data_5U3C
#
_model_server_result.job_id            '_dX98w6n4zU784I5l9r2dA' 
_model_server_result.datetime_utc      '2024-11-15 05:32:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u3c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":601}' 
#
_entry.id    5U3C 
#
_exptl.entry_id    5U3C 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              483.156 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "CYTIDINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? 28-meric 28 'representative helical assembly' 1 
? tetrameric 4 'helical asymmetric unit' 2 
? tetrameric 4 'helical asymmetric unit, std helical frame' 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 (1-7) 
A,B,C,D,E,F,G,H,I,J,K,L 2 4 
A,B,C,D,E,F,G,H,I,J,K,L 3 H 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
H 'transform to helical frame' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 
1 'helical symmetry operation' ? ? -0.82599 0.563685 0 -0.563685 -0.82599 0 0 0 1 0 0 -244.773 
2 'helical symmetry operation' ? ? -0.124052 0.992276 0 -0.992276 -0.124052 0 0 0 1 0 0 -163.182 
3 'helical symmetry operation' ? ? 0.661796 0.749684 0 -0.749684 0.661796 0 0 0 1 0 0 -81.591 
4 'helical symmetry operation' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 
5 'helical symmetry operation' ? ? 0.661796 -0.749684 0 0.749684 0.661796 0 0 0 1 0 0 81.591 
6 'helical symmetry operation' ? ? -0.124052 -0.992276 0 0.992276 -0.124052 0 0 0 1 0 0 163.182 
7 'helical symmetry operation' ? ? -0.82599 -0.563685 0 0.563685 -0.82599 0 0 0 1 0 0 244.773 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 261 A CYS 261 1_555 A SG CYS 268 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf2 B SG CYS 261 B CYS 261 1_555 B SG CYS 268 B CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf3 C SG CYS 261 C CYS 261 1_555 C SG CYS 268 C CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf4 D SG CYS 261 D CYS 261 1_555 D SG CYS 268 D CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C9 H16 N3 O14 P3' 
_chem_comp.formula_weight    483.156 
_chem_comp.id                CTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "CYTIDINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5U3C 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CTP A 1 601 602 CTP CTP . 
F 3 ADP A 1 602 601 ADP ADP . 
G 2 CTP B 1 601 602 CTP CTP . 
H 3 ADP B 1 602 601 ADP ADP . 
I 2 CTP C 1 601 602 CTP CTP . 
J 3 ADP C 1 602 601 ADP ADP . 
K 2 CTP D 1 601 602 CTP CTP . 
L 3 ADP D 1 602 601 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 CTP . . . G 2 -0.426 -13.431 -11.247 1 38.6 ? N1 CTP 601 B 1 
HETATM 2 C C2 CTP . . . G 2 0.162 -13.315 -9.947 1 41.36 ? C2 CTP 601 B 1 
HETATM 3 N N3 CTP . . . G 2 -0.292 -12.332 -9.118 1 40.2 ? N3 CTP 601 B 1 
HETATM 4 C C4 CTP . . . G 2 -1.514 -11.73 -9.405 1 38.26 ? C4 CTP 601 B 1 
HETATM 5 C C5 CTP . . . G 2 -2.232 -12.106 -10.55 1 35.37 ? C5 CTP 601 B 1 
HETATM 6 C C6 CTP . . . G 2 -1.656 -12.894 -11.518 1 36.32 ? C6 CTP 601 B 1 
HETATM 7 O O2 CTP . . . G 2 1.221 -13.871 -9.693 1 42.93 ? O2 CTP 601 B 1 
HETATM 8 N N4 CTP . . . G 2 -1.847 -10.611 -8.759 1 43.37 ? N4 CTP 601 B 1 
HETATM 9 C C1' CTP . . . G 2 0.361 -14.019 -12.335 1 38.7 ? C1' CTP 601 B 1 
HETATM 10 C C2' CTP . . . G 2 0.179 -15.472 -12.586 1 41.49 ? C2' CTP 601 B 1 
HETATM 11 O O2' CTP . . . G 2 1.236 -16.202 -11.956 1 42.81 ? O2' CTP 601 B 1 
HETATM 12 C C3' CTP . . . G 2 0.308 -15.586 -14.114 1 43.09 ? C3' CTP 601 B 1 
HETATM 13 C C4' CTP . . . G 2 0.292 -14.151 -14.614 1 36.38 ? C4' CTP 601 B 1 
HETATM 14 O O4' CTP . . . G 2 -0.246 -13.416 -13.511 1 38.44 ? O4' CTP 601 B 1 
HETATM 15 O O3' CTP . . . G 2 1.555 -16.183 -14.441 1 48.47 ? O3' CTP 601 B 1 
HETATM 16 C C5' CTP . . . G 2 -0.612 -14.019 -15.856 1 42.49 ? C5' CTP 601 B 1 
HETATM 17 O O5' CTP . . . G 2 -0.187 -12.923 -16.617 1 43.36 ? O5' CTP 601 B 1 
HETATM 18 P PA CTP . . . G 2 0.909 -13.095 -17.773 1 40.11 ? PA CTP 601 B 1 
HETATM 19 O O1A CTP . . . G 2 1.302 -11.766 -18.283 1 41.92 ? O1A CTP 601 B 1 
HETATM 20 O O2A CTP . . . G 2 1.983 -14.049 -17.396 1 29.56 ? O2A CTP 601 B 1 
HETATM 21 O O3A CTP . . . G 2 0.067 -13.903 -18.887 1 44.15 ? O3A CTP 601 B 1 
HETATM 22 P PB CTP . . . G 2 -1.551 -14.249 -18.874 1 37.55 ? PB CTP 601 B 1 
HETATM 23 O O1B CTP . . . G 2 -1.982 -14.873 -20.135 1 38.41 ? O1B CTP 601 B 1 
HETATM 24 O O2B CTP . . . G 2 -1.977 -14.907 -17.615 1 44.65 ? O2B CTP 601 B 1 
HETATM 25 O O3B CTP . . . G 2 -2.147 -12.75 -18.802 1 39.65 ? O3B CTP 601 B 1 
HETATM 26 P PG CTP . . . G 2 -1.277 -11.367 -19.128 1 43.25 ? PG CTP 601 B 1 
HETATM 27 O O1G CTP . . . G 2 -0.223 -11.52 -20.156 1 52.65 ? O1G CTP 601 B 1 
HETATM 28 O O2G CTP . . . G 2 -0.724 -10.861 -17.707 1 42.39 ? O2G CTP 601 B 1 
HETATM 29 O O3G CTP . . . G 2 -2.381 -10.287 -19.575 1 48.69 ? O3G CTP 601 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    48 
_model_server_stats.query_time_ms           458 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           29 
#