data_5U3B # _model_server_result.job_id '_O8zS9Kwpj1-SYW2IS2hNw' _model_server_result.datetime_utc '2024-11-30 18:52:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 5U3B # _exptl.entry_id 5U3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U3B _cell.length_a 35.826 _cell.length_b 98.432 _cell.length_c 165.187 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 78 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc2 A NE2 HIS 237 A HIS 237 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc3 A OD1 ASP 241 A ASP 241 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 C ZN ZN . A ZN 501 1_555 D O1 7TD . A 7TD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc5 C ZN ZN . A ZN 501 1_555 D O4 7TD . A 7TD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc6 B NE2 HIS 78 B HIS 78 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc7 B NE2 HIS 237 B HIS 237 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc8 B OD1 ASP 241 B ASP 241 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc9 F ZN ZN . B ZN 501 1_555 G O1 7TD . B 7TD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc10 F ZN ZN . B ZN 501 1_555 G O4 7TD . B 7TD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5U3B _atom_sites.fract_transf_matrix[1][1] 0.027913 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 501 ZN ZN . D 3 7TD A 1 502 1 7TD LI1 . E 4 EPE A 1 503 101 EPE EPE . F 2 ZN B 1 501 501 ZN ZN . G 3 7TD B 1 502 1 7TD LI1 . H 4 EPE B 1 503 102 EPE EPE . I 5 HOH A 1 601 160 HOH HOH . I 5 HOH A 2 602 44 HOH HOH . I 5 HOH A 3 603 121 HOH HOH . I 5 HOH A 4 604 14 HOH HOH . I 5 HOH A 5 605 52 HOH HOH . I 5 HOH A 6 606 269 HOH HOH . I 5 HOH A 7 607 209 HOH HOH . I 5 HOH A 8 608 158 HOH HOH . I 5 HOH A 9 609 88 HOH HOH . I 5 HOH A 10 610 205 HOH HOH . I 5 HOH A 11 611 151 HOH HOH . I 5 HOH A 12 612 50 HOH HOH . I 5 HOH A 13 613 227 HOH HOH . I 5 HOH A 14 614 2 HOH HOH . I 5 HOH A 15 615 66 HOH HOH . I 5 HOH A 16 616 173 HOH HOH . I 5 HOH A 17 617 72 HOH HOH . I 5 HOH A 18 618 221 HOH HOH . I 5 HOH A 19 619 193 HOH HOH . I 5 HOH A 20 620 243 HOH HOH . I 5 HOH A 21 621 47 HOH HOH . I 5 HOH A 22 622 86 HOH HOH . I 5 HOH A 23 623 233 HOH HOH . I 5 HOH A 24 624 46 HOH HOH . I 5 HOH A 25 625 254 HOH HOH . I 5 HOH A 26 626 152 HOH HOH . I 5 HOH A 27 627 89 HOH HOH . I 5 HOH A 28 628 39 HOH HOH . I 5 HOH A 29 629 126 HOH HOH . I 5 HOH A 30 630 110 HOH HOH . I 5 HOH A 31 631 90 HOH HOH . I 5 HOH A 32 632 81 HOH HOH . I 5 HOH A 33 633 236 HOH HOH . I 5 HOH A 34 634 181 HOH HOH . I 5 HOH A 35 635 100 HOH HOH . I 5 HOH A 36 636 135 HOH HOH . I 5 HOH A 37 637 228 HOH HOH . I 5 HOH A 38 638 186 HOH HOH . I 5 HOH A 39 639 32 HOH HOH . I 5 HOH A 40 640 106 HOH HOH . I 5 HOH A 41 641 94 HOH HOH . I 5 HOH A 42 642 6 HOH HOH . I 5 HOH A 43 643 191 HOH HOH . I 5 HOH A 44 644 27 HOH HOH . I 5 HOH A 45 645 183 HOH HOH . I 5 HOH A 46 646 214 HOH HOH . I 5 HOH A 47 647 188 HOH HOH . I 5 HOH A 48 648 247 HOH HOH . I 5 HOH A 49 649 170 HOH HOH . I 5 HOH A 50 650 102 HOH HOH . I 5 HOH A 51 651 150 HOH HOH . I 5 HOH A 52 652 274 HOH HOH . I 5 HOH A 53 653 220 HOH HOH . I 5 HOH A 54 654 211 HOH HOH . I 5 HOH A 55 655 11 HOH HOH . I 5 HOH A 56 656 182 HOH HOH . I 5 HOH A 57 657 271 HOH HOH . I 5 HOH A 58 658 189 HOH HOH . I 5 HOH A 59 659 139 HOH HOH . I 5 HOH A 60 660 161 HOH HOH . I 5 HOH A 61 661 54 HOH HOH . I 5 HOH A 62 662 69 HOH HOH . I 5 HOH A 63 663 101 HOH HOH . I 5 HOH A 64 664 63 HOH HOH . I 5 HOH A 65 665 92 HOH HOH . I 5 HOH A 66 666 74 HOH HOH . I 5 HOH A 67 667 36 HOH HOH . I 5 HOH A 68 668 109 HOH HOH . I 5 HOH A 69 669 147 HOH HOH . I 5 HOH A 70 670 60 HOH HOH . I 5 HOH A 71 671 19 HOH HOH . I 5 HOH A 72 672 97 HOH HOH . I 5 HOH A 73 673 123 HOH HOH . I 5 HOH A 74 674 49 HOH HOH . I 5 HOH A 75 675 12 HOH HOH . I 5 HOH A 76 676 122 HOH HOH . I 5 HOH A 77 677 249 HOH HOH . I 5 HOH A 78 678 38 HOH HOH . I 5 HOH A 79 679 246 HOH HOH . I 5 HOH A 80 680 61 HOH HOH . I 5 HOH A 81 681 98 HOH HOH . I 5 HOH A 82 682 144 HOH HOH . I 5 HOH A 83 683 172 HOH HOH . I 5 HOH A 84 684 133 HOH HOH . I 5 HOH A 85 685 16 HOH HOH . I 5 HOH A 86 686 223 HOH HOH . I 5 HOH A 87 687 59 HOH HOH . I 5 HOH A 88 688 76 HOH HOH . I 5 HOH A 89 689 192 HOH HOH . I 5 HOH A 90 690 218 HOH HOH . I 5 HOH A 91 691 240 HOH HOH . I 5 HOH A 92 692 118 HOH HOH . I 5 HOH A 93 693 56 HOH HOH . I 5 HOH A 94 694 103 HOH HOH . I 5 HOH A 95 695 178 HOH HOH . I 5 HOH A 96 696 95 HOH HOH . I 5 HOH A 97 697 200 HOH HOH . I 5 HOH A 98 698 9 HOH HOH . I 5 HOH A 99 699 225 HOH HOH . I 5 HOH A 100 700 65 HOH HOH . I 5 HOH A 101 701 276 HOH HOH . I 5 HOH A 102 702 202 HOH HOH . I 5 HOH A 103 703 82 HOH HOH . I 5 HOH A 104 704 58 HOH HOH . I 5 HOH A 105 705 215 HOH HOH . I 5 HOH A 106 706 238 HOH HOH . I 5 HOH A 107 707 83 HOH HOH . I 5 HOH A 108 708 68 HOH HOH . I 5 HOH A 109 709 80 HOH HOH . I 5 HOH A 110 710 207 HOH HOH . I 5 HOH A 111 711 13 HOH HOH . I 5 HOH A 112 712 146 HOH HOH . I 5 HOH A 113 713 18 HOH HOH . I 5 HOH A 114 714 117 HOH HOH . I 5 HOH A 115 715 79 HOH HOH . I 5 HOH A 116 716 174 HOH HOH . I 5 HOH A 117 717 256 HOH HOH . I 5 HOH A 118 718 1 HOH HOH . I 5 HOH A 119 719 43 HOH HOH . I 5 HOH A 120 720 280 HOH HOH . I 5 HOH A 121 721 165 HOH HOH . I 5 HOH A 122 722 272 HOH HOH . I 5 HOH A 123 723 168 HOH HOH . I 5 HOH A 124 724 253 HOH HOH . I 5 HOH A 125 725 67 HOH HOH . I 5 HOH A 126 726 196 HOH HOH . I 5 HOH A 127 727 279 HOH HOH . I 5 HOH A 128 728 197 HOH HOH . I 5 HOH A 129 729 134 HOH HOH . I 5 HOH A 130 730 252 HOH HOH . I 5 HOH A 131 731 268 HOH HOH . I 5 HOH A 132 732 212 HOH HOH . I 5 HOH A 133 733 113 HOH HOH . I 5 HOH A 134 734 84 HOH HOH . I 5 HOH A 135 735 267 HOH HOH . I 5 HOH A 136 736 242 HOH HOH . I 5 HOH A 137 737 273 HOH HOH . I 5 HOH A 138 738 275 HOH HOH . J 5 HOH B 1 601 270 HOH HOH . J 5 HOH B 2 602 25 HOH HOH . J 5 HOH B 3 603 37 HOH HOH . J 5 HOH B 4 604 57 HOH HOH . J 5 HOH B 5 605 85 HOH HOH . J 5 HOH B 6 606 128 HOH HOH . J 5 HOH B 7 607 145 HOH HOH . J 5 HOH B 8 608 26 HOH HOH . J 5 HOH B 9 609 222 HOH HOH . J 5 HOH B 10 610 105 HOH HOH . J 5 HOH B 11 611 162 HOH HOH . J 5 HOH B 12 612 96 HOH HOH . J 5 HOH B 13 613 199 HOH HOH . J 5 HOH B 14 614 35 HOH HOH . J 5 HOH B 15 615 10 HOH HOH . J 5 HOH B 16 616 107 HOH HOH . J 5 HOH B 17 617 230 HOH HOH . J 5 HOH B 18 618 231 HOH HOH . J 5 HOH B 19 619 132 HOH HOH . J 5 HOH B 20 620 34 HOH HOH . J 5 HOH B 21 621 78 HOH HOH . J 5 HOH B 22 622 217 HOH HOH . J 5 HOH B 23 623 257 HOH HOH . J 5 HOH B 24 624 187 HOH HOH . J 5 HOH B 25 625 111 HOH HOH . J 5 HOH B 26 626 235 HOH HOH . J 5 HOH B 27 627 166 HOH HOH . J 5 HOH B 28 628 163 HOH HOH . J 5 HOH B 29 629 20 HOH HOH . J 5 HOH B 30 630 53 HOH HOH . J 5 HOH B 31 631 70 HOH HOH . J 5 HOH B 32 632 138 HOH HOH . J 5 HOH B 33 633 149 HOH HOH . J 5 HOH B 34 634 244 HOH HOH . J 5 HOH B 35 635 5 HOH HOH . J 5 HOH B 36 636 248 HOH HOH . J 5 HOH B 37 637 234 HOH HOH . J 5 HOH B 38 638 159 HOH HOH . J 5 HOH B 39 639 4 HOH HOH . J 5 HOH B 40 640 131 HOH HOH . J 5 HOH B 41 641 120 HOH HOH . J 5 HOH B 42 642 119 HOH HOH . J 5 HOH B 43 643 261 HOH HOH . J 5 HOH B 44 644 157 HOH HOH . J 5 HOH B 45 645 180 HOH HOH . J 5 HOH B 46 646 198 HOH HOH . J 5 HOH B 47 647 7 HOH HOH . J 5 HOH B 48 648 169 HOH HOH . J 5 HOH B 49 649 208 HOH HOH . J 5 HOH B 50 650 259 HOH HOH . J 5 HOH B 51 651 185 HOH HOH . J 5 HOH B 52 652 245 HOH HOH . J 5 HOH B 53 653 127 HOH HOH . J 5 HOH B 54 654 108 HOH HOH . J 5 HOH B 55 655 124 HOH HOH . J 5 HOH B 56 656 3 HOH HOH . J 5 HOH B 57 657 164 HOH HOH . J 5 HOH B 58 658 17 HOH HOH . J 5 HOH B 59 659 239 HOH HOH . J 5 HOH B 60 660 176 HOH HOH . J 5 HOH B 61 661 48 HOH HOH . J 5 HOH B 62 662 142 HOH HOH . J 5 HOH B 63 663 136 HOH HOH . J 5 HOH B 64 664 210 HOH HOH . J 5 HOH B 65 665 278 HOH HOH . J 5 HOH B 66 666 28 HOH HOH . J 5 HOH B 67 667 30 HOH HOH . J 5 HOH B 68 668 184 HOH HOH . J 5 HOH B 69 669 241 HOH HOH . J 5 HOH B 70 670 143 HOH HOH . J 5 HOH B 71 671 229 HOH HOH . J 5 HOH B 72 672 201 HOH HOH . J 5 HOH B 73 673 260 HOH HOH . J 5 HOH B 74 674 40 HOH HOH . J 5 HOH B 75 675 258 HOH HOH . J 5 HOH B 76 676 204 HOH HOH . J 5 HOH B 77 677 99 HOH HOH . J 5 HOH B 78 678 23 HOH HOH . J 5 HOH B 79 679 55 HOH HOH . J 5 HOH B 80 680 71 HOH HOH . J 5 HOH B 81 681 115 HOH HOH . J 5 HOH B 82 682 22 HOH HOH . J 5 HOH B 83 683 125 HOH HOH . J 5 HOH B 84 684 41 HOH HOH . J 5 HOH B 85 685 154 HOH HOH . J 5 HOH B 86 686 116 HOH HOH . J 5 HOH B 87 687 31 HOH HOH . J 5 HOH B 88 688 130 HOH HOH . J 5 HOH B 89 689 51 HOH HOH . J 5 HOH B 90 690 73 HOH HOH . J 5 HOH B 91 691 114 HOH HOH . J 5 HOH B 92 692 104 HOH HOH . J 5 HOH B 93 693 137 HOH HOH . J 5 HOH B 94 694 203 HOH HOH . J 5 HOH B 95 695 190 HOH HOH . J 5 HOH B 96 696 251 HOH HOH . J 5 HOH B 97 697 153 HOH HOH . J 5 HOH B 98 698 156 HOH HOH . J 5 HOH B 99 699 179 HOH HOH . J 5 HOH B 100 700 226 HOH HOH . J 5 HOH B 101 701 64 HOH HOH . J 5 HOH B 102 702 15 HOH HOH . J 5 HOH B 103 703 148 HOH HOH . J 5 HOH B 104 704 87 HOH HOH . J 5 HOH B 105 705 167 HOH HOH . J 5 HOH B 106 706 175 HOH HOH . J 5 HOH B 107 707 91 HOH HOH . J 5 HOH B 108 708 112 HOH HOH . J 5 HOH B 109 709 75 HOH HOH . J 5 HOH B 110 710 62 HOH HOH . J 5 HOH B 111 711 206 HOH HOH . J 5 HOH B 112 712 93 HOH HOH . J 5 HOH B 113 713 171 HOH HOH . J 5 HOH B 114 714 42 HOH HOH . J 5 HOH B 115 715 140 HOH HOH . J 5 HOH B 116 716 155 HOH HOH . J 5 HOH B 117 717 141 HOH HOH . J 5 HOH B 118 718 213 HOH HOH . J 5 HOH B 119 719 77 HOH HOH . J 5 HOH B 120 720 194 HOH HOH . J 5 HOH B 121 721 129 HOH HOH . J 5 HOH B 122 722 21 HOH HOH . J 5 HOH B 123 723 232 HOH HOH . J 5 HOH B 124 724 29 HOH HOH . J 5 HOH B 125 725 177 HOH HOH . J 5 HOH B 126 726 224 HOH HOH . J 5 HOH B 127 727 264 HOH HOH . J 5 HOH B 128 728 219 HOH HOH . J 5 HOH B 129 729 195 HOH HOH . J 5 HOH B 130 730 282 HOH HOH . J 5 HOH B 131 731 237 HOH HOH . J 5 HOH B 132 732 250 HOH HOH . J 5 HOH B 133 733 33 HOH HOH . J 5 HOH B 134 734 216 HOH HOH . J 5 HOH B 135 735 45 HOH HOH . J 5 HOH B 136 736 24 HOH HOH . J 5 HOH B 137 737 281 HOH HOH . J 5 HOH B 138 738 8 HOH HOH . J 5 HOH B 139 739 255 HOH HOH . J 5 HOH B 140 740 266 HOH HOH . J 5 HOH B 141 741 265 HOH HOH . J 5 HOH B 142 742 262 HOH HOH . J 5 HOH B 143 743 263 HOH HOH . J 5 HOH B 144 744 277 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.958 _atom_site.Cartn_y 13.754 _atom_site.Cartn_z -16.658 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.33 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #