data_5U2K # _model_server_result.job_id LHq5acRNozmw8vNvqbTzgg _model_server_result.datetime_utc '2024-12-22 06:28:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5U2K # _exptl.entry_id 5U2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5U2K _cell.length_a 75.424 _cell.length_b 75.424 _cell.length_c 93.482 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 37.712 65.3191 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -37.712 65.3191 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 169 n n C1 C2 EDO sing 170 n n C1 H11 EDO sing 171 n n C1 H12 EDO sing 172 n n O1 HO1 EDO sing 173 n n C2 O2 EDO sing 174 n n C2 H21 EDO sing 175 n n C2 H22 EDO sing 176 n n O2 HO2 EDO sing 177 n n # _atom_sites.entry_id 5U2K _atom_sites.fract_transf_matrix[1][1] 0.013258 _atom_sites.fract_transf_matrix[1][2] 0.007655 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 3 EDO EDO . C 2 EDO A 1 202 9 EDO EDO . D 2 EDO A 1 203 12 EDO EDO . E 2 EDO A 1 204 13 EDO EDO . F 2 EDO A 1 205 14 EDO EDO . G 3 CL A 1 206 1 CL CL . H 4 PO4 A 1 207 1 PO4 PO4 . I 5 COA A 1 208 1 COA 30N . J 6 HOH A 1 301 664 HOH HOH . J 6 HOH A 2 302 355 HOH HOH . J 6 HOH A 3 303 464 HOH HOH . J 6 HOH A 4 304 401 HOH HOH . J 6 HOH A 5 305 726 HOH HOH . J 6 HOH A 6 306 83 HOH HOH . J 6 HOH A 7 307 56 HOH HOH . J 6 HOH A 8 308 110 HOH HOH . J 6 HOH A 9 309 125 HOH HOH . J 6 HOH A 10 310 740 HOH HOH . J 6 HOH A 11 311 144 HOH HOH . J 6 HOH A 12 312 47 HOH HOH . J 6 HOH A 13 313 61 HOH HOH . J 6 HOH A 14 314 799 HOH HOH . J 6 HOH A 15 315 443 HOH HOH . J 6 HOH A 16 316 6 HOH HOH . J 6 HOH A 17 317 651 HOH HOH . J 6 HOH A 18 318 100 HOH HOH . J 6 HOH A 19 319 168 HOH HOH . J 6 HOH A 20 320 708 HOH HOH . J 6 HOH A 21 321 804 HOH HOH . J 6 HOH A 22 322 332 HOH HOH . J 6 HOH A 23 323 69 HOH HOH . J 6 HOH A 24 324 34 HOH HOH . J 6 HOH A 25 325 143 HOH HOH . J 6 HOH A 26 326 398 HOH HOH . J 6 HOH A 27 327 667 HOH HOH . J 6 HOH A 28 328 783 HOH HOH . J 6 HOH A 29 329 157 HOH HOH . J 6 HOH A 30 330 27 HOH HOH . J 6 HOH A 31 331 123 HOH HOH . J 6 HOH A 32 332 211 HOH HOH . J 6 HOH A 33 333 10 HOH HOH . J 6 HOH A 34 334 37 HOH HOH . J 6 HOH A 35 335 338 HOH HOH . J 6 HOH A 36 336 668 HOH HOH . J 6 HOH A 37 337 91 HOH HOH . J 6 HOH A 38 338 22 HOH HOH . J 6 HOH A 39 339 74 HOH HOH . J 6 HOH A 40 340 11 HOH HOH . J 6 HOH A 41 341 759 HOH HOH . J 6 HOH A 42 342 406 HOH HOH . J 6 HOH A 43 343 103 HOH HOH . J 6 HOH A 44 344 694 HOH HOH . J 6 HOH A 45 345 66 HOH HOH . J 6 HOH A 46 346 5 HOH HOH . J 6 HOH A 47 347 798 HOH HOH . J 6 HOH A 48 348 171 HOH HOH . J 6 HOH A 49 349 149 HOH HOH . J 6 HOH A 50 350 321 HOH HOH . J 6 HOH A 51 351 687 HOH HOH . J 6 HOH A 52 352 778 HOH HOH . J 6 HOH A 53 353 102 HOH HOH . J 6 HOH A 54 354 23 HOH HOH . J 6 HOH A 55 355 24 HOH HOH . J 6 HOH A 56 356 181 HOH HOH . J 6 HOH A 57 357 516 HOH HOH . J 6 HOH A 58 358 12 HOH HOH . J 6 HOH A 59 359 40 HOH HOH . J 6 HOH A 60 360 761 HOH HOH . J 6 HOH A 61 361 18 HOH HOH . J 6 HOH A 62 362 190 HOH HOH . J 6 HOH A 63 363 120 HOH HOH . J 6 HOH A 64 364 8 HOH HOH . J 6 HOH A 65 365 90 HOH HOH . J 6 HOH A 66 366 672 HOH HOH . J 6 HOH A 67 367 169 HOH HOH . J 6 HOH A 68 368 101 HOH HOH . J 6 HOH A 69 369 119 HOH HOH . J 6 HOH A 70 370 20 HOH HOH . J 6 HOH A 71 371 750 HOH HOH . J 6 HOH A 72 372 174 HOH HOH . J 6 HOH A 73 373 63 HOH HOH . J 6 HOH A 74 374 751 HOH HOH . J 6 HOH A 75 375 702 HOH HOH . J 6 HOH A 76 376 326 HOH HOH . J 6 HOH A 77 377 472 HOH HOH . J 6 HOH A 78 378 686 HOH HOH . J 6 HOH A 79 379 508 HOH HOH . J 6 HOH A 80 380 67 HOH HOH . J 6 HOH A 81 381 179 HOH HOH . J 6 HOH A 82 382 764 HOH HOH . J 6 HOH A 83 383 742 HOH HOH . J 6 HOH A 84 384 210 HOH HOH . J 6 HOH A 85 385 4 HOH HOH . J 6 HOH A 86 386 70 HOH HOH . J 6 HOH A 87 387 118 HOH HOH . J 6 HOH A 88 388 673 HOH HOH . J 6 HOH A 89 389 72 HOH HOH . J 6 HOH A 90 390 49 HOH HOH . J 6 HOH A 91 391 800 HOH HOH . J 6 HOH A 92 392 46 HOH HOH . J 6 HOH A 93 393 724 HOH HOH . J 6 HOH A 94 394 7 HOH HOH . J 6 HOH A 95 395 38 HOH HOH . J 6 HOH A 96 396 53 HOH HOH . J 6 HOH A 97 397 92 HOH HOH . J 6 HOH A 98 398 104 HOH HOH . J 6 HOH A 99 399 68 HOH HOH . J 6 HOH A 100 400 188 HOH HOH . J 6 HOH A 101 401 645 HOH HOH . J 6 HOH A 102 402 337 HOH HOH . J 6 HOH A 103 403 26 HOH HOH . J 6 HOH A 104 404 16 HOH HOH . J 6 HOH A 105 405 695 HOH HOH . J 6 HOH A 106 406 33 HOH HOH . J 6 HOH A 107 407 404 HOH HOH . J 6 HOH A 108 408 711 HOH HOH . J 6 HOH A 109 409 9 HOH HOH . J 6 HOH A 110 410 653 HOH HOH . J 6 HOH A 111 411 772 HOH HOH . J 6 HOH A 112 412 768 HOH HOH . J 6 HOH A 113 413 476 HOH HOH . J 6 HOH A 114 414 689 HOH HOH . J 6 HOH A 115 415 791 HOH HOH . J 6 HOH A 116 416 160 HOH HOH . J 6 HOH A 117 417 139 HOH HOH . J 6 HOH A 118 418 428 HOH HOH . J 6 HOH A 119 419 133 HOH HOH . J 6 HOH A 120 420 57 HOH HOH . J 6 HOH A 121 421 763 HOH HOH . J 6 HOH A 122 422 736 HOH HOH . J 6 HOH A 123 423 59 HOH HOH . J 6 HOH A 124 424 803 HOH HOH . J 6 HOH A 125 425 801 HOH HOH . J 6 HOH A 126 426 775 HOH HOH . J 6 HOH A 127 427 400 HOH HOH . J 6 HOH A 128 428 776 HOH HOH . J 6 HOH A 129 429 787 HOH HOH . J 6 HOH A 130 430 159 HOH HOH . J 6 HOH A 131 431 85 HOH HOH . J 6 HOH A 132 432 207 HOH HOH . J 6 HOH A 133 433 502 HOH HOH . J 6 HOH A 134 434 806 HOH HOH . J 6 HOH A 135 435 14 HOH HOH . J 6 HOH A 136 436 151 HOH HOH . J 6 HOH A 137 437 79 HOH HOH . J 6 HOH A 138 438 146 HOH HOH . J 6 HOH A 139 439 64 HOH HOH . J 6 HOH A 140 440 48 HOH HOH . J 6 HOH A 141 441 489 HOH HOH . J 6 HOH A 142 442 679 HOH HOH . J 6 HOH A 143 443 677 HOH HOH . J 6 HOH A 144 444 484 HOH HOH . J 6 HOH A 145 445 50 HOH HOH . J 6 HOH A 146 446 39 HOH HOH . J 6 HOH A 147 447 148 HOH HOH . J 6 HOH A 148 448 156 HOH HOH . J 6 HOH A 149 449 796 HOH HOH . J 6 HOH A 150 450 229 HOH HOH . J 6 HOH A 151 451 524 HOH HOH . J 6 HOH A 152 452 785 HOH HOH . J 6 HOH A 153 453 507 HOH HOH . J 6 HOH A 154 454 52 HOH HOH . J 6 HOH A 155 455 725 HOH HOH . J 6 HOH A 156 456 55 HOH HOH . J 6 HOH A 157 457 501 HOH HOH . J 6 HOH A 158 458 789 HOH HOH . J 6 HOH A 159 459 30 HOH HOH . J 6 HOH A 160 460 192 HOH HOH . J 6 HOH A 161 461 733 HOH HOH . J 6 HOH A 162 462 731 HOH HOH . J 6 HOH A 163 463 333 HOH HOH . J 6 HOH A 164 464 766 HOH HOH . J 6 HOH A 165 465 779 HOH HOH . J 6 HOH A 166 466 21 HOH HOH . J 6 HOH A 167 467 478 HOH HOH . J 6 HOH A 168 468 17 HOH HOH . J 6 HOH A 169 469 134 HOH HOH . J 6 HOH A 170 470 138 HOH HOH . J 6 HOH A 171 471 802 HOH HOH . J 6 HOH A 172 472 339 HOH HOH . J 6 HOH A 173 473 152 HOH HOH . J 6 HOH A 174 474 176 HOH HOH . J 6 HOH A 175 475 62 HOH HOH . J 6 HOH A 176 476 499 HOH HOH . J 6 HOH A 177 477 422 HOH HOH . J 6 HOH A 178 478 19 HOH HOH . J 6 HOH A 179 479 177 HOH HOH . J 6 HOH A 180 480 795 HOH HOH . J 6 HOH A 181 481 184 HOH HOH . J 6 HOH A 182 482 71 HOH HOH . J 6 HOH A 183 483 746 HOH HOH . J 6 HOH A 184 484 647 HOH HOH . J 6 HOH A 185 485 334 HOH HOH . J 6 HOH A 186 486 646 HOH HOH . J 6 HOH A 187 487 343 HOH HOH . J 6 HOH A 188 488 797 HOH HOH . J 6 HOH A 189 489 805 HOH HOH . J 6 HOH A 190 490 481 HOH HOH . J 6 HOH A 191 491 360 HOH HOH . J 6 HOH A 192 492 198 HOH HOH . J 6 HOH A 193 493 737 HOH HOH . J 6 HOH A 194 494 364 HOH HOH . J 6 HOH A 195 495 285 HOH HOH . J 6 HOH A 196 496 792 HOH HOH . J 6 HOH A 197 497 357 HOH HOH . J 6 HOH A 198 498 351 HOH HOH . J 6 HOH A 199 499 370 HOH HOH . J 6 HOH A 200 500 58 HOH HOH . J 6 HOH A 201 501 126 HOH HOH . J 6 HOH A 202 502 793 HOH HOH . J 6 HOH A 203 503 684 HOH HOH . J 6 HOH A 204 504 399 HOH HOH . J 6 HOH A 205 505 291 HOH HOH . J 6 HOH A 206 506 96 HOH HOH . J 6 HOH A 207 507 60 HOH HOH . J 6 HOH A 208 508 685 HOH HOH . J 6 HOH A 209 509 108 HOH HOH . J 6 HOH A 210 510 294 HOH HOH . J 6 HOH A 211 511 625 HOH HOH . J 6 HOH A 212 512 511 HOH HOH . J 6 HOH A 213 513 373 HOH HOH . J 6 HOH A 214 514 782 HOH HOH . J 6 HOH A 215 515 324 HOH HOH . J 6 HOH A 216 516 777 HOH HOH . J 6 HOH A 217 517 448 HOH HOH . J 6 HOH A 218 518 696 HOH HOH . J 6 HOH A 219 519 644 HOH HOH . J 6 HOH A 220 520 773 HOH HOH . J 6 HOH A 221 521 738 HOH HOH . J 6 HOH A 222 522 656 HOH HOH . J 6 HOH A 223 523 477 HOH HOH . J 6 HOH A 224 524 784 HOH HOH . J 6 HOH A 225 525 293 HOH HOH . J 6 HOH A 226 526 676 HOH HOH . J 6 HOH A 227 527 788 HOH HOH . J 6 HOH A 228 528 692 HOH HOH . J 6 HOH A 229 529 769 HOH HOH . J 6 HOH A 230 530 203 HOH HOH . J 6 HOH A 231 531 290 HOH HOH . J 6 HOH A 232 532 281 HOH HOH . J 6 HOH A 233 533 655 HOH HOH . J 6 HOH A 234 534 652 HOH HOH . J 6 HOH A 235 535 323 HOH HOH . J 6 HOH A 236 536 51 HOH HOH . J 6 HOH A 237 537 790 HOH HOH . J 6 HOH A 238 538 488 HOH HOH . J 6 HOH A 239 539 654 HOH HOH . J 6 HOH A 240 540 407 HOH HOH . J 6 HOH A 241 541 743 HOH HOH . J 6 HOH A 242 542 657 HOH HOH . J 6 HOH A 243 543 794 HOH HOH . J 6 HOH A 244 544 762 HOH HOH . J 6 HOH A 245 545 770 HOH HOH . J 6 HOH A 246 546 699 HOH HOH . J 6 HOH A 247 547 786 HOH HOH . J 6 HOH A 248 548 760 HOH HOH . J 6 HOH A 249 549 459 HOH HOH . J 6 HOH A 250 550 734 HOH HOH . J 6 HOH A 251 551 362 HOH HOH . J 6 HOH A 252 552 739 HOH HOH . J 6 HOH A 253 553 669 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -32.409 42.188 23.675 0.8 42.16 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . D 2 -32.328 43.558 23.253 0.8 44.15 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . D 2 -32.097 41.238 22.522 0.8 42.33 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . D 2 -31.088 41.777 21.65 0.8 42.56 ? O2 EDO 203 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #