data_5U27 # _model_server_result.job_id nkFQUySBvdm9g9CQAhkeZA _model_server_result.datetime_utc '2024-11-05 13:42:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5U27 # _exptl.entry_id 5U27 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,4-diamino-6-methyl-5-[3-(2,4,5-trichlorophenoxy)propyloxy]pyrimidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U27 _cell.length_a 29.73 _cell.length_b 66.55 _cell.length_c 77.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H15 Cl3 N4 O2' _chem_comp.formula_weight 377.654 _chem_comp.id P65 _chem_comp.mon_nstd_flag . _chem_comp.name 2,4-diamino-6-methyl-5-[3-(2,4,5-trichlorophenoxy)propyloxy]pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NH1 C3 P65 sing 326 n n C3 N2 P65 doub 327 n y C3 N4 P65 sing 328 n y N2 C1 P65 sing 329 n y N4 C5 P65 doub 330 n y C1 CM1 P65 sing 331 n n C1 C6 P65 doub 332 n y C5 C6 P65 sing 333 n y C5 NH2 P65 sing 334 n n C6 O7 P65 sing 335 n n O7 C8 P65 sing 336 n n C8 C9 P65 sing 337 n n CL1 C13 P65 sing 338 n n C13 C14 P65 doub 339 n y C13 C12 P65 sing 340 n y C14 C15 P65 sing 341 n y C9 C10 P65 sing 342 n n O11 C12 P65 sing 343 n n O11 C10 P65 sing 344 n n C12 C17 P65 doub 345 n y C15 CL2 P65 sing 346 n n C15 C16 P65 doub 347 n y C17 C16 P65 sing 348 n y C16 CL3 P65 sing 349 n n NH2 H1 P65 sing 350 n n NH2 H2 P65 sing 351 n n NH1 H3 P65 sing 352 n n NH1 H4 P65 sing 353 n n CM1 H5 P65 sing 354 n n CM1 H6 P65 sing 355 n n CM1 H7 P65 sing 356 n n C8 H8 P65 sing 357 n n C8 H9 P65 sing 358 n n C9 H10 P65 sing 359 n n C9 H11 P65 sing 360 n n C10 H12 P65 sing 361 n n C10 H13 P65 sing 362 n n C17 H14 P65 sing 363 n n C14 H15 P65 sing 364 n n # _atom_sites.entry_id 5U27 _atom_sites.fract_transf_matrix[1][1] 0.033636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 1 NAP NAP . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 3 EDO A 1 204 3 EDO EDO . F 4 P65 A 1 205 1 P65 P65 . G 5 HOH A 1 301 101 HOH HOH . G 5 HOH A 2 302 58 HOH HOH . G 5 HOH A 3 303 72 HOH HOH . G 5 HOH A 4 304 102 HOH HOH . G 5 HOH A 5 305 10 HOH HOH . G 5 HOH A 6 306 85 HOH HOH . G 5 HOH A 7 307 105 HOH HOH . G 5 HOH A 8 308 55 HOH HOH . G 5 HOH A 9 309 82 HOH HOH . G 5 HOH A 10 310 81 HOH HOH . G 5 HOH A 11 311 84 HOH HOH . G 5 HOH A 12 312 89 HOH HOH . G 5 HOH A 13 313 23 HOH HOH . G 5 HOH A 14 314 60 HOH HOH . G 5 HOH A 15 315 39 HOH HOH . G 5 HOH A 16 316 73 HOH HOH . G 5 HOH A 17 317 113 HOH HOH . G 5 HOH A 18 318 75 HOH HOH . G 5 HOH A 19 319 52 HOH HOH . G 5 HOH A 20 320 40 HOH HOH . G 5 HOH A 21 321 17 HOH HOH . G 5 HOH A 22 322 97 HOH HOH . G 5 HOH A 23 323 33 HOH HOH . G 5 HOH A 24 324 104 HOH HOH . G 5 HOH A 25 325 12 HOH HOH . G 5 HOH A 26 326 15 HOH HOH . G 5 HOH A 27 327 76 HOH HOH . G 5 HOH A 28 328 92 HOH HOH . G 5 HOH A 29 329 11 HOH HOH . G 5 HOH A 30 330 95 HOH HOH . G 5 HOH A 31 331 44 HOH HOH . G 5 HOH A 32 332 66 HOH HOH . G 5 HOH A 33 333 20 HOH HOH . G 5 HOH A 34 334 110 HOH HOH . G 5 HOH A 35 335 19 HOH HOH . G 5 HOH A 36 336 48 HOH HOH . G 5 HOH A 37 337 62 HOH HOH . G 5 HOH A 38 338 80 HOH HOH . G 5 HOH A 39 339 14 HOH HOH . G 5 HOH A 40 340 63 HOH HOH . G 5 HOH A 41 341 64 HOH HOH . G 5 HOH A 42 342 30 HOH HOH . G 5 HOH A 43 343 109 HOH HOH . G 5 HOH A 44 344 13 HOH HOH . G 5 HOH A 45 345 119 HOH HOH . G 5 HOH A 46 346 47 HOH HOH . G 5 HOH A 47 347 2 HOH HOH . G 5 HOH A 48 348 79 HOH HOH . G 5 HOH A 49 349 5 HOH HOH . G 5 HOH A 50 350 86 HOH HOH . G 5 HOH A 51 351 8 HOH HOH . G 5 HOH A 52 352 68 HOH HOH . G 5 HOH A 53 353 114 HOH HOH . G 5 HOH A 54 354 61 HOH HOH . G 5 HOH A 55 355 46 HOH HOH . G 5 HOH A 56 356 25 HOH HOH . G 5 HOH A 57 357 94 HOH HOH . G 5 HOH A 58 358 70 HOH HOH . G 5 HOH A 59 359 4 HOH HOH . G 5 HOH A 60 360 98 HOH HOH . G 5 HOH A 61 361 49 HOH HOH . G 5 HOH A 62 362 27 HOH HOH . G 5 HOH A 63 363 18 HOH HOH . G 5 HOH A 64 364 42 HOH HOH . G 5 HOH A 65 365 22 HOH HOH . G 5 HOH A 66 366 43 HOH HOH . G 5 HOH A 67 367 115 HOH HOH . G 5 HOH A 68 368 35 HOH HOH . G 5 HOH A 69 369 45 HOH HOH . G 5 HOH A 70 370 96 HOH HOH . G 5 HOH A 71 371 21 HOH HOH . G 5 HOH A 72 372 57 HOH HOH . G 5 HOH A 73 373 90 HOH HOH . G 5 HOH A 74 374 9 HOH HOH . G 5 HOH A 75 375 50 HOH HOH . G 5 HOH A 76 376 78 HOH HOH . G 5 HOH A 77 377 51 HOH HOH . G 5 HOH A 78 378 88 HOH HOH . G 5 HOH A 79 379 67 HOH HOH . G 5 HOH A 80 380 26 HOH HOH . G 5 HOH A 81 381 108 HOH HOH . G 5 HOH A 82 382 53 HOH HOH . G 5 HOH A 83 383 65 HOH HOH . G 5 HOH A 84 384 7 HOH HOH . G 5 HOH A 85 385 120 HOH HOH . G 5 HOH A 86 386 69 HOH HOH . G 5 HOH A 87 387 41 HOH HOH . G 5 HOH A 88 388 112 HOH HOH . G 5 HOH A 89 389 31 HOH HOH . G 5 HOH A 90 390 77 HOH HOH . G 5 HOH A 91 391 117 HOH HOH . G 5 HOH A 92 392 36 HOH HOH . G 5 HOH A 93 393 118 HOH HOH . G 5 HOH A 94 394 29 HOH HOH . G 5 HOH A 95 395 3 HOH HOH . G 5 HOH A 96 396 6 HOH HOH . G 5 HOH A 97 397 87 HOH HOH . G 5 HOH A 98 398 34 HOH HOH . G 5 HOH A 99 399 1 HOH HOH . G 5 HOH A 100 400 16 HOH HOH . G 5 HOH A 101 401 107 HOH HOH . G 5 HOH A 102 402 116 HOH HOH . G 5 HOH A 103 403 32 HOH HOH . G 5 HOH A 104 404 74 HOH HOH . G 5 HOH A 105 405 103 HOH HOH . G 5 HOH A 106 406 38 HOH HOH . G 5 HOH A 107 407 24 HOH HOH . G 5 HOH A 108 408 54 HOH HOH . G 5 HOH A 109 409 99 HOH HOH . G 5 HOH A 110 410 56 HOH HOH . G 5 HOH A 111 411 37 HOH HOH . G 5 HOH A 112 412 71 HOH HOH . G 5 HOH A 113 413 28 HOH HOH . G 5 HOH A 114 414 91 HOH HOH . G 5 HOH A 115 415 106 HOH HOH . G 5 HOH A 116 416 100 HOH HOH . G 5 HOH A 117 417 93 HOH HOH . G 5 HOH A 118 418 83 HOH HOH . G 5 HOH A 119 419 111 HOH HOH . G 5 HOH A 120 420 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NH2 P65 . . . F 4 -7.288 -2.53 12.22 1 12.13 ? NH2 P65 205 A 1 HETATM 2 C C5 P65 . . . F 4 -6.315 -2.616 13.3 1 12.82 ? C5 P65 205 A 1 HETATM 3 N N4 P65 . . . F 4 -6.154 -3.754 13.947 1 13.57 ? N4 P65 205 A 1 HETATM 4 C C3 P65 . . . F 4 -5.279 -3.861 14.931 1 13.92 ? C3 P65 205 A 1 HETATM 5 N NH1 P65 . . . F 4 -5.141 -5.131 15.612 1 13.19 ? NH1 P65 205 A 1 HETATM 6 N N2 P65 . . . F 4 -4.534 -2.828 15.299 1 14.6 ? N2 P65 205 A 1 HETATM 7 C C6 P65 . . . F 4 -5.548 -1.52 13.662 1 13.1 ? C6 P65 205 A 1 HETATM 8 C C1 P65 . . . F 4 -4.643 -1.657 14.7 1 14.45 ? C1 P65 205 A 1 HETATM 9 C CM1 P65 . . . F 4 -3.778 -0.476 15.14 1 14.84 ? CM1 P65 205 A 1 HETATM 10 O O7 P65 . . . F 4 -5.693 -0.298 13.01 1 12.84 ? O7 P65 205 A 1 HETATM 11 C C8 P65 . . . F 4 -5.103 -0.217 11.743 1 12.02 ? C8 P65 205 A 1 HETATM 12 C C9 P65 . . . F 4 -5.362 1.2 11.23 1 13.01 ? C9 P65 205 A 1 HETATM 13 C C10 P65 . . . F 4 -4.806 2.235 12.2 1 14.09 ? C10 P65 205 A 1 HETATM 14 O O11 P65 . . . F 4 -3.423 2.049 12.166 1 15.25 ? O11 P65 205 A 1 HETATM 15 C C12 P65 . . . F 4 -2.685 2.676 13.173 1 17.44 ? C12 P65 205 A 1 HETATM 16 C C17 P65 . . . F 4 -3.254 3.647 13.982 1 18.31 ? C17 P65 205 A 1 HETATM 17 C C16 P65 . . . F 4 -2.476 4.233 14.965 1 18.85 ? C16 P65 205 A 1 HETATM 18 CL CL3 P65 . . . F 4 -3.182 5.483 16.014 1 30.32 ? CL3 P65 205 A 1 HETATM 19 C C15 P65 . . . F 4 -1.156 3.86 15.139 1 18.36 ? C15 P65 205 A 1 HETATM 20 CL CL2 P65 . . . F 4 -0.18 4.634 16.407 1 31.61 ? CL2 P65 205 A 1 HETATM 21 C C14 P65 . . . F 4 -0.587 2.891 14.334 1 18.2 ? C14 P65 205 A 1 HETATM 22 C C13 P65 . . . F 4 -1.362 2.305 13.355 1 17.84 ? C13 P65 205 A 1 HETATM 23 CL CL1 P65 . . . F 4 -0.667 1.06 12.309 1 23.11 ? CL1 P65 205 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #