data_5U35 # _model_server_result.job_id EgynUo8ea7u6B3hnpDrqAg _model_server_result.datetime_utc '2024-12-21 12:26:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":204}' # _entry.id 5U35 # _exptl.entry_id 5U35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.78 _cell.angle_gamma 90 _cell.entry_id 5U35 _cell.length_a 38.01 _cell.length_b 33.2 _cell.length_c 86.59 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 M O HOH . A HOH 348 1_555 L NA NA . B NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc2 B OG SER 104 B SER 101 1_555 L NA NA . B NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.155 ? metalc ? metalc3 L NA NA . B NA 204 1_555 N O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5U35 _atom_sites.fract_transf_matrix[1][1] 0.026309 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000818 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011554 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MXE A 1 201 2 MXE MXE . D 2 MXE A 1 202 3 MXE MXE . E 2 MXE A 1 203 4 MXE MXE . F 2 MXE A 1 204 5 MXE MXE . G 3 CL A 1 205 1 CL CL . H 4 PG4 A 1 206 1 PG4 PG4 . I 5 PG6 B 1 201 1 PG6 PG6 . J 2 MXE B 1 202 1 MXE MXE . K 3 CL B 1 203 1 CL CL . L 6 NA B 1 204 1 NA NA . M 7 HOH A 1 301 128 HOH HOH . M 7 HOH A 2 302 1 HOH HOH . M 7 HOH A 3 303 27 HOH HOH . M 7 HOH A 4 304 44 HOH HOH . M 7 HOH A 5 305 51 HOH HOH . M 7 HOH A 6 306 35 HOH HOH . M 7 HOH A 7 307 121 HOH HOH . M 7 HOH A 8 308 40 HOH HOH . M 7 HOH A 9 309 45 HOH HOH . M 7 HOH A 10 310 11 HOH HOH . M 7 HOH A 11 311 28 HOH HOH . M 7 HOH A 12 312 25 HOH HOH . M 7 HOH A 13 313 137 HOH HOH . M 7 HOH A 14 314 5 HOH HOH . M 7 HOH A 15 315 104 HOH HOH . M 7 HOH A 16 316 17 HOH HOH . M 7 HOH A 17 317 54 HOH HOH . M 7 HOH A 18 318 39 HOH HOH . M 7 HOH A 19 319 24 HOH HOH . M 7 HOH A 20 320 36 HOH HOH . M 7 HOH A 21 321 12 HOH HOH . M 7 HOH A 22 322 87 HOH HOH . M 7 HOH A 23 323 89 HOH HOH . M 7 HOH A 24 324 108 HOH HOH . M 7 HOH A 25 325 130 HOH HOH . M 7 HOH A 26 326 52 HOH HOH . M 7 HOH A 27 327 7 HOH HOH . M 7 HOH A 28 328 114 HOH HOH . M 7 HOH A 29 329 13 HOH HOH . M 7 HOH A 30 330 116 HOH HOH . M 7 HOH A 31 331 50 HOH HOH . M 7 HOH A 32 332 14 HOH HOH . M 7 HOH A 33 333 30 HOH HOH . M 7 HOH A 34 334 119 HOH HOH . M 7 HOH A 35 335 115 HOH HOH . M 7 HOH A 36 336 103 HOH HOH . M 7 HOH A 37 337 22 HOH HOH . M 7 HOH A 38 338 21 HOH HOH . M 7 HOH A 39 339 66 HOH HOH . M 7 HOH A 40 340 34 HOH HOH . M 7 HOH A 41 341 62 HOH HOH . M 7 HOH A 42 342 47 HOH HOH . M 7 HOH A 43 343 6 HOH HOH . M 7 HOH A 44 344 99 HOH HOH . M 7 HOH A 45 345 61 HOH HOH . M 7 HOH A 46 346 19 HOH HOH . M 7 HOH A 47 347 97 HOH HOH . M 7 HOH A 48 348 64 HOH HOH . M 7 HOH A 49 349 78 HOH HOH . M 7 HOH A 50 350 123 HOH HOH . M 7 HOH A 51 351 75 HOH HOH . M 7 HOH A 52 352 59 HOH HOH . M 7 HOH A 53 353 70 HOH HOH . M 7 HOH A 54 354 23 HOH HOH . M 7 HOH A 55 355 124 HOH HOH . M 7 HOH A 56 356 81 HOH HOH . M 7 HOH A 57 357 95 HOH HOH . M 7 HOH A 58 358 46 HOH HOH . M 7 HOH A 59 359 9 HOH HOH . M 7 HOH A 60 360 109 HOH HOH . M 7 HOH A 61 361 136 HOH HOH . M 7 HOH A 62 362 98 HOH HOH . M 7 HOH A 63 363 91 HOH HOH . M 7 HOH A 64 364 122 HOH HOH . M 7 HOH A 65 365 68 HOH HOH . M 7 HOH A 66 366 134 HOH HOH . M 7 HOH A 67 367 83 HOH HOH . M 7 HOH A 68 368 125 HOH HOH . M 7 HOH A 69 369 110 HOH HOH . M 7 HOH A 70 370 106 HOH HOH . M 7 HOH A 71 371 71 HOH HOH . M 7 HOH A 72 372 140 HOH HOH . M 7 HOH A 73 373 126 HOH HOH . M 7 HOH A 74 374 135 HOH HOH . M 7 HOH A 75 375 120 HOH HOH . M 7 HOH A 76 376 74 HOH HOH . M 7 HOH A 77 377 113 HOH HOH . M 7 HOH A 78 378 96 HOH HOH . M 7 HOH A 79 379 84 HOH HOH . M 7 HOH A 80 380 37 HOH HOH . M 7 HOH A 81 381 112 HOH HOH . M 7 HOH A 82 382 90 HOH HOH . N 7 HOH B 1 301 65 HOH HOH . N 7 HOH B 2 302 53 HOH HOH . N 7 HOH B 3 303 63 HOH HOH . N 7 HOH B 4 304 60 HOH HOH . N 7 HOH B 5 305 2 HOH HOH . N 7 HOH B 6 306 102 HOH HOH . N 7 HOH B 7 307 48 HOH HOH . N 7 HOH B 8 308 41 HOH HOH . N 7 HOH B 9 309 58 HOH HOH . N 7 HOH B 10 310 88 HOH HOH . N 7 HOH B 11 311 67 HOH HOH . N 7 HOH B 12 312 56 HOH HOH . N 7 HOH B 13 313 31 HOH HOH . N 7 HOH B 14 314 101 HOH HOH . N 7 HOH B 15 315 29 HOH HOH . N 7 HOH B 16 316 3 HOH HOH . N 7 HOH B 17 317 100 HOH HOH . N 7 HOH B 18 318 127 HOH HOH . N 7 HOH B 19 319 129 HOH HOH . N 7 HOH B 20 320 42 HOH HOH . N 7 HOH B 21 321 8 HOH HOH . N 7 HOH B 22 322 33 HOH HOH . N 7 HOH B 23 323 94 HOH HOH . N 7 HOH B 24 324 93 HOH HOH . N 7 HOH B 25 325 82 HOH HOH . N 7 HOH B 26 326 43 HOH HOH . N 7 HOH B 27 327 76 HOH HOH . N 7 HOH B 28 328 16 HOH HOH . N 7 HOH B 29 329 20 HOH HOH . N 7 HOH B 30 330 15 HOH HOH . N 7 HOH B 31 331 18 HOH HOH . N 7 HOH B 32 332 38 HOH HOH . N 7 HOH B 33 333 4 HOH HOH . N 7 HOH B 34 334 26 HOH HOH . N 7 HOH B 35 335 57 HOH HOH . N 7 HOH B 36 336 80 HOH HOH . N 7 HOH B 37 337 10 HOH HOH . N 7 HOH B 38 338 69 HOH HOH . N 7 HOH B 39 339 79 HOH HOH . N 7 HOH B 40 340 49 HOH HOH . N 7 HOH B 41 341 55 HOH HOH . N 7 HOH B 42 342 139 HOH HOH . N 7 HOH B 43 343 73 HOH HOH . N 7 HOH B 44 344 32 HOH HOH . N 7 HOH B 45 345 107 HOH HOH . N 7 HOH B 46 346 72 HOH HOH . N 7 HOH B 47 347 138 HOH HOH . N 7 HOH B 48 348 117 HOH HOH . N 7 HOH B 49 349 92 HOH HOH . N 7 HOH B 50 350 111 HOH HOH . N 7 HOH B 51 351 133 HOH HOH . N 7 HOH B 52 352 131 HOH HOH . N 7 HOH B 53 353 77 HOH HOH . N 7 HOH B 54 354 118 HOH HOH . N 7 HOH B 55 355 85 HOH HOH . N 7 HOH B 56 356 105 HOH HOH . N 7 HOH B 57 357 132 HOH HOH . N 7 HOH B 58 358 86 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 6 _atom_site.Cartn_x 0.574 _atom_site.Cartn_y -3.408 _atom_site.Cartn_z -24.481 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 204 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #