 12.37 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . B 2 -8.343 -1.27 15.645 1 13.71 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . B 2 -8.724 0.176 17.311 1 11.04 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . B 2 -8.771 0.624 13.625 1 11.69 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . B 2 -9.132 1.591 12.688 1 11.34 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . B 2 -9.719 2.771 13.122 1 11.32 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . B 2 -16.376 10.287 3.626 1 13.5 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . B 2 -16.84 10.971 4.894 1 13.99 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . B 2 -15.012 10.74 3.173 1 12.47 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . B 2 -17.39 10.163 2.519 1 12.54 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #