data_5U28 # _model_server_result.job_id S0ZHctW-AuqynYc8J2BQwg _model_server_result.datetime_utc '2024-11-22 21:04:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u28 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5U28 # _exptl.entry_id 5U28 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 371.407 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(2,3-dihydro-1,4-benzodioxin-6-yl)-5-(morpholin-4-yl)-7H-thieno[3,2-b]pyran-7-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U28 _cell.length_a 43.972 _cell.length_b 59.151 _cell.length_c 63.675 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U28 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H17 N O5 S' _chem_comp.formula_weight 371.407 _chem_comp.id 82V _chem_comp.mon_nstd_flag . _chem_comp.name 3-(2,3-dihydro-1,4-benzodioxin-6-yl)-5-(morpholin-4-yl)-7H-thieno[3,2-b]pyran-7-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S14 C15 82V sing 1 n y S14 C13 82V sing 2 n y C15 C16 82V doub 3 n y O24 C23 82V sing 4 n n O24 C25 82V sing 5 n n C23 C22 82V sing 6 n n C26 C25 82V doub 7 n y C26 C17 82V sing 8 n y C16 C17 82V sing 9 n n C16 C12 82V sing 10 n y C25 C20 82V sing 11 n y C13 C02 82V sing 12 n n C13 C12 82V doub 13 n y O01 C02 82V doub 14 n n C17 C18 82V doub 15 n y C02 C03 82V sing 16 n n C12 O11 82V sing 17 n n C20 O21 82V sing 18 n n C20 C19 82V doub 19 n y C22 O21 82V sing 20 n n C18 C19 82V sing 21 n y O11 C04 82V sing 22 n n C03 C04 82V doub 23 n n C04 N05 82V sing 24 n n N05 C06 82V sing 25 n n N05 C10 82V sing 26 n n C06 C07 82V sing 27 n n C10 C09 82V sing 28 n n C07 O08 82V sing 29 n n C09 O08 82V sing 30 n n C10 H1 82V sing 31 n n C10 H2 82V sing 32 n n C15 H3 82V sing 33 n n C22 H4 82V sing 34 n n C22 H5 82V sing 35 n n C26 H6 82V sing 36 n n C03 H7 82V sing 37 n n C06 H11 82V sing 38 n n C06 H12 82V sing 39 n n C07 H13 82V sing 40 n n C07 H14 82V sing 41 n n C09 H15 82V sing 42 n n C09 H16 82V sing 43 n n C18 H17 82V sing 44 n n C19 H18 82V sing 45 n n C23 H19 82V sing 46 n n C23 H20 82V sing 47 n n # _atom_sites.entry_id 5U28 _atom_sites.fract_transf_matrix[1][1] 0.022742 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 82V A 1 201 1 82V LIG . C 3 PEG A 1 202 1 PEG PEG . D 4 SCN A 1 203 1 SCN SCN . E 5 HOH A 1 301 145 HOH HOH . E 5 HOH A 2 302 83 HOH HOH . E 5 HOH A 3 303 103 HOH HOH . E 5 HOH A 4 304 126 HOH HOH . E 5 HOH A 5 305 50 HOH HOH . E 5 HOH A 6 306 1 HOH HOH . E 5 HOH A 7 307 147 HOH HOH . E 5 HOH A 8 308 53 HOH HOH . E 5 HOH A 9 309 24 HOH HOH . E 5 HOH A 10 310 1 HOH HOH . E 5 HOH A 11 311 23 HOH HOH . E 5 HOH A 12 312 68 HOH HOH . E 5 HOH A 13 313 118 HOH HOH . E 5 HOH A 14 314 4 HOH HOH . E 5 HOH A 15 315 106 HOH HOH . E 5 HOH A 16 316 20 HOH HOH . E 5 HOH A 17 317 75 HOH HOH . E 5 HOH A 18 318 149 HOH HOH . E 5 HOH A 19 319 43 HOH HOH . E 5 HOH A 20 320 87 HOH HOH . E 5 HOH A 21 321 116 HOH HOH . E 5 HOH A 22 322 31 HOH HOH . E 5 HOH A 23 323 117 HOH HOH . E 5 HOH A 24 324 108 HOH HOH . E 5 HOH A 25 325 72 HOH HOH . E 5 HOH A 26 326 124 HOH HOH . E 5 HOH A 27 327 28 HOH HOH . E 5 HOH A 28 328 63 HOH HOH . E 5 HOH A 29 329 99 HOH HOH . E 5 HOH A 30 330 81 HOH HOH . E 5 HOH A 31 331 107 HOH HOH . E 5 HOH A 32 332 79 HOH HOH . E 5 HOH A 33 333 25 HOH HOH . E 5 HOH A 34 334 45 HOH HOH . E 5 HOH A 35 335 139 HOH HOH . E 5 HOH A 36 336 12 HOH HOH . E 5 HOH A 37 337 110 HOH HOH . E 5 HOH A 38 338 14 HOH HOH . E 5 HOH A 39 339 96 HOH HOH . E 5 HOH A 40 340 150 HOH HOH . E 5 HOH A 41 341 130 HOH HOH . E 5 HOH A 42 342 30 HOH HOH . E 5 HOH A 43 343 112 HOH HOH . E 5 HOH A 44 344 10 HOH HOH . E 5 HOH A 45 345 18 HOH HOH . E 5 HOH A 46 346 92 HOH HOH . E 5 HOH A 47 347 21 HOH HOH . E 5 HOH A 48 348 15 HOH HOH . E 5 HOH A 49 349 5 HOH HOH . E 5 HOH A 50 350 88 HOH HOH . E 5 HOH A 51 351 33 HOH HOH . E 5 HOH A 52 352 16 HOH HOH . E 5 HOH A 53 353 47 HOH HOH . E 5 HOH A 54 354 77 HOH HOH . E 5 HOH A 55 355 4 HOH HOH . E 5 HOH A 56 356 143 HOH HOH . E 5 HOH A 57 357 26 HOH HOH . E 5 HOH A 58 358 64 HOH HOH . E 5 HOH A 59 359 62 HOH HOH . E 5 HOH A 60 360 58 HOH HOH . E 5 HOH A 61 361 41 HOH HOH . E 5 HOH A 62 362 13 HOH HOH . E 5 HOH A 63 363 59 HOH HOH . E 5 HOH A 64 364 73 HOH HOH . E 5 HOH A 65 365 121 HOH HOH . E 5 HOH A 66 366 2 HOH HOH . E 5 HOH A 67 367 9 HOH HOH . E 5 HOH A 68 368 40 HOH HOH . E 5 HOH A 69 369 119 HOH HOH . E 5 HOH A 70 370 38 HOH HOH . E 5 HOH A 71 371 39 HOH HOH . E 5 HOH A 72 372 27 HOH HOH . E 5 HOH A 73 373 2 HOH HOH . E 5 HOH A 74 374 70 HOH HOH . E 5 HOH A 75 375 55 HOH HOH . E 5 HOH A 76 376 49 HOH HOH . E 5 HOH A 77 377 32 HOH HOH . E 5 HOH A 78 378 74 HOH HOH . E 5 HOH A 79 379 123 HOH HOH . E 5 HOH A 80 380 86 HOH HOH . E 5 HOH A 81 381 136 HOH HOH . E 5 HOH A 82 382 91 HOH HOH . E 5 HOH A 83 383 90 HOH HOH . E 5 HOH A 84 384 11 HOH HOH . E 5 HOH A 85 385 19 HOH HOH . E 5 HOH A 86 386 36 HOH HOH . E 5 HOH A 87 387 34 HOH HOH . E 5 HOH A 88 388 84 HOH HOH . E 5 HOH A 89 389 134 HOH HOH . E 5 HOH A 90 390 8 HOH HOH . E 5 HOH A 91 391 17 HOH HOH . E 5 HOH A 92 392 29 HOH HOH . E 5 HOH A 93 393 61 HOH HOH . E 5 HOH A 94 394 114 HOH HOH . E 5 HOH A 95 395 151 HOH HOH . E 5 HOH A 96 396 35 HOH HOH . E 5 HOH A 97 397 127 HOH HOH . E 5 HOH A 98 398 141 HOH HOH . E 5 HOH A 99 399 146 HOH HOH . E 5 HOH A 100 400 109 HOH HOH . E 5 HOH A 101 401 144 HOH HOH . E 5 HOH A 102 402 122 HOH HOH . E 5 HOH A 103 403 60 HOH HOH . E 5 HOH A 104 404 56 HOH HOH . E 5 HOH A 105 405 6 HOH HOH . E 5 HOH A 106 406 67 HOH HOH . E 5 HOH A 107 407 94 HOH HOH . E 5 HOH A 108 408 69 HOH HOH . E 5 HOH A 109 409 148 HOH HOH . E 5 HOH A 110 410 129 HOH HOH . E 5 HOH A 111 411 101 HOH HOH . E 5 HOH A 112 412 135 HOH HOH . E 5 HOH A 113 413 42 HOH HOH . E 5 HOH A 114 414 132 HOH HOH . E 5 HOH A 115 415 153 HOH HOH . E 5 HOH A 116 416 89 HOH HOH . E 5 HOH A 117 417 44 HOH HOH . E 5 HOH A 118 418 22 HOH HOH . E 5 HOH A 119 419 7 HOH HOH . E 5 HOH A 120 420 137 HOH HOH . E 5 HOH A 121 421 85 HOH HOH . E 5 HOH A 122 422 140 HOH HOH . E 5 HOH A 123 423 131 HOH HOH . E 5 HOH A 124 424 71 HOH HOH . E 5 HOH A 125 425 157 HOH HOH . E 5 HOH A 126 426 57 HOH HOH . E 5 HOH A 127 427 152 HOH HOH . E 5 HOH A 128 428 98 HOH HOH . E 5 HOH A 129 429 154 HOH HOH . E 5 HOH A 130 430 111 HOH HOH . E 5 HOH A 131 431 48 HOH HOH . E 5 HOH A 132 432 78 HOH HOH . E 5 HOH A 133 433 125 HOH HOH . E 5 HOH A 134 434 155 HOH HOH . E 5 HOH A 135 435 3 HOH HOH . E 5 HOH A 136 436 54 HOH HOH . E 5 HOH A 137 437 37 HOH HOH . E 5 HOH A 138 438 76 HOH HOH . E 5 HOH A 139 439 82 HOH HOH . E 5 HOH A 140 440 66 HOH HOH . E 5 HOH A 141 441 3 HOH HOH . E 5 HOH A 142 442 80 HOH HOH . E 5 HOH A 143 443 65 HOH HOH . E 5 HOH A 144 444 51 HOH HOH . E 5 HOH A 145 445 115 HOH HOH . E 5 HOH A 146 446 142 HOH HOH . E 5 HOH A 147 447 95 HOH HOH . E 5 HOH A 148 448 97 HOH HOH . E 5 HOH A 149 449 102 HOH HOH . E 5 HOH A 150 450 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 82V . . . B 2 -16.826 4.704 8.805 1 16.79 ? C10 82V 201 A 1 HETATM 2 C C13 82V . . . B 2 -17.546 2.814 3.997 1 11.58 ? C13 82V 201 A 1 HETATM 3 C C15 82V . . . B 2 -16.428 1.239 2.506 1 9.19 ? C15 82V 201 A 1 HETATM 4 C C17 82V . . . B 2 -14.769 0.255 4.118 1 10.78 ? C17 82V 201 A 1 HETATM 5 C C20 82V . . . B 2 -12.632 -1.528 4.844 1 12.71 ? C20 82V 201 A 1 HETATM 6 C C22 82V . . . B 2 -11.844 -3.752 4.948 1 17.24 ? C22 82V 201 A 1 HETATM 7 C C26 82V . . . B 2 -14.667 -1.056 3.665 1 14.56 ? C26 82V 201 A 1 HETATM 8 O O01 82V . . . B 2 -19.337 4.452 4.1 1 13.71 ? O01 82V 201 A 1 HETATM 9 C C02 82V . . . B 2 -18.404 3.834 4.612 1 12.91 ? C02 82V 201 A 1 HETATM 10 C C03 82V . . . B 2 -17.991 4.038 6.035 1 11.04 ? C03 82V 201 A 1 HETATM 11 C C04 82V . . . B 2 -16.906 3.474 6.554 1 12.48 ? C04 82V 201 A 1 HETATM 12 N N05 82V . . . B 2 -16.454 3.581 7.904 1 14.05 ? N05 82V 201 A 1 HETATM 13 C C06 82V . . . B 2 -15.571 2.522 8.546 1 21.84 ? C06 82V 201 A 1 HETATM 14 C C07 82V . . . B 2 -14.955 2.841 9.935 1 21.34 ? C07 82V 201 A 1 HETATM 15 O O08 82V . . . B 2 -14.942 4.191 10.219 1 17.09 ? O08 82V 201 A 1 HETATM 16 C C09 82V . . . B 2 -16.219 4.684 10.21 1 25.33 ? C09 82V 201 A 1 HETATM 17 O O11 82V . . . B 2 -16.325 2.387 5.923 1 13.76 ? O11 82V 201 A 1 HETATM 18 C C12 82V . . . B 2 -16.579 2.14 4.623 1 13.32 ? C12 82V 201 A 1 HETATM 19 S S14 82V . . . B 2 -17.696 2.362 2.333 1 12.88 ? S14 82V 201 A 1 HETATM 20 C C16 82V . . . B 2 -15.876 1.172 3.738 1 11.06 ? C16 82V 201 A 1 HETATM 21 C C18 82V . . . B 2 -13.741 0.644 4.994 1 11.68 ? C18 82V 201 A 1 HETATM 22 C C19 82V . . . B 2 -12.688 -0.229 5.35 1 12.67 ? C19 82V 201 A 1 HETATM 23 O O21 82V . . . B 2 -11.609 -2.363 5.178 1 14.42 ? O21 82V 201 A 1 HETATM 24 C C23 82V . . . B 2 -12.526 -4.023 3.65 1 19.22 ? C23 82V 201 A 1 HETATM 25 O O24 82V . . . B 2 -13.659 -3.203 3.455 1 16.44 ? O24 82V 201 A 1 HETATM 26 C C25 82V . . . B 2 -13.644 -1.954 3.98 1 13.43 ? C25 82V 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #