data_5U3C # _model_server_result.job_id T8YDH5SISXcGsUC8AXuJEw _model_server_result.datetime_utc '2024-11-15 05:23:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 5U3C # _exptl.entry_id 5U3C _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 483.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 28-meric 28 'representative helical assembly' 1 ? tetrameric 4 'helical asymmetric unit' 2 ? tetrameric 4 'helical asymmetric unit, std helical frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 (1-7) A,B,C,D,E,F,G,H,I,J,K,L 2 4 A,B,C,D,E,F,G,H,I,J,K,L 3 H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] H 'transform to helical frame' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 1 'helical symmetry operation' ? ? -0.82599 0.563685 0 -0.563685 -0.82599 0 0 0 1 0 0 -244.773 2 'helical symmetry operation' ? ? -0.124052 0.992276 0 -0.992276 -0.124052 0 0 0 1 0 0 -163.182 3 'helical symmetry operation' ? ? 0.661796 0.749684 0 -0.749684 0.661796 0 0 0 1 0 0 -81.591 4 'helical symmetry operation' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 5 'helical symmetry operation' ? ? 0.661796 -0.749684 0 0.749684 0.661796 0 0 0 1 0 0 81.591 6 'helical symmetry operation' ? ? -0.124052 -0.992276 0 0.992276 -0.124052 0 0 0 1 0 0 163.182 7 'helical symmetry operation' ? ? -0.82599 -0.563685 0 0.563685 -0.82599 0 0 0 1 0 0 244.773 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 261 A CYS 261 1_555 A SG CYS 268 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf2 B SG CYS 261 B CYS 261 1_555 B SG CYS 268 B CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 C SG CYS 261 C CYS 261 1_555 C SG CYS 268 C CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 D SG CYS 261 D CYS 261 1_555 D SG CYS 268 D CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5U3C _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CTP A 1 601 602 CTP CTP . F 3 ADP A 1 602 601 ADP ADP . G 2 CTP B 1 601 602 CTP CTP . H 3 ADP B 1 602 601 ADP ADP . I 2 CTP C 1 601 602 CTP CTP . J 3 ADP C 1 602 601 ADP ADP . K 2 CTP D 1 601 602 CTP CTP . L 3 ADP D 1 602 601 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . . . I 2 -7.008 11.535 6.44 1 38.6 ? N1 CTP 601 C 1 HETATM 2 C C2 CTP . . . I 2 -6.431 11.737 5.145 1 41.36 ? C2 CTP 601 C 1 HETATM 3 N N3 CTP . . . I 2 -6.31 10.66 4.316 1 40.2 ? N3 CTP 601 C 1 HETATM 4 C C4 CTP . . . I 2 -7.028 9.505 4.607 1 38.26 ? C4 CTP 601 C 1 HETATM 5 C C5 CTP . . . I 2 -7.839 9.451 5.75 1 35.37 ? C5 CTP 601 C 1 HETATM 6 C C6 CTP . . . I 2 -7.775 10.433 6.709 1 36.32 ? C6 CTP 601 C 1 HETATM 7 O O2 CTP . . . I 2 -5.786 12.748 4.904 1 42.93 ? O2 CTP 601 C 1 HETATM 8 N N4 CTP . . . I 2 -6.728 8.379 3.957 1 43.37 ? N4 CTP 601 C 1 HETATM 9 C C1' CTP . . . I 2 -6.588 12.401 7.547 1 38.7 ? C1' CTP 601 C 1 HETATM 10 C C2' CTP . . . I 2 -7.432 13.59 7.832 1 41.49 ? C2' CTP 601 C 1 HETATM 11 O O2' CTP . . . I 2 -6.862 14.743 7.207 1 42.81 ? O2' CTP 601 C 1 HETATM 12 C C3' CTP . . . I 2 -7.341 13.725 9.362 1 43.09 ? C3' CTP 601 C 1 HETATM 13 C C4' CTP . . . I 2 -6.702 12.428 9.828 1 36.38 ? C4' CTP 601 C 1 HETATM 14 O O4' CTP . . . I 2 -6.84 11.556 8.703 1 38.44 ? O4' CTP 601 C 1 HETATM 15 O O3' CTP . . . I 2 -6.488 14.812 9.695 1 48.47 ? O3' CTP 601 C 1 HETATM 16 C C5' CTP . . . I 2 -7.447 11.865 11.054 1 42.49 ? C5' CTP 601 C 1 HETATM 17 O O5' CTP . . . I 2 -6.544 11.134 11.836 1 43.36 ? O5' CTP 601 C 1 HETATM 18 P PA CTP . . . I 2 -5.681 11.846 12.982 1 40.11 ? PA CTP 601 C 1 HETATM 19 O O1A CTP . . . I 2 -5.212 13.198 12.582 1 29.56 ? O1A CTP 601 C 1 HETATM 20 O O2A CTP . . . I 2 -4.691 10.891 13.518 1 41.92 ? O2A CTP 601 C 1 HETATM 21 O O3A CTP . . . I 2 -6.822 12.157 14.079 1 44.15 ? O3A CTP 601 C 1 HETATM 22 P PB CTP . . . I 2 -8.403 11.671 14.046 1 37.55 ? PB CTP 601 C 1 HETATM 23 O O1B CTP . . . I 2 -9.085 12.062 12.788 1 44.65 ? O1B CTP 601 C 1 HETATM 24 O O2B CTP . . . I 2 -9.093 11.983 15.307 1 38.41 ? O2B CTP 601 C 1 HETATM 25 O O3B CTP . . . I 2 -8.193 10.072 13.947 1 39.65 ? O3B CTP 601 C 1 HETATM 26 P PG CTP . . . I 2 -6.773 9.276 14.308 1 43.25 ? PG CTP 601 C 1 HETATM 27 O O1G CTP . . . I 2 -6.029 9.06 12.901 1 42.39 ? O1G CTP 601 C 1 HETATM 28 O O2G CTP . . . I 2 -5.934 9.937 15.332 1 52.65 ? O2G CTP 601 C 1 HETATM 29 O O3G CTP . . . I 2 -7.233 7.812 14.785 1 48.69 ? O3G CTP 601 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 419 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #